MELO3C018191 (gene) Melon (DHL92) v3.5.1

NameMELO3C018191
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDNA damage checkpoint protein LCD1
Locationchr4 : 8699036 .. 8699692 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAATGAAGCTCCAGTATCTCAATCTTAATATGCATGGTGTACAGATGAGGAGTTATCGGTTCAAAAGCACTCCTCCACGGAGACCGTATCGACTTTCATCAGAGAAATCTCAGGTAAATGTCTCTGCAAGTTCCCATTTACCTGTGAATGATGAGGTTATTGTTGAAAGTACTACAAAGGGTGCTGAAACTGCACCAAGTGTCTCTGAGACTCACACTACCGATATGGACAACCGATTTGTCCTGGCTAAATCTGTTAATCCTAATATTTTTATTTATTCTCATGAGAGCTCCTCTTTTGAAGATGTGTTTGCTCCAACACCGGGTCATCCGCCTACGACAAATGTTGAAGCTGGTCCATCACGTCGTTCACCACCGATTCAGTCATCAATTCAAGTTGATGCTTCTGTTACAAATCAGAGTTCAGTGTCTAAACATAATCCTATTGATAAATCTACTGAGAATGTGGGAAGGAATGATGTTCATGTTGTTGAGTCTCCGGCTGCTGCTGAGTCTCCTGCTGCTAATGAACATGTCGACCCGACTGATACTTGTGCAACCAATACTGTTGAACTAGATGTTAATGATGAACTCCAACTAGAGACTCAACAATCACCTGGTGTATCTAGGCCAAAGGGAAAGAAGGTTCAATAA

mRNA sequence

ATGTTAATGAAGCTCCAGTATCTCAATCTTAATATGCATGGTGTACAGATGAGGAGTTATCGGTTCAAAAGCACTCCTCCACGGAGACCGTATCGACTTTCATCAGAGAAATCTCAGGTAAATGTCTCTGCAAGTTCCCATTTACCTGTGAATGATGAGGTTATTGTTGAAAGTACTACAAAGGGTGCTGAAACTGCACCAAGTGTCTCTGAGACTCACACTACCGATATGGACAACCGATTTGTCCTGGCTAAATCTGTTAATCCTAATATTTTTATTTATTCTCATGAGAGCTCCTCTTTTGAAGATGTGTTTGCTCCAACACCGGGTCATCCGCCTACGACAAATGTTGAAGCTGGTCCATCACGTCGTTCACCACCGATTCAGTCATCAATTCAAGTTGATGCTTCTGTTACAAATCAGAGTTCAGTGTCTAAACATAATCCTATTGATAAATCTACTGAGAATGTGGGAAGGAATGATGTTCATGTTGTTGAGTCTCCGGCTGCTGCTGAGTCTCCTGCTGCTAATGAACATGTCGACCCGACTGATACTTGTGCAACCAATACTGTTGAACTAGATGTTAATGATGAACTCCAACTAGAGACTCAACAATCACCTGGTGTATCTAGGCCAAAGGGAAAGAAGGTTCAATAA

Coding sequence (CDS)

ATGTTAATGAAGCTCCAGTATCTCAATCTTAATATGCATGGTGTACAGATGAGGAGTTATCGGTTCAAAAGCACTCCTCCACGGAGACCGTATCGACTTTCATCAGAGAAATCTCAGGTAAATGTCTCTGCAAGTTCCCATTTACCTGTGAATGATGAGGTTATTGTTGAAAGTACTACAAAGGGTGCTGAAACTGCACCAAGTGTCTCTGAGACTCACACTACCGATATGGACAACCGATTTGTCCTGGCTAAATCTGTTAATCCTAATATTTTTATTTATTCTCATGAGAGCTCCTCTTTTGAAGATGTGTTTGCTCCAACACCGGGTCATCCGCCTACGACAAATGTTGAAGCTGGTCCATCACGTCGTTCACCACCGATTCAGTCATCAATTCAAGTTGATGCTTCTGTTACAAATCAGAGTTCAGTGTCTAAACATAATCCTATTGATAAATCTACTGAGAATGTGGGAAGGAATGATGTTCATGTTGTTGAGTCTCCGGCTGCTGCTGAGTCTCCTGCTGCTAATGAACATGTCGACCCGACTGATACTTGTGCAACCAATACTGTTGAACTAGATGTTAATGATGAACTCCAACTAGAGACTCAACAATCACCTGGTGTATCTAGGCCAAAGGGAAAGAAGGTTCAATAA

Protein sequence

MLMKLQYLNLNMHGVQMRSYRFKSTPPRRPYRLSSEKSQVNVSASSHLPVNDEVIVESTTKGAETAPSVSETHTTDMDNRFVLAKSVNPNIFIYSHESSSFEDVFAPTPGHPPTTNVEAGPSRRSPPIQSSIQVDASVTNQSSVSKHNPIDKSTENVGRNDVHVVESPAAAESPAANEHVDPTDTCATNTVELDVNDELQLETQQSPGVSRPKGKKVQ*
BLAST of MELO3C018191 vs. TrEMBL
Match: E5GBC0_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 6.7e-14
Identity = 66/208 (31.73%), Postives = 97/208 (46.63%), Query Frame = 1

Query: 33  LSSEKSQVNVSASSHLPVNDEVIVESTTKGAETAPSVSETHTTDMDNR------------ 92
           L++     NVS   H  V ++V  ++ T  AE  PS  +TH  DMD+             
Sbjct: 23  LTTSMHGANVSTRLHKLVPNDVNSQNPTTNAEHEPSAPKTHMYDMDSNDLDDVRLARLLK 82

Query: 93  ------FVLAKSVNPNIFIYSHESSSFEDVFAPTPGHPPTTNVEAGPSRRSPPIQSSIQV 152
                      S++P++  +S ESSS E VF PTPG   T+N + GPS  S P++SS+  
Sbjct: 83  KTYVPNVAAGNSIDPSVSSHSQESSSTEGVFVPTPGVQHTSNFKLGPSLYSSPVRSSVP- 142

Query: 153 DASVTNQSSVSKHNPIDKSTENVGRNDVHVVESPAAAESPAANEHVDPTDTCATNTVELD 212
           D + +  ++ S   P D+S    GR DVH  E          +E ++P +T   +T E+ 
Sbjct: 143 DTTTSGLNNNSAPAPADESATTEGRTDVHNDE----------DEIIEPANT-GDHTGEIP 202

Query: 213 VNDE----LQLETQQSPGVSRPKGKKVQ 219
           V+D      Q +T   P  SRP  K  Q
Sbjct: 203 VDDNNNPTAQPKTHAFPEESRPAKKSQQ 218

BLAST of MELO3C018191 vs. NCBI nr
Match: gi|659125593|ref|XP_008462765.1| (PREDICTED: uncharacterized protein LOC103501050 [Cucumis melo])

HSP 1 Score: 104.8 bits (260), Expect = 2.0e-19
Identity = 75/207 (36.23%), Postives = 112/207 (54.11%), Query Frame = 1

Query: 12  MHGVQMRSYRFKSTPPRRPYRLSSEKSQVNVSASSHLPVNDEVIVESTTKGAETAPSVSE 71
           MHGV+MR +RFKSTP RRPY LS EK+QVN+  SS+L V+DE +V    +  E+   VS+
Sbjct: 1   MHGVRMRGHRFKSTPSRRPYCLSFEKNQVNLFDSSNLSVHDEKMVGIVAENVESESVVSK 60

Query: 72  THTTDMDNRFVLAKSVNPNIFIYSHESSSFEDVFAPTPGHPPTTNVEAGPSRRSPPIQSS 131
           +H ++MD+     +   P + +        +D+F+       +T V+A  S     ++SS
Sbjct: 61  SHMSEMDSN---ERDDVPLVSLLK------KDLFSKV----GSTIVDALGSSVYSDVRSS 120

Query: 132 IQVDASVTNQSSVSKHNPIDKSTENVGRNDVHVVESPAAAESPAANEHVDPTDTCATNTV 191
           IQ  +    Q SV   NP+ +ST NV   D +V  +          +HV+PTD  A   V
Sbjct: 121 IQTSSLADIQLSVPDPNPVGQSTVNV---DENVANNDGENLDEDVGKHVEPTDNGAPGDV 180

Query: 192 ELDVNDELQLETQQSPGVSRPKGKKVQ 219
           E +VN   Q +++Q     + KGKK+Q
Sbjct: 181 EPNVNAP-QTKSEQPSADPKSKGKKLQ 190

BLAST of MELO3C018191 vs. NCBI nr
Match: gi|659082042|ref|XP_008441636.1| (PREDICTED: uncharacterized protein LOC103485716 [Cucumis melo])

HSP 1 Score: 103.6 bits (257), Expect = 4.5e-19
Identity = 71/206 (34.47%), Postives = 102/206 (49.51%), Query Frame = 1

Query: 15  VQMRSYRFKSTPPRRPYRLSSEKSQVNVSASSHLPVNDEVIVESTTKGAETAPSVSETHT 74
           V  R   +++  P   + + + KS ++     H+  +D+V   S  KG E APSVSETH 
Sbjct: 30  VNTRKGNYQAKLPEVDHEVPASKSTMHGVRIYHVTEHDDVATGSAAKGVENAPSVSETHI 89

Query: 75  TDMD------------------NRFVLAKSVNPNIFIYSHESSSFEDVFAPTPGHPPTTN 134
           +DMD                  +  V  KSV+  I  +S +SSS +DVF PT G    +N
Sbjct: 90  SDMDLDEQDDVLLARLLKKGVASNVVPTKSVDLVISAHSQKSSSSQDVFVPTLGLYHVSN 149

Query: 135 VEAGPSRRSPPIQSSIQVDASVTNQSSVSKHNPIDKSTENVGRNDVHVVESPAAAESPAA 194
            + GPSRR PP++S I     ++N    S+  PI++S    GR DV        A   + 
Sbjct: 150 EKPGPSRRLPPVRSLILNVVPISNPHLESRPIPINESITTEGRTDV-------LASETSD 209

Query: 195 NEHVDPTDTCATNTVELDVNDELQLE 203
            E+V+P  T  TNTVE D N++ Q E
Sbjct: 210 VENVEPAYTSTTNTVEPDANNDFQPE 228

BLAST of MELO3C018191 vs. NCBI nr
Match: gi|659099170|ref|XP_008450465.1| (PREDICTED: uncharacterized protein LOC103492059 [Cucumis melo])

HSP 1 Score: 103.2 bits (256), Expect = 5.8e-19
Identity = 64/135 (47.41%), Postives = 77/135 (57.04%), Query Frame = 1

Query: 84  AKSVNPNIFIYSHESSSFEDVFAPTPGHPPTTNVEAGPSRRSPPIQSSIQVDASVTNQSS 143
           AKS +P I   S ESSSFEDVF PTP     +N E GPS+ S   +SSI  D    N+ S
Sbjct: 26  AKSADPTISARSQESSSFEDVFVPTPSLHHASNKEPGPSQHSYSDRSSISNDVPTPNRHS 85

Query: 144 VSKHNPIDKSTENVGRNDVHVVESPAAAESPAANEHVDPTDTCATNTVELDVNDELQLET 203
                PID+      R DV   E+P        +E+V+  +T  TNTVELDVN++ Q ET
Sbjct: 86  KPASLPIDEFITIEERTDVSADETP-------DDENVELANTRTTNTVELDVNNDFQPET 145

Query: 204 QQSPGVSRPKGKKVQ 219
           QQ P VSRP GKK Q
Sbjct: 146 QQYPEVSRPTGKKFQ 153

BLAST of MELO3C018191 vs. NCBI nr
Match: gi|659083317|ref|XP_008442287.1| (PREDICTED: uncharacterized protein LOC103486195 [Cucumis melo])

HSP 1 Score: 97.4 bits (241), Expect = 3.2e-17
Identity = 67/186 (36.02%), Postives = 94/186 (50.54%), Query Frame = 1

Query: 38  SQVNVSASSHLPVNDEVIVESTTKGAETAPSVSETHTTDMD------------------N 97
           + ++VS S H+PV++E++V+S  K AE APSVSETH ++MD                  +
Sbjct: 19  TSLHVSESFHVPVHEEIVVKSAVKSAENAPSVSETHVSNMDLDDLDDIPLARLLKKSYAS 78

Query: 98  RFVLAKSVNPNIFIYSHESSSFEDVFAPTPGHPPTTNVEAGPSRRSPPIQSSIQVDASVT 157
              LAK  +P I  +S +SSS EDVF PTPG    +NVE GPS+ SP            +
Sbjct: 79  EVALAKPTDPIISAHSQKSSSSEDVFVPTPGLHHASNVEPGPSQHSP------------S 138

Query: 158 NQSSVSKHNPIDKSTENVGRNDVHVVESPAAAESPAANEHVDPTDTCATNTVELDVNDEL 206
            ++ VS    +           VHV             E V PT+T  TNT+E DV+++ 
Sbjct: 139 GRTRVSADEAL-----------VHV-------------EGVKPTNTDTTNTIEPDVHNDA 168

BLAST of MELO3C018191 vs. NCBI nr
Match: gi|659133530|ref|XP_008466773.1| (PREDICTED: uncharacterized protein LOC103504103 [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 1.6e-16
Identity = 53/115 (46.09%), Postives = 72/115 (62.61%), Query Frame = 1

Query: 12  MHGVQMRSYRFKSTPPRRPYRLSSEKSQVNVSASSHLPVNDEVIVESTTKGAETAPSVSE 71
           MHG++MR+  FKSTP RRPY+L S+KSQVN+  SS + V+DE I +   +  ET   VS+
Sbjct: 1   MHGMRMRARCFKSTPTRRPYQLPSKKSQVNIFESSPISVHDEHISDCAAEDVETTLGVSK 60

Query: 72  THTT--DMDNRFVLAKSVNPNIFIYSH--ESSSFEDVFAPTPGHPPTTNVEAGPS 123
           +H +  D+D R  +    +  +   +H  ES SFED+F PTPGHP  TN   G S
Sbjct: 61  SHVSKMDLDERDDVPLPNSDVLVTTAHFDESFSFEDIFIPTPGHPSATNEGVGDS 115

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E5GBC0_CUCME6.7e-1431.73Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659125593|ref|XP_008462765.1|2.0e-1936.23PREDICTED: uncharacterized protein LOC103501050 [Cucumis melo][more]
gi|659082042|ref|XP_008441636.1|4.5e-1934.47PREDICTED: uncharacterized protein LOC103485716 [Cucumis melo][more]
gi|659099170|ref|XP_008450465.1|5.8e-1947.41PREDICTED: uncharacterized protein LOC103492059 [Cucumis melo][more]
gi|659083317|ref|XP_008442287.1|3.2e-1736.02PREDICTED: uncharacterized protein LOC103486195 [Cucumis melo][more]
gi|659133530|ref|XP_008466773.1|1.6e-1646.09PREDICTED: uncharacterized protein LOC103504103 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C018191T1MELO3C018191T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None