MELO3C018204.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C018204.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	subtilisin-like protease SBT3.17 isoform X1
Location	chr04 : 8471081 .. 8471302 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTACACAGCCTGGTTGCTCAAGTGAGGGTAAGACTAGTTCAAATGGGTTGAAGAGGAAGCGGGGAGGCCAGGCAATAGAAATGGCAGAAATCATTCGAAATGCAAGGGAATATGCGAATGACCAGCTAAAGACCATTGCAGAATGGCCAAATGTACGCCACCAAGAAGCAAGCGCAACACATGTGAAGGACGTTAGACAATTGCAGGAAATCCCTTAA

mRNA sequence

ATGGGTACACAGCCTGGTTGCTCAAGTGAGGGTAAGACTAGTTCAAATGGGTTGAAGAGGAAGCGGGGAGGCCAGGCAATAGAAATGGCAGAAATCATTCGAAATGCAAGGGAATATGCGAATGACCAGCTAAAGACCATTGCAGAATGGCCAAATGTACGCCACCAAGAAGCAAGCGCAACACATGTGAAGGACGTTAGACAATTGCAGGAAATCCCTTAA

Coding sequence (CDS)

ATGGGTACACAGCCTGGTTGCTCAAGTGAGGGTAAGACTAGTTCAAATGGGTTGAAGAGGAAGCGGGGAGGCCAGGCAATAGAAATGGCAGAAATCATTCGAAATGCAAGGGAATATGCGAATGACCAGCTAAAGACCATTGCAGAATGGCCAAATGTACGCCACCAAGAAGCAAGCGCAACACATGTGAAGGACGTTAGACAATTGCAGGAAATCCCTTAA

Protein sequence

MGTQPGCSSEGKTSSNGLKRKRGGQAIEMAEIIRNAREYANDQLKTIAEWPNVRHQEASATHVKDVRQLQEIP

Homology

[Close]

BLAST of MELO3C018204.2 vs. NCBI nr
Match: ADN33917.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-09
Identity = 38/72 (52.78%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 1   MGTQPGCSSEGKTSSNGLKRKRGGQAIEMAEIIRNAREYANDQLKTIAEWPNVRHQEASA 60
           M ++ G S +G+ +S+  KRKR G+ IE+A II+NA EYANDQL  I +WP +R+Q+AS 
Sbjct: 122 MDSRLGRSGDGRNASSRSKRKRCGRLIEIANIIQNAMEYANDQLNRIVDWPILRNQDASV 181

Query: 61  THVKDVRQLQEI 73
           T  + VRQLQ I
Sbjct: 182 TQQEVVRQLQAI 193

[Close]

BLAST of MELO3C018204.2 vs. NCBI nr
Match: KGN58436.1 (hypothetical protein Csa_3G643760 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 4.3e-07
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 14 SSNGLKRKRGGQAIEMAEIIRNAREYANDQLKTIAEWPNVRHQEASATHVKDVRQLQEIP 73
          +S+  KRKRGGQ  E  +IIRN  +Y NDQ + I EWP+V+HQ   A + + ++QLQ IP
Sbjct: 3  ASSRSKRKRGGQTAETMKIIRNTMKYVNDQSEAIVEWPSVQHQSKDAFYAEVMKQLQAIP 62

[Close]

BLAST of MELO3C018204.2 vs. NCBI nr
Match: XP_004148199.2 (PREDICTED: RING-H2 finger protein ATL66 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 7.4e-07
Identity = 36/67 (53.73%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 1   MGTQPGCSSEGKTSSNGLKRKRGGQAIEMAEIIRNAREYANDQLKTIAEWPNVRHQEASA 60
           M T+P  SSE +T S+  KRKR GQ +E  E+  +A EYANDQLK IAE  N+  Q+ SA
Sbjct: 219 MDTRPSRSSECRTGSSRSKRKRRGQDVETMEVTCSAMEYANDQLKAIAECQNLARQDESA 278

Query: 61  THVKDVR 68
           T  K VR
Sbjct: 279 TRSKVVR 285

[Close]

BLAST of MELO3C018204.2 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-06
Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 1   MGTQPGCSSEGKTSSNGLKRKRGGQAIEMAEIIRNAREYANDQLKTIAEWPNVRHQEASA 60
           M T+    SE +  S+G KRKR G A +  +I+R A EY N+QL  IAEWP ++ Q+A+ 
Sbjct: 541 METRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQ 600

Query: 61  THVKDVRQLQEIP 74
           T  + VR L+ IP
Sbjct: 601 TRQEIVRHLEAIP 613

[Close]

BLAST of MELO3C018204.2 vs. NCBI nr
Match: ADN33753.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 59.7 bits (143), Expect = 4.8e-06
Identity = 29/72 (40.28%), Postives = 44/72 (61.11%), Query Frame = 0


Query: 2   GTQPGCSSEGKTSSNGLKRKRGGQAIEMAEIIRNAREYANDQLKTIAEWPNVRHQEASAT 61
           G +   +SE +  S+G KRK+G +  EM E+I++A E+ NDQLK   +W   +H      
Sbjct: 33  GIRADQASERRNCSSGSKRKQGSEHYEMVEVIKSAMEFGNDQLKAFEDWSKDKHSTEVEL 92

Query: 62  HVKDVRQLQEIP 74
           H + V+QLQ+IP
Sbjct: 93  HAEVVKQLQDIP 104

[Close]

BLAST of MELO3C018204.2 vs. TrEMBL
Match: tr|E5GBS5|E5GBS5_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.1e-10
Identity = 38/72 (52.78%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 1   MGTQPGCSSEGKTSSNGLKRKRGGQAIEMAEIIRNAREYANDQLKTIAEWPNVRHQEASA 60
           M ++ G S +G+ +S+  KRKR G+ IE+A II+NA EYANDQL  I +WP +R+Q+AS 
Sbjct: 122 MDSRLGRSGDGRNASSRSKRKRCGRLIEIANIIQNAMEYANDQLNRIVDWPILRNQDASV 181

Query: 61  THVKDVRQLQEI 73
           T  + VRQLQ I
Sbjct: 182 TQQEVVRQLQAI 193

[Close]

BLAST of MELO3C018204.2 vs. TrEMBL
Match: tr|A0A0A0LEB9|A0A0A0LEB9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G643760 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.9e-07
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 14 SSNGLKRKRGGQAIEMAEIIRNAREYANDQLKTIAEWPNVRHQEASATHVKDVRQLQEIP 73
          +S+  KRKRGGQ  E  +IIRN  +Y NDQ + I EWP+V+HQ   A + + ++QLQ IP
Sbjct: 3  ASSRSKRKRGGQTAETMKIIRNTMKYVNDQSEAIVEWPSVQHQSKDAFYAEVMKQLQAIP 62

[Close]

BLAST of MELO3C018204.2 vs. TrEMBL
Match: tr|E5GCB5|E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 1   MGTQPGCSSEGKTSSNGLKRKRGGQAIEMAEIIRNAREYANDQLKTIAEWPNVRHQEASA 60
           M T+    SE +  S+G KRKR G A +  +I+R A EY N+QL  IAEWP ++ Q+A+ 
Sbjct: 541 METRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQ 600

Query: 61  THVKDVRQLQEIP 74
           T  + VR L+ IP
Sbjct: 601 TRQEIVRHLEAIP 613

[Close]

BLAST of MELO3C018204.2 vs. TrEMBL
Match: tr|E5GBB1|E5GBB1_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.2e-06
Identity = 29/72 (40.28%), Postives = 44/72 (61.11%), Query Frame = 0


Query: 2   GTQPGCSSEGKTSSNGLKRKRGGQAIEMAEIIRNAREYANDQLKTIAEWPNVRHQEASAT 61
           G +   +SE +  S+G KRK+G +  EM E+I++A E+ NDQLK   +W   +H      
Sbjct: 33  GIRADQASERRNCSSGSKRKQGSEHYEMVEVIKSAMEFGNDQLKAFEDWSKDKHSTEVEL 92

Query: 62  HVKDVRQLQEIP 74
           H + V+QLQ+IP
Sbjct: 93  HAEVVKQLQDIP 104

[Close]

BLAST of MELO3C018204.2 vs. TrEMBL
Match: tr|A0A0A0KFW0|A0A0A0KFW0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G116150 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.1e-06
Identity = 31/65 (47.69%), Postives = 39/65 (60.00%), Query Frame = 0


Query: 8  SSEGKTSSNGLKRKRGGQAIEMAEIIRNAREYANDQLKTIAEWPNVRHQEASATHVKDVR 67
          SSEG+  S+G KRK GGQ  E  ++I N  E  NDQLK IA W   +       HV+ V+
Sbjct: 19 SSEGRNCSSGSKRKHGGQHYEAVDVISNEMEVRNDQLKAIANWSKEKRATEVELHVEVVK 78

Query: 68 QLQEI 73
          QLQ+I
Sbjct: 79 QLQDI 83

The following BLAST results are available for this feature:

BLAST of MELO3C018204.2 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN33917.1	1.2e-09	52.78	hypothetical protein [Cucumis melo subsp. melo]	[more]
KGN58436.1	4.3e-07	50.00	hypothetical protein Csa_3G643760 [Cucumis sativus]	[more]
XP_004148199.2	7.4e-07	53.73	PREDICTED: RING-H2 finger protein ATL66 [Cucumis sativus]	[more]
ADN34114.1	1.6e-06	45.21	retrotransposon protein [Cucumis melo subsp. melo]	[more]
ADN33753.1	4.8e-06	40.28	hypothetical protein [Cucumis melo subsp. melo]	[more]

BLAST of MELO3C018204.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C018204.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C018204.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|E5GBS5\|E5GBS5_CUCME	8.1e-10	52.78	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A0A0LEB9\|A0A0A0LEB9_CUCSA	2.9e-07	50.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G643760 PE=4 SV=1	[more]
tr\|E5GCB5\|E5GCB5_CUCME	1.1e-06	45.21	Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|E5GBB1\|E5GBB1_CUCME	3.2e-06	40.28	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A0A0KFW0\|A0A0A0KFW0_CUCSA	4.1e-06	47.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G116150 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008233	peptidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018204.2.1	MELO3C018204.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C018204.2	Watermelon (97103) v2	medwmbB310
MELO3C018204.2	Wax gourd	medwgoB438
MELO3C018204.2	Cucumber (Gy14) v2	cgybmedB186
MELO3C018204.2	Cucumber (Gy14) v1	cgymedB560
MELO3C018204.2	Cucurbita maxima (Rimu)	cmamedB032
MELO3C018204.2	Cucurbita maxima (Rimu)	cmamedB491
MELO3C018204.2	Cucurbita moschata (Rifu)	cmomedB021
MELO3C018204.2	Cucurbita moschata (Rifu)	cmomedB478
MELO3C018204.2	Cucurbita pepo (Zucchini)	cpemedB617
MELO3C018204.2	Cucurbita pepo (Zucchini)	cpemedB860
MELO3C018204.2	Wild cucumber (PI 183967)	cpimedB209
MELO3C018204.2	Cucumber (Chinese Long) v2	cumedB208
MELO3C018204.2	Bottle gourd (USVL1VR-Ls)	lsimedB326
MELO3C018204.2	Watermelon (Charleston Gray)	medwcgB314
MELO3C018204.2	Watermelon (97103) v1	medwmB378
MELO3C018204.2	Silver-seed gourd	carmedB0898
MELO3C018204.2	Cucumber (Chinese Long) v3	cucmedB212