MELO3C018097 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C018097
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionU6 snRNA-associated Sm-like protein LSm4/Small nuclear ribonucleoprotein Sm D1/D3
Locationchr4 : 10608679 .. 10615333 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATCGATAGTCTCTGCCTTTCCCTCTCTCGATCTTTCCGTTCGCCCTAGGACCAGCCTCCGCCGTCTCCCTCCCTCGACGTCATCTCTCCTTACCTCTCCATCGCTCTCCTCCGCTCACCATCTCCCTCTTCTGACGACCAGCAACCCACCGGTTCTCCCTCGCGCTCACCGTCTCCCTATCTCCTCCAGCCGACGCCATCACCTGGCGACCGCCATTGGCCGCTCGACTCATCGGAGACAGCCATCTCGTCGCGCTGCGCCACCATCTGCCACCGCTAGCCTCGCCAAATCTGGAAGTTGAGGTTAGTTTTGGGCTGTCCGGTGAGTTTTGTGGGTTTTTCTTAAAGATCTATGCTACCCTTTAGCCTTTGGCTTCAAATGACTAATTCCTATCACGTTTTGGTATTAGATTGAAGAGTAGCGGTGCCGTTTAATTGCTGTCCAGCGGGTTTTCTTTAAAATTTTGGTACTTAGTAAAGGTGAGAATTATTAAGATGTGAAATAGAGTTTTGGGTAAGGATTTGCTGTTATTTGGGTTTCTTGAGGGTTTTCGATTATCCATCAAGTTTTGACTTTGATTTTGCAATACCCATTACATTTAGTTGTTAGATTTGGAGTCTTTGGAGATTTTAGCCGCTGTCCAGCCTTTAGGAGGATTATGCCTTTTCGCACACAACTTAGGTTAGATTCTAAGCTTTTTGGGGTGGATTTTGAGTACCCATCCAATTTTAGTGATAACATCTAGTAACCCAAAATAGTGGATGCTTGATTTCGAATTTAGAAGGTAGTTAGGATGTTGTCCATTGAAGTTAAGAGTACCTTGCTAAGTTCTTGGGAAGGTTTGGAGTAATTTATTGGGTTTTTCTAGAGTTCTTAAATACCCATTTAATTCTTGTGTTAATATTGAATAGCCCATGATGTTGAAAGCGAGATTTCGAAGTTAGAAGGTCGTTAGGGTGCTGTCCATTGGAATTAAGGCTACTTTGATAAGTCTGAGCATAATCTTTAGCCATAACGCATGCTTTTAAACAAGCTATTGATCCATTGCTATTAAATTGCAAACACTCATTTGCACCTAATAGTCTTATTCTTGCAAGAAGAGATACTTAATCCCAAGTACCATTATCATCTTAGGTGTTCACCTCTCCAATCATCGCGTTGCAATCTTAGGATAAGGGTAAGAGATTTAACAAACGAACATGTAGGAGATGGTAATTGGTCATAAGATATACAAGAAGCAATAGGATAAGGGCAAGAACATATACCTTTATGAAGGGCAATGGGAAGCTCATCTCTTGGTTCTTGATCCATTAACAAGAGTCTTTTGGGACAAAACATTCAACTAGAGGTTGTTGCCGAAGAGAGTAGATTTTAGTTATAGTTGGACGATTAGGGTAGACGTGGGAGGAGATAGATCAAGGGAGGGTGTTGGAAATAGATCAAGGGAGGAGGGAGTTGGAGACGTGAGAGTATAAAGGTAAAGATCCTCCTCCTCTCCTTGATTCGTACTATGCGAAGGGATAGTGAAAGGCTTATCATCAAAGAAACTAACGTCCACAAAATATCTATTCAAATTTGGATAATAACCTATGTATTCGTTTTGAACACGAGAATAGCCTAAGAAAATGCACTTCAAAGACTTGGGGTCTAACTCTATTTAATGAAGACGAACATCTTAAACAAAACAATTACAACCTAATATTTTAGGCTCAACAAGAAACAATGGTTTTGTTGAAAGAGAACATGAGAAGGAGTCTGACCTTGAAGAGCAGACGAAGGCATTTGGTTTATAAGAAAACAAGCTGTGGAAGTTGCATCAACCTGAAAATGCTTTGGAACATGCATTTGAAAGGATAATGCCCGTGCAGTTTTAAGAAGATGTCCATTCTTTTGTTTCGCAACCCTATTTTGGGATTGGAGTATCAGCACAAGATGATTGTATGTACAAAGGTACAAATTGAGTGCTTATGAAAAATACTCCTCGACATTGTCACATCTCGAGGTTTTAAGCACACACCAAACTGCATTAGAATTTCAACATGGAAATTATAGAAATGAGGAAGTAACTCAAAACAATTTTTTCTAAAATATAACCAAGTCATGCAAGAGTGATCATCTACAAAGGTAACAAAATATAGAAATTCAGTTTTGATGCCCTTTGTACATACAATCATCTTGTGCTAAGACGATGAAATTCAGCAAATTGATATGAGTCACAATTCAATGAAGACAAGTTATGTAATTGAGGACAAATCATTCTCAAGGTTGAGAGAGATGGATGACCAGGACGACAATGGGCATCAAAAGGAGAAACAACTCTGGATAAGCAACGATTGTTGATGTCGATACTTGGTGATTGTATCAAAACTATGAAGTCCTTCAAATTCATGTCATTTTCCAATAATCTTTTTTGTTACATGATCTTGAAGCAAGTAATAGCCAAGATAGAATGAGATGCAACAACTAAGGTCAAAACTAATTTGACTAATAGTGATCAAGTTGAATGACAATGAAGGTAAATGTAGGACAAATGACGAGAAAGGGATTGAGGTGAGATTTATAGTGCCAGATCCAATAACAGAAGACTTTGATCCATGTGCTAGGGTAATACCGGTAATGGATGTAGATGACAAAGTTGTAGAAAATAACTTGGGATTACTTGTCATATGAGCGGTAGCACTGGAGTCTATGACCCATTTTGTAGAGGAAAATAGACAATGATTTATGTTACCTGAATTAGCAACGATTATAATAAGGCACATGCTAATGATGAAGGAGATGCTTTCAACGAGTTTTGGTACTTTTGAGATTTAGTACAGCAACCATGGATAGATTGAGCCTGCAAGTGAACCAAATTAGACATCACTATGGGATCTTGTTAGGCCATAGGATAGTAACAACCACACCAGAAGCCACACCAAATCAGCCAGCCACACCAAACCAAATGAGCAAAAAACAGCCACAAAATAGATCAAAACAGCTGCAACCCCTGAAACAGTTGACTTTCTTTCAAATATTGTCACTGTTGAATGGATTTCAATGGAACCGAAGGCTCAAACTGATCGGAAACCAAGATCTGAGATGCATCTTACCAATGATAGCCCAAATTGGAACAGAACAACAACAAACTCTAAAATTAAAAGGGTATTTTTTCGAAGAACGTCACACCTGATTATCTAAAGGAACCAAATGCACAAACCAACAGGAAAACACAAATGGAGACGAACCCAGCACAAAATGGACCTCCCATGCACTCAGATGTGTGAGGGATGAGGCAACGTCTTTTAGCGGTGTGTGAAACTCACGTGCGGCTTCTTCTGACAAGCGACGAACTCAGATATAGGCATTCCTAGAAACCCTAAATAAAGACTAGTGAATTACAATAAAGGACAAAAGTCTAATAAGCTCCTATAGTTACGTATATACTATAATATGAATATATGATCATCTGGGAACTTACATTCTTTTGGTCCTCTTTTTCTACAGGTAGTATCTGCTTCTATTAGTATCTGCTTCTAGTTGTGTCTGCTTCGTATCTTTAAAGATGGTATGTTCCCAAACTTGTTTTTTCATCTGTTCCTATTTTTCTTTTTGATCCACGATTAATTTTGCTCGTGTAACTTCAGAGTGTATTTATTCATTTAATGTCACTGATAAATTAAATTATTTCCTTCAAATGCTTGGTTGTCAGCTGTTGTTTCCGTTTTTCCCTTCATGGGTGTGCTCTAATCGATATTTTTTATTGCAGCTTCCTCTTTCCCTCCTTAAGACTGCTCAAGGACACCCCATGGTAAGGGCTTTCTTTCAGTTGCCTTTCTGTTCATACACAGGAGAGCTTACATGCACCTATAGTAAATTCAAGAGAGAGTATCACATTTGATTGCTACTTTAAAGTTTTGATTGATTTGATATCCAGATAGGTGGGATAATACGTTTCAAATTGAGCCCCTTGAGCTTCTATTATGGTTATTGTTATTATTATTTTGGATTATTTTTTGCTTGGCTCAATCTCTTGTGCCATCCCAGTGATACATGGTGGTTGTATATGGCTTTGCTTTGTCTTGAGCTACTCCGGCTGTTGTCAAGAACTTCTACTCTAGGACTTTGTTTATGTGCTTCTAAAAATGTATAATTTCTGTGTTGCAACAGTTGGTGGAATTAAAAAATGGTGAGACTTACAACGGCCATTTGGTTAATTGTGACACATGGATGAACATCCATCTTCGGGAAGTCATCTGCACTTCTAAAGTAATGCACTTCTATTTTATGGATGATTTTTTTCTCTTTTGGATTTTTCTTCTTTCTTTAGGAGTTTGAACTTATAATGACCATGTTTTCCAATTGTCAAATGTCAGGACGGTGATCGGTTTTGGCGAATGCCCGAATGTTATATTCGTGGTAATACAATCAAGTATTTGCGAGTTCCAGATGAGGTATTTATGAAAACTGTTGCCTTTTTTCCTTTTTAATTGTGTGATGTTTGATGCATCAAAGTACCTTACATCTAACATGTGGATGTAAACAAAAAAGTCAGTTGCCTTAATTTAGTTCTTTTTCCACTTATGTCACATGCTTCTCAGCTGCATCTCATTTTTATTTCTGGTTTCTAATATTATTTTCTCTCTTCTTTGACTTTTACTCGTACAACTTTGTCATCATCTTTAACTTGTGAATGTGATCTTATCGACATCCACCAAAAAGTTATTTAATAAAACTGTTCTTTTTCTTTCTGGTGATTTAAGTTATATCACTCCCTTCTTGTAATTTGCCCTAACTTTAGTGATTTCTCTAGTTTTTGATAAACTGTTTCAGTATTGTTAGCTCTTTCATACATGCATGGACCTGAGTGTACACTTACAAGCTGTTTGGATTCCTCTCTTAAAAACAACAATTATCCCAACAAAAGAGTAGAAACAGAGGCAGCACTCTCTGATTTACTTATATTCAATAAACACAAAGTGAACAAGGAAATATTAACAGAATGACAGAGAAACAGCAAGGAAATACACACCAAAATAGCCCAGCCTTATCATATGGCTGTCGGCTCCTCCCTAAAAGACAGCAGCCTTTTCCTATATAAACCCATCTCACCAATCCCTAAAATTATTCTATTTATACTCATCATTTGTGGGCCCCACCAGCATCATTCTTTTCTTCATTTCTCTTTCCTAGCTCTGCCCCTGTGAAATTACTTTCTTACCCTTCCTTTTGTGTTGATGAATAATCGGGGGTCTTACACATGCACTCCCAAAATGTTCTATTTCACTTATTTTATTGTTTTTCAGGTTATTGACAAAGTTCAGGAAGAAACCAAAAGCCGTGCAGGTATACTGTTTATGCATTTTATAATATATAATGATTGTCAAATGAAGTAAAAAGGTAAAATGTATTTTGCATTTAGGAAATTTGAAATTGTAAAACCAATTAATTCTTGAAGTTCTCCCAAAATAATAATAATAATAAATTAACTCTTAAATCTTTTCTTTCTGGAATCTTGTACATTATCCATGTTGTAAATCTGAAAAAAGATGGACATTCGATAACATCTCATAAAATACTAAATACATTTGCTAAGGTTTGCATGTATCGGACTCTTGATTGTCCAGAACATCTAATGAGTCTAGATAAACTATGCTATTCTAGACCAAGATTAATTTATCCTTTGCCCTTGGTTTCTGACAAGTAAGGAAACTGATGCTTTGACACCAAATTTTCAGATAGAAAACCTCTGGGTGTAGGGCGTGGAAGAGGAAGAGGGCGTGAGGATGGTCCTGGTGGCAGACCAGCTAAAGGAATGGGGAGAGGCTTTGATGATGGTGCGAAAGCTGCTTCTGGCGGCCGTGGAAAGGGTGGCCCTGGTGGGAAACCCGGTGCGAACAGAGGTAAACTAAACTATCTTTGTTATTATGAAACTTGAATTTGCTGTTTTAGCTTCCTCATTTGATAACAGTTTTGCTTTTGCTTTTGCCTTTCTATGCCCTGTATAAACTATATCCCTTATCTATTCAATGTTTTCTTCGTTTAATTTTTCAACCCTTAAGAAGACTTGGGCCAAATTTACAAACGAAATACAGGGGTTTCATAAACTATTTCCGTTTTTCAGTTTTCTAAAATTTAGCTTTGACTTCAAAGTTGACTTGGAGTAGGTTAGAAATTAATGGAAAAGGGTTAAATAGAACAGAGTATAAACAAGAAAAATGTTTGTAAAAAAAGAAAAAAAAAAAAACTATAAACAAAAACGTTTACAAGTGGACTTCTTATCCCATCTTATTAATCTTGTTTTTTCTTTGTCTTTTCTCTTGACATAGTTGGAGGCAGGGGACGAGGTTGATCAGATTGATATCGGTAACAGATGAAATGGACTAACTACATATGCAAGCTCTGCCCAGTTTTCACGTCGGCAGCCGTGTGTTTTCTGTTTTATGCATTTTCTTTTGGTCTGGATTCTTGAGTGAATATTTATGCTGATTGTAGTGCCAGACCTCTGCGAAAGTTGTAAACTAGACAAACGGTTCATTTTAATTAATGGTGTAATTGATTGCAAATTTGGTTTATATTTTTGGGCATTGGAATGTAGATAGTTTCATGTTTCCAGATGTTTTCTATTGGCCTTAGAGAGGCTGTCATAAATTTAGCCCCACAATTATCTGAAAG

mRNA sequence

AATCGATAGTCTCTGCCTTTCCCTCTCTCGATCTTTCCGTTCGCCCTAGGACCAGCCTCCGCCGTCTCCCTCCCTCGACGTCATCTCTCCTTACCTCTCCATCGCTCTCCTCCGCTCACCATCTCCCTCTTCTGACGACCAGCAACCCACCGGTTCTCCCTCGCGCTCACCGTCTCCCTATCTCCTCCAGCCGACGCCATCACCTGGCGACCGCCATTGGCCGCTCGACTCATCGGAGACAGCCATCTCGTCGCGCTGCGCCACCATCTGCCACCGCTAGCCTCGCCAAATCTGGAAGTTGAGATTGAAGAGTAGCGGTGCCGTTTAATTGCTGTCCAGCGGGTTTTCTTTAAAATTTTGGTACTTAGTAAAGGTAGTATCTGCTTCTATTAGTATCTGCTTCTAGTTGTGTCTGCTTCGTATCTTTAAAGATGCTTCCTCTTTCCCTCCTTAAGACTGCTCAAGGACACCCCATGTTGGTGGAATTAAAAAATGGTGAGACTTACAACGGCCATTTGGTTAATTGTGACACATGGATGAACATCCATCTTCGGGAAGTCATCTGCACTTCTAAAGACGGTGATCGGTTTTGGCGAATGCCCGAATGTTATATTCGTGGTAATACAATCAAGTATTTGCGAGTTCCAGATGAGGTTATTGACAAAGTTCAGGAAGAAACCAAAAGCCGTGCAGATAGAAAACCTCTGGGTGTAGGGCGTGGAAGAGGAAGAGGGCGTGAGGATGGTCCTGGTGGCAGACCAGCTAAAGGAATGGGGAGAGGCTTTGATGATGGTGCGAAAGCTGCTTCTGGCGGCCGTGGAAAGGGTGGCCCTGGTGGGAAACCCGGTGCGAACAGAGTTGGAGGCAGGGGACGAGGTTGATCAGATTGATATCGGTAACAGATGAAATGGACTAACTACATATGCAAGCTCTGCCCAGTTTTCACGTCGGCAGCCGTGTGTTTTCTGTTTTATGCATTTTCTTTTGGTCTGGATTCTTGAGTGAATATTTATGCTGATTGTAGTGCCAGACCTCTGCGAAAGTTGTAAACTAGACAAACGGTTCATTTTAATTAATGGTGTAATTGATTGCAAATTTGGTTTATATTTTTGGGCATTGGAATGTAGATAGTTTCATGTTTCCAGATGTTTTCTATTGGCCTTAGAGAGGCTGTCATAAATTTAGCCCCACAATTATCTGAAAG

Coding sequence (CDS)

ATGCTTCCTCTTTCCCTCCTTAAGACTGCTCAAGGACACCCCATGTTGGTGGAATTAAAAAATGGTGAGACTTACAACGGCCATTTGGTTAATTGTGACACATGGATGAACATCCATCTTCGGGAAGTCATCTGCACTTCTAAAGACGGTGATCGGTTTTGGCGAATGCCCGAATGTTATATTCGTGGTAATACAATCAAGTATTTGCGAGTTCCAGATGAGGTTATTGACAAAGTTCAGGAAGAAACCAAAAGCCGTGCAGATAGAAAACCTCTGGGTGTAGGGCGTGGAAGAGGAAGAGGGCGTGAGGATGGTCCTGGTGGCAGACCAGCTAAAGGAATGGGGAGAGGCTTTGATGATGGTGCGAAAGCTGCTTCTGGCGGCCGTGGAAAGGGTGGCCCTGGTGGGAAACCCGGTGCGAACAGAGTTGGAGGCAGGGGACGAGGTTGA

Protein sequence

MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDDGAKAASGGRGKGGPGGKPGANRVGGRGRG*
Homology
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BLAST of MELO3C018097 vs. Swiss-Prot
Match: LSM4_TOBAC (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 4.8e-65
Identity = 123/150 (82.00%), Postives = 125/150 (83.33%), Query Frame = 1 

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGR-GREDGPGGRPAKGMGRGFD 120
           +RGNTIKYLRVPDEVIDKVQEE KSR DRKP GVGR R R GR+D   GR  KG+GRG D
Sbjct: 61  VRGNTIKYLRVPDEVIDKVQEEAKSRTDRKPPGVGRARARGGRDDSAVGRQPKGIGRGMD 120

Query: 121 DGAKAASGGRGKGGPGGKPGANRVGGRGRG 150
           DG    + GRGKGGP  K G  R GGRGRG
Sbjct: 121 DG---GAKGRGKGGPSAKSG-GRGGGRGRG 146

[Close]
BLAST of MELO3C018097 vs. Swiss-Prot
Match: LSM4_ORYSJ (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa subsp. japonica GN=Os01g0256900 PE=2 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 4.1e-64
Identity = 124/151 (82.12%), Postives = 128/151 (84.77%), Query Frame = 1 

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGD+FWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEET-KSRADRKPLGVGRGRGRGR-EDGPGGRPAKGMGRGF 120
           IRGNTIKYLRVPDEVIDKVQEET KSR+DR+P GVGRGRGRG     PGGR   G+GRG 
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETSKSRSDRRPPGVGRGRGRGDIGTKPGGR---GIGRGQ 120

Query: 121 DDGAKAASGGRGKGGPGGKPGANRVGGRGRG 150
           DDG     GGRG+GG GGK G  + GGRGRG
Sbjct: 121 DDGGSKGGGGRGRGGIGGK-GGIKGGGRGRG 147

[Close]
BLAST of MELO3C018097 vs. Swiss-Prot
Match: LSM4_FAGSY (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus sylvatica GN=LSM4 PE=2 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.6e-63
Identity = 121/150 (80.67%), Postives = 124/150 (82.67%), Query Frame = 1 

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELK+GETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMP+CY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRG-FD 120
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKP GVGRGRGRGRE+G G R  +G GR    
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRGREEGSGARQVRGAGRDVMM 120

Query: 121 DGAKAASGGRGKGGPGGKPGANRVGGRGRG 150
             AKA    RG+G   GK G    GGRGRG
Sbjct: 121 QVAKAWVEVRGRGASAGKSGGR--GGRGRG 148

[Close]
BLAST of MELO3C018097 vs. Swiss-Prot
Match: LSM4_ARATH (Sm-like protein LSM4 OS=Arabidopsis thaliana GN=LSM4 PE=1 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 9.7e-58
Identity = 115/149 (77.18%), Postives = 117/149 (78.52%), Query Frame = 1 

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEE K+R DRKP GVGRGRGRG +DG               
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEE-KTRTDRKPPGVGRGRGRGVDDG--------------- 120

Query: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 150
           GA+    GRG+G   GK G NR  GRGRG
Sbjct: 121 GAR----GRGRGTSMGKMGGNRGAGRGRG 129

[Close]
BLAST of MELO3C018097 vs. Swiss-Prot
Match: LSM4_MOUSE (U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus GN=Lsm4 PE=1 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 9.5e-45
Identity = 90/140 (64.29%), Postives = 100/140 (71.43%), Query Frame = 1 

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQ HPMLVELKNGETYNGHLV+CD WMNI+LREVICTS+DGD+FWRMPECY
Sbjct: 1   MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRG-FD 120
           IRG+TIKYLR+PDE+ID V+EE            GRGRG  ++    GR   G GRG F 
Sbjct: 61  IRGSTIKYLRIPDEIIDMVREEAAK---------GRGRGGPQQKQQKGRGMGGAGRGVFG 120

Query: 121 DGAKAASGGRGKGGPGGKPG 140
              +    G G+G P  KPG
Sbjct: 121 GRGRGGIPGAGRGQPEKKPG 131

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BLAST of MELO3C018097 vs. TrEMBL
Match: A0A0A0L3Q6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G486190 PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 6.1e-83
Identity = 148/149 (99.33%), Postives = 148/149 (99.33%), Query Frame = 1 

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 96  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 155

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPG RPAKGMGRGFDD
Sbjct: 156 IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDD 215

Query: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 150
           GAKAASGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 216 GAKAASGGRGKGGPGGKPGANRVGGRGRG 244

[Close]
BLAST of MELO3C018097 vs. TrEMBL
Match: A0A0A0K9I4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G302350 PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 6.1e-83
Identity = 148/149 (99.33%), Postives = 148/149 (99.33%), Query Frame = 1 

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPG RPAKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDD 120

Query: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 150
           GAKAASGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 149

[Close]
BLAST of MELO3C018097 vs. TrEMBL
Match: I1NB52_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 1.6e-75
Identity = 139/150 (92.67%), Postives = 141/150 (94.00%), Query Frame = 1 

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKP GVGRGRGRGREDGPGGRPAKG+GRG DD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRGREDGPGGRPAKGIGRGLDD 120

Query: 121 -GAKAASGGRGKGGPGGKPGANRVGGRGRG 150
            GAK A GGRG+GGP GKPG NR  GRGRG
Sbjct: 121 GGAKGAGGGRGRGGPSGKPGGNR--GRGRG 148

[Close]
BLAST of MELO3C018097 vs. TrEMBL
Match: A0A0B2S9U8_GLYSO (Putative U6 snRNA-associated Sm-like protein LSm4 OS=Glycine soja GN=glysoja_002099 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 1.6e-75
Identity = 139/150 (92.67%), Postives = 141/150 (94.00%), Query Frame = 1 

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKP GVGRGRGRGREDGPGGRPAKG+GRG DD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRGREDGPGGRPAKGIGRGLDD 120

Query: 121 -GAKAASGGRGKGGPGGKPGANRVGGRGRG 150
            GAK A GGRG+GGP GKPG NR  GRGRG
Sbjct: 121 GGAKGAGGGRGRGGPSGKPGGNR--GRGRG 148

[Close]
BLAST of MELO3C018097 vs. TrEMBL
Match: A0A0B2P7T6_GLYSO (Putative U6 snRNA-associated Sm-like protein LSm4 OS=Glycine soja GN=glysoja_010957 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 2.7e-75
Identity = 134/149 (89.93%), Postives = 137/149 (91.95%), Query Frame = 1 

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETKSR DRKP GVGRGRGRGREDGPGGR  KG+GRG D+
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRQPKGIGRGLDE 120

Query: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 150
           G     GGRG+GGPGGKPG NR GGRGRG
Sbjct: 121 GGPKGQGGRGRGGPGGKPGGNRGGGRGRG 149

[Close]
BLAST of MELO3C018097 vs. TAIR10
Match: AT5G27720.1 (AT5G27720.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 224.2 bits (570), Expect = 5.5e-59
Identity = 115/149 (77.18%), Postives = 117/149 (78.52%), Query Frame = 1 

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEE K+R DRKP GVGRGRGRG +DG               
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEE-KTRTDRKPPGVGRGRGRGVDDG--------------- 120

Query: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 150
           GA+    GRG+G   GK G NR  GRGRG
Sbjct: 121 GAR----GRGRGTSMGKMGGNRGAGRGRG 129

[Close]
BLAST of MELO3C018097 vs. TAIR10
Match: AT1G20580.1 (AT1G20580.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 79.3 bits (194), Expect = 2.2e-15
Identity = 48/138 (34.78%), Postives = 73/138 (52.90%), Query Frame = 1 

Query: 2   LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
           +P+ LL  A GH + VELK+GE Y G ++ C+   N  L ++  T+KDG +  ++   +I
Sbjct: 7   IPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDG-KVSQLEHVFI 66

Query: 62  RGNTIKYLRVPD-----EVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGR 121
           RG+ ++++ +PD      +  ++    K ++    LGVGRGRG  R     G+PA G GR
Sbjct: 67  RGSKVRFMVIPDILKHAPMFKRLDARIKGKS--SSLGVGRGRGAMR-----GKPAAGPGR 126

Query: 122 GFDDGAKAASGGRGKGGP 135
           G        +GGRG   P
Sbjct: 127 G--------TGGRGAVPP 128

[Close]
BLAST of MELO3C018097 vs. TAIR10
Match: AT1G76300.1 (AT1G76300.1 snRNP core protein SMD3)

HSP 1 Score: 74.7 bits (182), Expect = 5.4e-14
Identity = 44/134 (32.84%), Postives = 70/134 (52.24%), Query Frame = 1 

Query: 2   LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
           +P+ LL  + GH + VE+K+GE Y G ++ C+   N  L  +  T+KDG +  ++   +I
Sbjct: 7   IPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDG-KVSQLEHVFI 66

Query: 62  RGNTIKYLRVPDEVID-KVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 121
           RG+ +++L +PD + +  + ++ + +     LGVGRGRG           AKG GRG   
Sbjct: 67  RGSLVRFLVIPDMLKNAPMFKDVRGKGKSASLGVGRGRGAAMR-------AKGTGRG--- 125

Query: 122 GAKAASGGRGKGGP 135
                 GGRG   P
Sbjct: 127 ----TGGGRGAVPP 125

[Close]
BLAST of MELO3C018097 vs. TAIR10
Match: AT2G05580.1 (AT2G05580.1 Glycine-rich protein family)

HSP 1 Score: 51.6 bits (122), Expect = 4.9e-07
Identity = 33/80 (41.25%), Postives = 43/80 (53.75%), Query Frame = 1 

Query: 73  DEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPA-KGMGRGFDDGAKAASGGRG- 132
           DEV+D  +EE    +     G+GRG+G  +  G GG+   KG G G   G K   GG+G 
Sbjct: 62  DEVLDGEEEE---ESKNNQGGIGRGQGGQKGGGGGGQGGQKGGGGGGQGGQKGGGGGQGG 121

Query: 133 -KGGPGGKPGANRVGGRGRG 150
            KGG GG+ G    GG G+G
Sbjct: 122 QKGGGGGQGGQKGGGGGGQG 138


HSP 2 Score: 39.7 bits (91), Expect = 1.9e-03
Identity = 24/57 (42.11%), Postives = 28/57 (49.12%), Query Frame = 1 

Query: 95  GRGRGRGREDGPGGRPAKGMGRGFDDGAKAASGGRG--KGGPGGKPGANRVGGRGRG 150
           G G G+G + G GG    G   G   G +   GG+G  KGG GG+ G    GGRG+G
Sbjct: 143 GGGGGQGGQKGGGGGGQGGQKGGGGQGGQKGGGGQGGQKGG-GGQGGQKGGGGRGQG 198


HSP 3 Score: 38.1 bits (87), Expect = 5.6e-03
Identity = 24/57 (42.11%), Postives = 27/57 (47.37%), Query Frame = 1 

Query: 97  GRGRGREDGPGGRPA---KGMGRGFDDGAKAASGGRGKGG-PGGKPGANRVGGRGRG 150
           G G+G + G GGR     KG G G   G K   GG G+GG  GG  G  + G +G G
Sbjct: 183 GGGQGGQKGGGGRGQGGMKGGGGGGQGGHKGGGGGGGQGGHKGGGGGGGQGGHKGGG 239

[Close]
BLAST of MELO3C018097 vs. NCBI nr
Match: gi|659109077|ref|XP_008454536.1| (PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo])

HSP 1 Score: 318.2 bits (814), Expect = 7.9e-84
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1 

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120

Query: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 150
           GAKAASGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 149

[Close]
BLAST of MELO3C018097 vs. NCBI nr
Match: gi|700199613|gb|KGN54771.1| (hypothetical protein Csa_4G486190 [Cucumis sativus])

HSP 1 Score: 314.7 bits (805), Expect = 8.7e-83
Identity = 148/149 (99.33%), Postives = 148/149 (99.33%), Query Frame = 1 

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 96  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 155

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPG RPAKGMGRGFDD
Sbjct: 156 IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDD 215

Query: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 150
           GAKAASGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 216 GAKAASGGRGKGGPGGKPGANRVGGRGRG 244

[Close]
BLAST of MELO3C018097 vs. NCBI nr
Match: gi|778694870|ref|XP_011653886.1| (PREDICTED: sm-like protein LSM4 [Cucumis sativus])

HSP 1 Score: 314.7 bits (805), Expect = 8.7e-83
Identity = 148/149 (99.33%), Postives = 148/149 (99.33%), Query Frame = 1 

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPG RPAKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDD 120

Query: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 150
           GAKAASGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 149

[Close]
BLAST of MELO3C018097 vs. NCBI nr
Match: gi|659123987|ref|XP_008461936.1| (PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo])

HSP 1 Score: 307.4 bits (786), Expect = 1.4e-80
Identity = 146/149 (97.99%), Postives = 146/149 (97.99%), Query Frame = 1 

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPE Y
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPEFY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGR AKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRSAKGMGRGFDD 120

Query: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 150
           GAKAASGGRGKGGPGGKPGA RVGGRGRG
Sbjct: 121 GAKAASGGRGKGGPGGKPGAIRVGGRGRG 149

[Close]
BLAST of MELO3C018097 vs. NCBI nr
Match: gi|1012026782|ref|XP_015951102.1| (PREDICTED: sm-like protein LSM4 [Arachis duranensis])

HSP 1 Score: 292.7 bits (748), Expect = 3.6e-76
Identity = 138/150 (92.00%), Postives = 140/150 (93.33%), Query Frame = 1 

Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETKSR DRKP GVGRGRGRGREDGPGGRPAKGMGRG D+
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRGDRKPPGVGRGRGRGREDGPGGRPAKGMGRGLDE 120

Query: 121 -GAKAASGGRGKGGPGGKPGANRVGGRGRG 150
            GAK   GGRG+GGPGGKPG NR  GRGRG
Sbjct: 121 GGAKGPGGGRGRGGPGGKPGGNRGAGRGRG 150

The following BLAST results are available for this feature:
BLAST of MELO3C018097 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LSM4_TOBAC4.8e-6582.00Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum PE=2 SV=1[more]
LSM4_ORYSJ4.1e-6482.12Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa subsp. japonic... [more]
LSM4_FAGSY2.6e-6380.67Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus sylvatica GN=LSM4 PE=... [more]
LSM4_ARATH9.7e-5877.18Sm-like protein LSM4 OS=Arabidopsis thaliana GN=LSM4 PE=1 SV=1[more]
LSM4_MOUSE9.5e-4564.29U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus GN=Lsm4 PE=1 SV=1[more]
BLAST of MELO3C018097 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3Q6_CUCSA6.1e-8399.33Uncharacterized protein OS=Cucumis sativus GN=Csa_4G486190 PE=4 SV=1[more]
A0A0A0K9I4_CUCSA6.1e-8399.33Uncharacterized protein OS=Cucumis sativus GN=Csa_7G302350 PE=4 SV=1[more]
I1NB52_SOYBN1.6e-7592.67Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B2S9U8_GLYSO1.6e-7592.67Putative U6 snRNA-associated Sm-like protein LSm4 OS=Glycine soja GN=glysoja_002... [more]
A0A0B2P7T6_GLYSO2.7e-7589.93Putative U6 snRNA-associated Sm-like protein LSm4 OS=Glycine soja GN=glysoja_010... [more]
BLAST of MELO3C018097 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G27720.15.5e-5977.18 Small nuclear ribonucleoprotein family protein[more]
AT1G20580.12.2e-1534.78 Small nuclear ribonucleoprotein family protein[more]
AT1G76300.15.4e-1432.84 snRNP core protein SMD3[more]
AT2G05580.14.9e-0741.25 Glycine-rich protein family[more]
BLAST of MELO3C018097 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659109077|ref|XP_008454536.1|7.9e-84100.00PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo][more]
gi|700199613|gb|KGN54771.1|8.7e-8399.33hypothetical protein Csa_4G486190 [Cucumis sativus][more]
gi|778694870|ref|XP_011653886.1|8.7e-8399.33PREDICTED: sm-like protein LSM4 [Cucumis sativus][more]
gi|659123987|ref|XP_008461936.1|1.4e-8097.99PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo][more]
gi|1012026782|ref|XP_015951102.1|3.6e-7692.00PREDICTED: sm-like protein LSM4 [Arachis duranensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf
IPR027141LSm4/Sm_D1/D3
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006396 RNA processing
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU44558melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C018097T1MELO3C018097T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU44558MU44558transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 6..70
score: 6.2
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 5..71
score: 1.4
IPR010920LSM domainunknownSSF50182Sm-like ribonucleoproteinscoord: 3..113
score: 1.71
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 1..148
score: 1.2
NoneNo IPR availableGENE3DG3DSA:2.30.30.100coord: 1..73
score: 9.5
NoneNo IPR availablePANTHERPTHR23338:SF24SUBFAMILY NOT NAMEDcoord: 1..148
score: 1.2