MELO3C018109 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C018109
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDisease resistance protein (CC-NBS-LRR class) family
Locationchr4 : 10435807 .. 10436172 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAGATACCGGTGAACATAGACAAGATAATAAGCGAGCACATCACAGCATGGGTCAAGCTTCCTCGCAGAGCAAGACCTTTCCCATACCTAATCGAAAAACTGTGTTTAAAGGCATGTCCAGCGTTAGACAAACTTCCTCAGGTAGAGGTGAAGGATGAGGTTTGGTCCAACTCAATTCGTCACCACATAATTGCCATCCATAAGAATAAGACTAAGCTAAAACGCCTCAAAACCAAACAAGATGGTAAATTAGAGGTTGAAGTAGTGGAAGATAAAGATGAAGAAGAGAAAGAGGAAGATGATATCCCGTTAAAACACAAACGACAGACGAAGAGGAGGCCTCAGAATCAAAGAAAATAA

mRNA sequence

ATGGAGGAGATACCGGTGAACATAGACAAGATAATAAGCGAGCACATCACAGCATGGGTCAAGCTTCCTCGCAGAGCAAGACCTTTCCCATACCTAATCGAAAAACTGTGTTTAAAGGCATGTCCAGCGTTAGACAAACTTCCTCAGGTAGAGGTGAAGGATGAGGTTTGGTCCAACTCAATTCGTCACCACATAATTGCCATCCATAAGAATAAGACTAAGCTAAAACGCCTCAAAACCAAACAAGATGGTAAATTAGAGGTTGAAGTAGTGGAAGATAAAGATGAAGAAGAGAAAGAGGAAGATGATATCCCGTTAAAACACAAACGACAGACGAAGAGGAGGCCTCAGAATCAAAGAAAATAA

Coding sequence (CDS)

ATGGAGGAGATACCGGTGAACATAGACAAGATAATAAGCGAGCACATCACAGCATGGGTCAAGCTTCCTCGCAGAGCAAGACCTTTCCCATACCTAATCGAAAAACTGTGTTTAAAGGCATGTCCAGCGTTAGACAAACTTCCTCAGGTAGAGGTGAAGGATGAGGTTTGGTCCAACTCAATTCGTCACCACATAATTGCCATCCATAAGAATAAGACTAAGCTAAAACGCCTCAAAACCAAACAAGATGGTAAATTAGAGGTTGAAGTAGTGGAAGATAAAGATGAAGAAGAGAAAGAGGAAGATGATATCCCGTTAAAACACAAACGACAGACGAAGAGGAGGCCTCAGAATCAAAGAAAATAA

Protein sequence

MEEIPVNIDKIISEHITAWVKLPRRARPFPYLIEKLCLKACPALDKLPQVEVKDEVWSNSIRHHIIAIHKNKTKLKRLKTKQDGKLEVEVVEDKDEEEKEEDDIPLKHKRQTKRRPQNQRK*
Homology
[Close]
BLAST of MELO3C018109 vs. TrEMBL
Match: A0A0A0LAN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.1e-29
Identity = 71/121 (58.68%), Postives = 86/121 (71.07%), Query Frame = 1 

Query: 1   MEEIPVNIDKIISEHITAWVKLPRRARPFPYLIEKLCLKACPALDKLPQVEVKDEVWSNS 60
           M++I VNI KIIS HI A VK PR ARPF YLIE+LCL+AC  L+KLPQVEVKD +W  S
Sbjct: 58  MKKILVNIGKIISNHIIALVKHPRGARPFSYLIEQLCLRACLMLEKLPQVEVKDGIWLPS 117

Query: 61  IRHHIIAIHKNKTKLKRLKTKQDGKLEVEVVEDKDEEEKEEDDIPLKHKRQTKRRPQNQR 120
             H IIAIHKNK K+K LKTK+  K+  E+ +D  EEE ++D+IP K KRQ K      +
Sbjct: 118 TLHRIIAIHKNKAKIKCLKTKEGCKVVKEIDDDDVEEEDKKDNIPQKRKRQDKEDDLGSK 177

Query: 121 K 122
           K
Sbjct: 178 K 178

[Close]
BLAST of MELO3C018109 vs. TrEMBL
Match: A0A0A0LHW9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G145890 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.3e-14
Identity = 49/83 (59.04%), Postives = 59/83 (71.08%), Query Frame = 1 

Query: 1  MEEIPVNIDKIISEHITAWVKLPRRARPFPYLIEKLCLKACPALDKLPQVEVKDEVWSNS 60
          M+EI VNI KIISEHI AWVKLP+  R F +LI KL LKAC AL+KLPQV+V+D VW+  
Sbjct: 11 MKEISVNIGKIISEHILAWVKLPQETRFFLHLINKLRLKACLALEKLPQVKVEDGVWTPL 70

Query: 61 IRHHIIAIHKNKTKLKRLKTKQD 84
            H II   +N++K    KT QD
Sbjct: 71 TLHCIIRYSQNQSK---DKTPQD 90

[Close]
BLAST of MELO3C018109 vs. TrEMBL
Match: A0A0A0LAY9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G511970 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-08
Identity = 44/112 (39.29%), Postives = 63/112 (56.25%), Query Frame = 1 

Query: 1   MEEIPVNIDKIISEHITAWVKLPRRARPFPYLIEKLCLKACPALDKLPQVEVKDEVWSNS 60
           MEEIPVN+ +II +HI AW+K P   RPF +LIEKLCLKAC    K  Q++V+D   SN 
Sbjct: 126 MEEIPVNVGEIICKHILAWIKHPHDGRPFLHLIEKLCLKAC-LTKKESQIKVEDVDESNE 185

Query: 61  IRHHIIAIHKNKTKLKRLKTKQDGKLEV--EVVEDKDEEEKEEDDIPLKHKR 111
                    ++ ++   L  K   + EV  + ++D  +E KE   +  + KR
Sbjct: 186 EEES----EEDNSEKATLSPKVSLRREVRKDDIDDPLQEGKETTSMVDRDKR 232

[Close]
BLAST of MELO3C018109 vs. NCBI nr
Match: gi|700202594|gb|KGN57727.1| (hypothetical protein Csa_3G263250 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 5.9e-29
Identity = 71/121 (58.68%), Postives = 86/121 (71.07%), Query Frame = 1 

Query: 1   MEEIPVNIDKIISEHITAWVKLPRRARPFPYLIEKLCLKACPALDKLPQVEVKDEVWSNS 60
           M++I VNI KIIS HI A VK PR ARPF YLIE+LCL+AC  L+KLPQVEVKD +W  S
Sbjct: 58  MKKILVNIGKIISNHIIALVKHPRGARPFSYLIEQLCLRACLMLEKLPQVEVKDGIWLPS 117

Query: 61  IRHHIIAIHKNKTKLKRLKTKQDGKLEVEVVEDKDEEEKEEDDIPLKHKRQTKRRPQNQR 120
             H IIAIHKNK K+K LKTK+  K+  E+ +D  EEE ++D+IP K KRQ K      +
Sbjct: 118 TLHRIIAIHKNKAKIKCLKTKEGCKVVKEIDDDDVEEEDKKDNIPQKRKRQDKEDDLGSK 177

Query: 121 K 122
           K
Sbjct: 178 K 178

[Close]
BLAST of MELO3C018109 vs. NCBI nr
Match: gi|659123193|ref|XP_008461541.1| (PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Cucumis melo])

HSP 1 Score: 100.9 bits (250), Expect = 1.6e-18
Identity = 50/78 (64.10%), Postives = 61/78 (78.21%), Query Frame = 1 

Query: 44  LDKLPQVEVKDEVWSNSIRHHIIAIHKNKTKLKRLKTKQDGKLEVEVVEDKDEEEKEEDD 103
           LDKL QV+VKDE+ S+S  H IIAIHKNK KLK LKTKQDGK +V+ V+D+DEEEKE+DD
Sbjct: 2   LDKLSQVKVKDEILSSSTLHCIIAIHKNKAKLKCLKTKQDGKSKVKTVDDEDEEEKEKDD 61

Query: 104 IPLKHKRQTKRRPQNQRK 122
           +PLK KRQ +      +K
Sbjct: 62  VPLKRKRQGEEEALGSKK 79

[Close]
BLAST of MELO3C018109 vs. NCBI nr
Match: gi|700206371|gb|KGN61490.1| (hypothetical protein Csa_2G145890 [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 1.8e-14
Identity = 49/83 (59.04%), Postives = 59/83 (71.08%), Query Frame = 1 

Query: 1  MEEIPVNIDKIISEHITAWVKLPRRARPFPYLIEKLCLKACPALDKLPQVEVKDEVWSNS 60
          M+EI VNI KIISEHI AWVKLP+  R F +LI KL LKAC AL+KLPQV+V+D VW+  
Sbjct: 11 MKEISVNIGKIISEHILAWVKLPQETRFFLHLINKLRLKACLALEKLPQVKVEDGVWTPL 70

Query: 61 IRHHIIAIHKNKTKLKRLKTKQD 84
            H II   +N++K    KT QD
Sbjct: 71 TLHCIIRYSQNQSK---DKTPQD 90

[Close]
BLAST of MELO3C018109 vs. NCBI nr
Match: gi|700202971|gb|KGN58104.1| (hypothetical protein Csa_3G511970 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-08
Identity = 44/112 (39.29%), Postives = 63/112 (56.25%), Query Frame = 1 

Query: 1   MEEIPVNIDKIISEHITAWVKLPRRARPFPYLIEKLCLKACPALDKLPQVEVKDEVWSNS 60
           MEEIPVN+ +II +HI AW+K P   RPF +LIEKLCLKAC    K  Q++V+D   SN 
Sbjct: 126 MEEIPVNVGEIICKHILAWIKHPHDGRPFLHLIEKLCLKAC-LTKKESQIKVEDVDESNE 185

Query: 61  IRHHIIAIHKNKTKLKRLKTKQDGKLEV--EVVEDKDEEEKEEDDIPLKHKR 111
                    ++ ++   L  K   + EV  + ++D  +E KE   +  + KR
Sbjct: 186 EEES----EEDNSEKATLSPKVSLRREVRKDDIDDPLQEGKETTSMVDRDKR 232

The following BLAST results are available for this feature:
BLAST of MELO3C018109 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAN0_CUCSA4.1e-2958.68Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1[more]
A0A0A0LHW9_CUCSA1.3e-1459.04Uncharacterized protein OS=Cucumis sativus GN=Csa_2G145890 PE=4 SV=1[more]
A0A0A0LAY9_CUCSA1.1e-0839.29Uncharacterized protein OS=Cucumis sativus GN=Csa_3G511970 PE=4 SV=1[more]
BLAST of MELO3C018109 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202594|gb|KGN57727.1|5.9e-2958.68hypothetical protein Csa_3G263250 [Cucumis sativus][more]
gi|659123193|ref|XP_008461541.1|1.6e-1864.10PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Cucumis melo][more]
gi|700206371|gb|KGN61490.1|1.8e-1459.04hypothetical protein Csa_2G145890 [Cucumis sativus][more]
gi|700202971|gb|KGN58104.1|1.5e-0839.29hypothetical protein Csa_3G511970 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C018109T1MELO3C018109T1mRNA