MELO3C018213 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C018213
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrotransposon protein, putative, Ty3-gypsy subclass
Location	chr4 : 8281970 .. 8282287 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCCAAGTTCCTGTATTGGCTTTACCAAATTTCAAGAAGCCCTTTGTGGTCGAGACAGATGCCTCCGAAGTCGGGATGGGGGCTATCATGGAGAATAAACGGCCACTTGAGTTTTTCAGCCAAGCATTAGCACCTCCCCACAAGTTCAAGGCAGTGTACGAGCATGAACTGACGGCTATTGTGTTTGCTATTCGAAAATGGCGACCATATTTATTGGGTAGGAGGTTTATTGTTGGCACCGATCAGAAAAGTTTGAAGTTTTTGCTCAAACAACGGGTAATAGCAAGGGAACAGCAGCGCTGGATCACCAAGTAG

mRNA sequence

ATGATCCAAGTTCCTGTATTGGCTTTACCAAATTTCAAGAAGCCCTTTGTGGTCGAGACAGATGCCTCCGAAGTCGGGATGGGGGCTATCATGGAGAATAAACGGCCACTTGAGTTTTTCAGCCAAGCATTAGCACCTCCCCACAAGTTCAAGGCAGTGTACGAGCATGAACTGACGGCTATTGTGTTTGCTATTCGAAAATGGCGACCATATTTATTGGGTAGGAGGTTTATTGTTGGCACCGATCAGAAAAGTTTGAAGTTTTTGCTCAAACAACGGGTAATAGCAAGGGAACAGCAGCGCTGGATCACCAAGTAG

Coding sequence (CDS)

ATGATCCAAGTTCCTGTATTGGCTTTACCAAATTTCAAGAAGCCCTTTGTGGTCGAGACAGATGCCTCCGAAGTCGGGATGGGGGCTATCATGGAGAATAAACGGCCACTTGAGTTTTTCAGCCAAGCATTAGCACCTCCCCACAAGTTCAAGGCAGTGTACGAGCATGAACTGACGGCTATTGTGTTTGCTATTCGAAAATGGCGACCATATTTATTGGGTAGGAGGTTTATTGTTGGCACCGATCAGAAAAGTTTGAAGTTTTTGCTCAAACAACGGGTAATAGCAAGGGAACAGCAGCGCTGGATCACCAAGTAG

Protein sequence

MIQVPVLALPNFKKPFVVETDASEVGMGAIMENKRPLEFFSQALAPPHKFKAVYEHELTAIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQRWITK*

Homology

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BLAST of MELO3C018213 vs. Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.0e-13
Identity = 39/103 (37.86%), Postives = 64/103 (62.14%), Query Frame = 1


Query: 1   MIQVPVLALPNFKKPFVVETDASEVGMGAIM-ENKRPLEFFSQALAPPHKFKAVYEHELT 60
           +I+ P+L LP+F+K FV+ TDAS + +GA++ +N  P+ F S+ L       +  E EL 
Sbjct: 493 IIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELL 552

Query: 61  AIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQRW 103
           AIV+A + +R YLLGR+F++ +D + L++L   +    + +RW
Sbjct: 553 AIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERW 595

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BLAST of MELO3C018213 vs. Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.2e-11
Identity = 37/102 (36.27%), Postives = 58/102 (56.86%), Query Frame = 1


Query: 5   PVLALPNFKKPFVVETDASEVGMGAIM-ENKRPLEFFSQALAPPHKFKAVYEHELTAIVF 64
           P+L +P+F K F + TDAS+V +GA++ ++  PL + S+ L       +  E EL AIV+
Sbjct: 498 PILKVPDFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVW 557

Query: 65  AIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQRWITK 106
           A + +R YLLGR F + +D + L +L + +    +  RW  K
Sbjct: 558 ATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVK 599

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BLAST of MELO3C018213 vs. Swiss-Prot
Match: POLY_DROME (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.4e-10
Identity = 39/99 (39.39%), Postives = 56/99 (56.57%), Query Frame = 1


Query: 6   VLALPNFKKPFVVETDASEVGMGAIMENK-RPLEFFSQALAPPHKFKAVYEHELTAIVFA 65
           +L  P+FKKPF + TDAS  G+GA++  + RP+   S+ L  P +  A  E EL AIV+A
Sbjct: 485 ILKYPDFKKPFDLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWA 544

Query: 66  IRKWRPYLLGRRFI-VGTDQKSLKFLLKQRVIAREQQRW 103
           + K + +L G R I + TD + L F +  R    + +RW
Sbjct: 545 LGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRW 583

[Close]

BLAST of MELO3C018213 vs. Swiss-Prot
Match: POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-07
Identity = 36/103 (34.95%), Postives = 52/103 (50.49%), Query Frame = 1


Query: 6   VLALPNFKKPFVVETDASEVGMGAIME-----NKRPLEFFSQALAPPHKFKAVYEHELTA 65
           +LA P F KPF + TDAS   +GA++        RP+ + S++L    +  A  E E+ A
Sbjct: 425 ILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLA 484

Query: 66  IVFAIRKWRPYLLGRRFI-VGTDQKSLKFLLKQRVIAREQQRW 103
           I++++   R YL G   I V TD + L F L  R    + +RW
Sbjct: 485 IIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRW 527

[Close]

BLAST of MELO3C018213 vs. TrEMBL
Match: A0A078J741_BRANA (BnaC08g13650D protein (Fragment) OS=Brassica napus GN=BnaC08g13650D PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.4e-28
Identity = 67/106 (63.21%), Postives = 82/106 (77.36%), Query Frame = 1


Query: 1   MIQVPVLALPNFKKPFVVETDASEVGMGAI-MENKRPLEFFSQALAPPHKFKAVYEHELT 60
           M  VPVLA+P+F+  F VE+DAS +G+GA+ M+  RPL FFSQAL    K K+VYE EL 
Sbjct: 50  MTTVPVLAMPDFEALFEVESDASSIGLGAVLMQRGRPLAFFSQALTERQKLKSVYERELM 109

Query: 61  AIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQRWITK 106
           AIVFA++KWR YL GRRF+V +DQKSLKFLL+QR I  E QRW+TK
Sbjct: 110 AIVFAVQKWRHYLTGRRFVVSSDQKSLKFLLEQREINMEYQRWLTK 155

[Close]

BLAST of MELO3C018213 vs. TrEMBL
Match: A0A087FY99_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AAs54367U000800 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.0e-28
Identity = 65/106 (61.32%), Postives = 83/106 (78.30%), Query Frame = 1


Query: 1   MIQVPVLALPNFKKPFVVETDASEVGMGAI-MENKRPLEFFSQALAPPHKFKAVYEHELT 60
           M  VPVLAL +F K FVVE+DAS +G+G + M+ ++P+ +FSQAL   HK K+VYE EL 
Sbjct: 675 MSTVPVLALVDFSKQFVVESDASGIGLGVVLMQQQQPIAYFSQALTDKHKLKSVYERELM 734

Query: 61  AIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQRWITK 106
            +VFAI+KWR YLLGRRF+V TDQ+SLKFLL+QR I  E QRW++K
Sbjct: 735 VVVFAIQKWRHYLLGRRFVVKTDQRSLKFLLEQREINLEYQRWLSK 780

[Close]

BLAST of MELO3C018213 vs. TrEMBL
Match: A0A087G3S6_ARAAL (Uncharacterized protein (Fragment) OS=Arabis alpina GN=AALP_AAs46225U000100 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 5.2e-28
Identity = 67/106 (63.21%), Postives = 84/106 (79.25%), Query Frame = 1


Query: 1    MIQVPVLALPNFKKPFVVETDASEVGMGAI-MENKRPLEFFSQALAPPHKFKAVYEHELT 60
            M  VPVLAL +F + FVVE+DAS  G+GA+ M+++RPL +FSQAL    + K+VYE EL 
Sbjct: 922  MSTVPVLALVDFTEQFVVESDASGTGLGAVLMQSQRPLAYFSQALTERQRLKSVYERELM 981

Query: 61   AIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQRWITK 106
            AIVFAI+KWR YLLGR+F+V TDQKSLKFLL+QR I  E Q+W+TK
Sbjct: 982  AIVFAIQKWRHYLLGRKFVVRTDQKSLKFLLEQREINMEYQKWLTK 1027

[Close]

BLAST of MELO3C018213 vs. TrEMBL
Match: A0A087HNU2_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G173500 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 8.8e-28
Identity = 68/106 (64.15%), Postives = 83/106 (78.30%), Query Frame = 1


Query: 1   MIQVPVLALPNFKKPFVVETDASEVGMGAI-MENKRPLEFFSQALAPPHKFKAVYEHELT 60
           M  VPVLAL NF   FVVE+DAS VG+GA+ M+ ++P+ +FSQAL    + K+VYE EL 
Sbjct: 1   MSTVPVLALVNFSLLFVVESDASGVGLGAVLMQQQQPIAYFSQALTERQRLKSVYERELM 60

Query: 61  AIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQRWITK 106
           AIVFAI+KW+ YLLGR+FIV TDQKSLKFLL+QR I  E QRW+TK
Sbjct: 61  AIVFAIQKWKHYLLGRKFIVKTDQKSLKFLLEQREINLEYQRWLTK 106

[Close]

BLAST of MELO3C018213 vs. TrEMBL
Match: A0A087H8D5_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G106900 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 8.8e-28
Identity = 65/106 (61.32%), Postives = 83/106 (78.30%), Query Frame = 1


Query: 1   MIQVPVLALPNFKKPFVVETDASEVGMGAI-MENKRPLEFFSQALAPPHKFKAVYEHELT 60
           M+ VPVL + +F   FVVE+DAS  G+GA+ M++++PL +FSQAL    K K+VYE EL 
Sbjct: 847 MVTVPVLTMADFDAQFVVESDASGTGLGAVLMQHQKPLAYFSQALTDRQKLKSVYERELM 906

Query: 61  AIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQRWITK 106
           AIVFAI+KWR YLLGR+F+V TDQKSLKFLL+QR I  E Q+W+TK
Sbjct: 907 AIVFAIQKWRHYLLGRKFVVRTDQKSLKFLLEQRQINMEYQKWLTK 952

[Close]

BLAST of MELO3C018213 vs. NCBI nr
Match: gi|923614274|ref|XP_013745228.1| (PREDICTED: uncharacterized protein LOC106447810 [Brassica napus])

HSP 1 Score: 136.7 bits (343), Expect = 2.3e-29
Identity = 68/106 (64.15%), Postives = 85/106 (80.19%), Query Frame = 1


Query: 1    MIQVPVLALPNFKKPFVVETDASEVGMGAI-MENKRPLEFFSQALAPPHKFKAVYEHELT 60
            M  VPVLALP+F + FV+E+DAS VG+GA+ M+ +RP+ +FSQAL    + K+VYE EL 
Sbjct: 924  MATVPVLALPDFNEQFVIESDASGVGLGAVLMQRQRPIAYFSQALTERQQMKSVYERELM 983

Query: 61   AIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQRWITK 106
            AIVFAI+KWR YLLGR+F+V TDQKSLKFLL+QR I  E QRW+TK
Sbjct: 984  AIVFAIQKWRHYLLGRKFVVRTDQKSLKFLLEQREINMEYQRWLTK 1029

[Close]

BLAST of MELO3C018213 vs. NCBI nr
Match: gi|674874253|emb|CDY59150.1| (BnaC08g13650D, partial [Brassica napus])

HSP 1 Score: 133.7 bits (335), Expect = 2.0e-28
Identity = 67/106 (63.21%), Postives = 82/106 (77.36%), Query Frame = 1


Query: 1   MIQVPVLALPNFKKPFVVETDASEVGMGAI-MENKRPLEFFSQALAPPHKFKAVYEHELT 60
           M  VPVLA+P+F+  F VE+DAS +G+GA+ M+  RPL FFSQAL    K K+VYE EL 
Sbjct: 50  MTTVPVLAMPDFEALFEVESDASSIGLGAVLMQRGRPLAFFSQALTERQKLKSVYERELM 109

Query: 61  AIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQRWITK 106
           AIVFA++KWR YL GRRF+V +DQKSLKFLL+QR I  E QRW+TK
Sbjct: 110 AIVFAVQKWRHYLTGRRFVVSSDQKSLKFLLEQREINMEYQRWLTK 155

[Close]

BLAST of MELO3C018213 vs. NCBI nr
Match: gi|922559973|ref|XP_013608212.1| (PREDICTED: uncharacterized protein LOC106314967 [Brassica oleracea var. oleracea])

HSP 1 Score: 132.5 bits (332), Expect = 4.4e-28
Identity = 65/106 (61.32%), Postives = 87/106 (82.08%), Query Frame = 1


Query: 1    MIQVPVLALPNFKKPFVVETDASEVGMGAIM-ENKRPLEFFSQALAPPHKFKAVYEHELT 60
            M  +PVLALP+F++ FVVE+DAS  G+GA++ +N+RP+ ++SQAL+   + K+VYE EL 
Sbjct: 996  MSTIPVLALPDFQEQFVVESDASGKGLGAVLIQNQRPIAYYSQALSERQQLKSVYERELM 1055

Query: 61   AIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQRWITK 106
            AIVFAI+KWR YLLGR+F+V TDQKSLKFLL+QR I  E Q+W+TK
Sbjct: 1056 AIVFAIQKWRHYLLGRKFLVRTDQKSLKFLLEQRKINVEYQKWLTK 1101

[Close]

BLAST of MELO3C018213 vs. NCBI nr
Match: gi|674228816|gb|KFK22601.1| (hypothetical protein AALP_AAs54367U000800 [Arabis alpina])

HSP 1 Score: 132.5 bits (332), Expect = 4.4e-28
Identity = 65/106 (61.32%), Postives = 83/106 (78.30%), Query Frame = 1


Query: 1   MIQVPVLALPNFKKPFVVETDASEVGMGAI-MENKRPLEFFSQALAPPHKFKAVYEHELT 60
           M  VPVLAL +F K FVVE+DAS +G+G + M+ ++P+ +FSQAL   HK K+VYE EL 
Sbjct: 675 MSTVPVLALVDFSKQFVVESDASGIGLGVVLMQQQQPIAYFSQALTDKHKLKSVYERELM 734

Query: 61  AIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQRWITK 106
            +VFAI+KWR YLLGRRF+V TDQ+SLKFLL+QR I  E QRW++K
Sbjct: 735 VVVFAIQKWRHYLLGRRFVVKTDQRSLKFLLEQREINLEYQRWLSK 780

[Close]

BLAST of MELO3C018213 vs. NCBI nr
Match: gi|922423376|ref|XP_013617706.1| (PREDICTED: uncharacterized protein LOC106324252 [Brassica oleracea var. oleracea])

HSP 1 Score: 131.7 bits (330), Expect = 7.4e-28
Identity = 67/106 (63.21%), Postives = 83/106 (78.30%), Query Frame = 1


Query: 1    MIQVPVLALPNFKKPFVVETDASEVGMGAI-MENKRPLEFFSQALAPPHKFKAVYEHELT 60
            M  VPVLALP+F + FVVE++AS VG+GA+ M+ +RP+ +FSQAL    K K+VYE EL 
Sbjct: 939  MSTVPVLALPDFNEVFVVESEASGVGLGAVLMQGQRPIAYFSQALTERQKLKSVYERELM 998

Query: 61   AIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQRWITK 106
            AIVFA+ KWR YLLGR FIV TDQKSLKFLL+QR I  + QRW++K
Sbjct: 999  AIVFALMKWRHYLLGRHFIVRTDQKSLKFLLEQREINMDYQRWLSK 1044

The following BLAST results are available for this feature:

BLAST of MELO3C018213 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POL2_DROME	1.0e-13	37.86	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
POL3_DROME	2.2e-11	36.27	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
POLY_DROME	2.4e-10	39.39	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
POL5_DROME	1.5e-07	34.95	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]

BLAST of MELO3C018213 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A078J741_BRANA	1.4e-28	63.21	BnaC08g13650D protein (Fragment) OS=Brassica napus GN=BnaC08g13650D PE=4 SV=1	[more]
A0A087FY99_ARAAL	3.0e-28	61.32	Uncharacterized protein OS=Arabis alpina GN=AALP_AAs54367U000800 PE=4 SV=1	[more]
A0A087G3S6_ARAAL	5.2e-28	63.21	Uncharacterized protein (Fragment) OS=Arabis alpina GN=AALP_AAs46225U000100 PE=4...	[more]
A0A087HNU2_ARAAL	8.8e-28	64.15	Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G173500 PE=4 SV=1	[more]
A0A087H8D5_ARAAL	8.8e-28	61.32	Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G106900 PE=4 SV=1	[more]

BLAST of MELO3C018213 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|923614274\|ref\|XP_013745228.1\|	2.3e-29	64.15	PREDICTED: uncharacterized protein LOC106447810 [Brassica napus]	[more]
gi\|674874253\|emb\|CDY59150.1\|	2.0e-28	63.21	BnaC08g13650D, partial [Brassica napus]	[more]
gi\|922559973\|ref\|XP_013608212.1\|	4.4e-28	61.32	PREDICTED: uncharacterized protein LOC106314967 [Brassica oleracea var. oleracea...	[more]
gi\|674228816\|gb\|KFK22601.1\|	4.4e-28	61.32	hypothetical protein AALP_AAs54367U000800 [Arabis alpina]	[more]
gi\|922423376\|ref\|XP_013617706.1\|	7.4e-28	63.21	PREDICTED: uncharacterized protein LOC106324252 [Brassica oleracea var. oleracea...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018213T1	MELO3C018213T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24559	FAMILY NOT NAMED	coord: 1..105 score: 2.6
None	No IPR available	PANTHER	PTHR24559:SF201	SUBFAMILY NOT NAMED	coord: 1..105 score: 2.6
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 2..104 score: 8.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C018213	Cucurbita maxima (Rimu)	cmameB033
MELO3C018213	Cucurbita maxima (Rimu)	cmameB428
MELO3C018213	Cucurbita moschata (Rifu)	cmomeB022
MELO3C018213	Cucurbita moschata (Rifu)	cmomeB418
MELO3C018213	Wild cucumber (PI 183967)	cpimeB215
MELO3C018213	Cucumber (Chinese Long) v2	cumeB222
MELO3C018213	Watermelon (Charleston Gray)	mewcgB320
MELO3C018213	Watermelon (97103) v1	mewmB384
MELO3C018213	Cucurbita pepo (Zucchini)	cpemeB519
MELO3C018213	Cucurbita pepo (Zucchini)	cpemeB727
MELO3C018213	Bottle gourd (USVL1VR-Ls)	lsimeB312
MELO3C018213	Cucumber (Gy14) v2	cgybmeB185
MELO3C018213	Silver-seed gourd	carmeB0312
MELO3C018213	Silver-seed gourd	carmeB0891
MELO3C018213	Cucumber (Chinese Long) v3	cucmeB219
MELO3C018213	Watermelon (97103) v2	mewmbB321
MELO3C018213	Wax gourd	mewgoB436
MELO3C018213	Cucumber (Gy14) v1	cgymeB559