MELO3C018113 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C018113
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTransposable element protein, putative, Retrotrans_gag
Locationchr4 : 10375020 .. 10375460 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAATTCTTCCTGCCTATCGAGAATGCAAGAAGAAGGCAGGACCTAAAGGTCTTCAGACATAGGGATAGAGAGAATTTGAATGACGCATGGTCGATATCCAAGCGTTTGGTGAAAGCATGCCTCCATCATGGCATATCTAAATGTGTGTTGATGGAGAAATTCTACTTTCGGCTAAGTGAGGATGCTCAACAAACTGTTGATGTTGTGTTTGTAGGAGGAGTGTTGAGAAATTCCTACAACCAGACTAAAACAATGCTGGACACCATGATTAGCAATAGCCAAGAATGTAGGGATGATTGCATTAGTTCGCAGCAAGAGAATGGAGAAAACAGAGGAAGAACAGACGAGGGAATGGATAGAAACGCAATGGTGACATTACAAGGACAAGTTACTGAAATGAACAAGTTGCTAAGTCCATGGTGTTATCGAAAGTAA

mRNA sequence

ATGAAGAAATTCTTCCTGCCTATCGAGAATGCAAGAAGAAGGCAGGACCTAAAGGTCTTCAGACATAGGGATAGAGAGAATTTGAATGACGCATGGTCGATATCCAAGCGTTTGGTGAAAGCATGCCTCCATCATGGCATATCTAAATGTGTGTTGATGGAGAAATTCTACTTTCGGCTAAGTGAGGATGCTCAACAAACTGTTGATGTTGTGTTTGTAGGAGGAGTGTTGAGAAATTCCTACAACCAGACTAAAACAATGCTGGACACCATGATTAGCAATAGCCAAGAATGTAGGGATGATTGCATTAGTTCGCAGCAAGAGAATGGAGAAAACAGAGGAAGAACAGACGAGGGAATGGATAGAAACGCAATGGTGACATTACAAGGACAAGTTACTGAAATGAACAAGTTGCTAAGTCCATGGTGTTATCGAAAGTAA

Coding sequence (CDS)

ATGAAGAAATTCTTCCTGCCTATCGAGAATGCAAGAAGAAGGCAGGACCTAAAGGTCTTCAGACATAGGGATAGAGAGAATTTGAATGACGCATGGTCGATATCCAAGCGTTTGGTGAAAGCATGCCTCCATCATGGCATATCTAAATGTGTGTTGATGGAGAAATTCTACTTTCGGCTAAGTGAGGATGCTCAACAAACTGTTGATGTTGTGTTTGTAGGAGGAGTGTTGAGAAATTCCTACAACCAGACTAAAACAATGCTGGACACCATGATTAGCAATAGCCAAGAATGTAGGGATGATTGCATTAGTTCGCAGCAAGAGAATGGAGAAAACAGAGGAAGAACAGACGAGGGAATGGATAGAAACGCAATGGTGACATTACAAGGACAAGTTACTGAAATGAACAAGTTGCTAAGTCCATGGTGTTATCGAAAGTAA

Protein sequence

MKKFFLPIENARRRQDLKVFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQECRDDCISSQQENGENRGRTDEGMDRNAMVTLQGQVTEMNKLLSPWCYRK*
Homology
[Close]
BLAST of MELO3C018113 vs. TrEMBL
Match: A0A0A0K6F9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G307410 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.6e-27
Identity = 66/121 (54.55%), Postives = 86/121 (71.07%), Query Frame = 1 

Query: 19  VFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLR 78
           +F+ RD+EN++D WS  KRLVKAC  HGI +CV ME FYF LS+D  Q V+ +FVGG+LR
Sbjct: 2   IFKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGMLR 61

Query: 79  NSYNQTKTMLDTMISNSQECRDDCISSQQENGENRGRTDEGMDRNAMVTLQGQVTEMNKL 138
           +SYNQ K  LD+M +NSQE  D    S+     +RGRT EG+D++ +V LQGQ+  MN L
Sbjct: 62  SSYNQIKATLDSMSNNSQEWDDIGFGSR-----HRGRTKEGLDKSVVVVLQGQMIAMNNL 117

Query: 139 L 140
           L
Sbjct: 122 L 117

[Close]
BLAST of MELO3C018113 vs. TrEMBL
Match: A0A0A0L0Y4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131150 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 7.4e-25
Identity = 62/105 (59.05%), Postives = 76/105 (72.38%), Query Frame = 1 

Query: 38  LVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQE 97
           ++K CLHH I  CV++E+FYF LS D QQ VD VF+GG+LR S N  KT LD M+SNSQE
Sbjct: 1   MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLRLSCNHIKTTLDAMVSNSQE 60

Query: 98  CRDDCISSQQENGENR---GRTDEGMDRNAMVTLQGQVTEMNKLL 140
            RD+   S  E+  NR   GRT++G + NAM+TLQ QVTEMNKLL
Sbjct: 61  WRDNEFGSHNESKGNRREKGRTNKGSNGNAMITLQSQVTEMNKLL 105

[Close]
BLAST of MELO3C018113 vs. TrEMBL
Match: U5CUI2_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s04947p00003620 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.6e-11
Identity = 34/97 (35.05%), Postives = 58/97 (59.79%), Query Frame = 1 

Query: 1   MKKFFLPIENARRRQDLKVFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRL 60
           ++K+F P  NA+ R ++  F+  + E+ +DAW   K L++ C HHGI  C+ ME FY  L
Sbjct: 132 LRKYFPPTRNAKFRSEIMSFQQLEDESTSDAWERFKELLRKCPHHGIPHCIQMETFYNGL 191

Query: 61  SEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQE 98
           +  ++  +D    G +L  SYN+   +L+T+ SN+ +
Sbjct: 192 NAASRMVLDASANGAILSKSYNEAFEILETIASNNYQ 228

[Close]
BLAST of MELO3C018113 vs. TrEMBL
Match: Q2AA09_ASPOF (Retrotransposon gag protein OS=Asparagus officinalis GN=20.t00008 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 9.1e-07
Identity = 28/94 (29.79%), Postives = 49/94 (52.13%), Query Frame = 1 

Query: 1   MKKFFLPIENARRRQDLKVFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRL 60
           + K+F P + A+ R  +  F  ++ E+L DAW   K L++ C HHG+   +++  FY  L
Sbjct: 45  LAKYFPPSKTAQLRNQITTFTQKEGESLYDAWERYKDLLRMCPHHGLEDWLIIHTFYNGL 104

Query: 61  SEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISN 95
             + + TVD    G ++  S    K +++ M  N
Sbjct: 105 LYNTRMTVDAAAGGALMNKSVRDAKQLIEDMAQN 138

[Close]
BLAST of MELO3C018113 vs. NCBI nr
Match: gi|700189251|gb|KGN44484.1| (hypothetical protein Csa_7G307410 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 2.3e-27
Identity = 66/121 (54.55%), Postives = 86/121 (71.07%), Query Frame = 1 

Query: 19  VFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLR 78
           +F+ RD+EN++D WS  KRLVKAC  HGI +CV ME FYF LS+D  Q V+ +FVGG+LR
Sbjct: 2   IFKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGMLR 61

Query: 79  NSYNQTKTMLDTMISNSQECRDDCISSQQENGENRGRTDEGMDRNAMVTLQGQVTEMNKL 138
           +SYNQ K  LD+M +NSQE  D    S+     +RGRT EG+D++ +V LQGQ+  MN L
Sbjct: 62  SSYNQIKATLDSMSNNSQEWDDIGFGSR-----HRGRTKEGLDKSVVVVLQGQMIAMNNL 117

Query: 139 L 140
           L
Sbjct: 122 L 117

[Close]
BLAST of MELO3C018113 vs. NCBI nr
Match: gi|700198643|gb|KGN53801.1| (hypothetical protein Csa_4G131150 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 1.1e-24
Identity = 62/105 (59.05%), Postives = 76/105 (72.38%), Query Frame = 1 

Query: 38  LVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQE 97
           ++K CLHH I  CV++E+FYF LS D QQ VD VF+GG+LR S N  KT LD M+SNSQE
Sbjct: 1   MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLRLSCNHIKTTLDAMVSNSQE 60

Query: 98  CRDDCISSQQENGENR---GRTDEGMDRNAMVTLQGQVTEMNKLL 140
            RD+   S  E+  NR   GRT++G + NAM+TLQ QVTEMNKLL
Sbjct: 61  WRDNEFGSHNESKGNRREKGRTNKGSNGNAMITLQSQVTEMNKLL 105

[Close]
BLAST of MELO3C018113 vs. NCBI nr
Match: gi|548830333|gb|ERM93404.1| (hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda])

HSP 1 Score: 76.3 bits (186), Expect = 5.1e-11
Identity = 34/97 (35.05%), Postives = 58/97 (59.79%), Query Frame = 1 

Query: 1   MKKFFLPIENARRRQDLKVFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRL 60
           ++K+F P  NA+ R ++  F+  + E+ +DAW   K L++ C HHGI  C+ ME FY  L
Sbjct: 132 LRKYFPPTRNAKFRSEIMSFQQLEDESTSDAWERFKELLRKCPHHGIPHCIQMETFYNGL 191

Query: 61  SEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQE 98
           +  ++  +D    G +L  SYN+   +L+T+ SN+ +
Sbjct: 192 NAASRMVLDASANGAILSKSYNEAFEILETIASNNYQ 228

[Close]
BLAST of MELO3C018113 vs. NCBI nr
Match: gi|985471108|ref|XP_015381156.1| (PREDICTED: uncharacterized protein LOC107174626 [Citrus sinensis])

HSP 1 Score: 74.3 bits (181), Expect = 2.0e-10
Identity = 42/137 (30.66%), Postives = 70/137 (51.09%), Query Frame = 1 

Query: 3   KFFLPIENARRRQDLKVFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRLSE 62
           K+F P +NA+ R ++  F   + E+L DAW   K L++ C HHGI  C+ +  FY  L+ 
Sbjct: 2   KYFPPTKNAKLRNEITSFHQLEDESLCDAWERFKELLRKCPHHGIPYCIQLGTFYNALNP 61

Query: 63  DAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQECRDDCISSQQENGENRGRTDEGMDR 122
             +  VD    G +L  SYN+   +L+ + +N+ +      S++Q       R     + 
Sbjct: 62  STRLMVDASVNGALLSKSYNEAYEILERIANNNYQWP----STRQAAARGTTRVH---NV 121

Query: 123 NAMVTLQGQVTEMNKLL 140
           NA+  L  QVT + K++
Sbjct: 122 NALTALSAQVTSLTKMI 131

[Close]
BLAST of MELO3C018113 vs. NCBI nr
Match: gi|985428736|ref|XP_015382752.1| (PREDICTED: uncharacterized protein LOC107175648 [Citrus sinensis])

HSP 1 Score: 74.3 bits (181), Expect = 2.0e-10
Identity = 34/97 (35.05%), Postives = 55/97 (56.70%), Query Frame = 1 

Query: 1   MKKFFLPIENARRRQDLKVFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRL 60
           + K+FLP +NA+   ++  F   + ENL +AW I K L++ C HHGI  C+ +E FY RL
Sbjct: 118 LMKYFLPTKNAKLHNEITSFHQLEDENLYEAWEIFKELLRRCPHHGIPCCIQLETFYNRL 177

Query: 61  SEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQE 98
           +   +  VD    G +L  SY +   +L+ +  N+ +
Sbjct: 178 NLSTRLMVDASDCGALLSKSYTEAYEILERIAKNNYQ 214

The following BLAST results are available for this feature:
BLAST of MELO3C018113 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6F9_CUCSA1.6e-2754.55Uncharacterized protein OS=Cucumis sativus GN=Csa_7G307410 PE=4 SV=1[more]
A0A0A0L0Y4_CUCSA7.4e-2559.05Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131150 PE=4 SV=1[more]
U5CUI2_AMBTC3.6e-1135.05Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s04947p00003620 PE=4 SV=... [more]
Q2AA09_ASPOF9.1e-0729.79Retrotransposon gag protein OS=Asparagus officinalis GN=20.t00008 PE=4 SV=1[more]
BLAST of MELO3C018113 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189251|gb|KGN44484.1|2.3e-2754.55hypothetical protein Csa_7G307410 [Cucumis sativus][more]
gi|700198643|gb|KGN53801.1|1.1e-2459.05hypothetical protein Csa_4G131150 [Cucumis sativus][more]
gi|548830333|gb|ERM93404.1|5.1e-1135.05hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda][more]
gi|985471108|ref|XP_015381156.1|2.0e-1030.66PREDICTED: uncharacterized protein LOC107174626 [Citrus sinensis][more]
gi|985428736|ref|XP_015382752.1|2.0e-1035.05PREDICTED: uncharacterized protein LOC107175648 [Citrus sinensis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C018113T1MELO3C018113T1mRNA