MELO3C017950 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C017950
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Late embryogenesis abundant protein
Location	chr7 : 26077782 .. 26078485 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACACTCAAATTGCGACACACACAAAAACACCCACAACTCCCTTTTTTTCTTTCTAAACCCAAAACATTCATTTCAAATTAATCAACCATGCCTTTGCCTTCATCTTTCTCCACCCTCTCCACTCTCTTCAGGTTTGTTCAAATAATCTCTCTCTCCCCCTTTTCTTTCCACTTCCTTCTACTTAGTTAAATTATAAATTTAGAAAAATTAATTATTGATCATGTGTGATCCTACAGGCGGGGATACGCGACGGCGTCTGCAGAAGGAGTTGCGGCTAGAATTAGCAGCATTATGAAGAAGAAGGAAGAATCTTTAAGAATTGGTAGAGAGAAGATGGCAGTGTCGTGGGTTCCAGACCCCGTTACCGGTTATTATAGACCGGAGAACTGTGGGGCGGAGATGGACGCTGCCGATCTCCGGGCAATGCTCCTAAACCCAGCAACAAAGTAATTTATTTAATCAATCTGTAAAGCTAATTAAGAACGTAGAATCGAGAGGTTTAGCGTGAGAGGAATTAGGATTGGATAATATTGTTGGGAGAATTACATGCCACAACACAAATTGGTGAGGTACACAAGCAGATAGGTAGTATTACTCCAGGATCAACCAAAATATTTTTCTTACCATCTTTGGAAGTGTCTGCTGTGCTGTTACAATTATTACTATTAGTTCAATAAAATTTTTACATATATAGTTGTGGATCC

mRNA sequence

ACACTCAAATTGCGACACACACAAAAACACCCACAACTCCCTTTTTTTCTTTCTAAACCCAAAACATTCATTTCAAATTAATCAACCATGCCTTTGCCTTCATCTTTCTCCACCCTCTCCACTCTCTTCAGGCGGGGATACGCGACGGCGTCTGCAGAAGGAGTTGCGGCTAGAATTAGCAGCATTATGAAGAAGAAGGAAGAATCTTTAAGAATTGGTAGAGAGAAGATGGCAGTGTCGTGGGTTCCAGACCCCGTTACCGGTTATTATAGACCGGAGAACTGTGGGGCGGAGATGGACGCTGCCGATCTCCGGGCAATGCTCCTAAACCCAGCAACAAAGTAATTTATTTAATCAATCTGTAAAGCTAATTAAGAACGTAGAATCGAGAGGTTTAGCGTGAGAGGAATTAGGATTGGATAATATTGTTGGGAGAATTACATGCCACAACACAAATTGGTGAGGTACACAAGCAGATAGGTAGTATTACTCCAGGATCAACCAAAATATTTTTCTTACCATCTTTGGAAGTGTCTGCTGTGCTGTTACAATTATTACTATTAGTTCAATAAAATTTTTACATATATAGTTGTGGATCC

Coding sequence (CDS)

ATGCCTTTGCCTTCATCTTTCTCCACCCTCTCCACTCTCTTCAGGCGGGGATACGCGACGGCGTCTGCAGAAGGAGTTGCGGCTAGAATTAGCAGCATTATGAAGAAGAAGGAAGAATCTTTAAGAATTGGTAGAGAGAAGATGGCAGTGTCGTGGGTTCCAGACCCCGTTACCGGTTATTATAGACCGGAGAACTGTGGGGCGGAGATGGACGCTGCCGATCTCCGGGCAATGCTCCTAAACCCAGCAACAAAGTAA

Protein sequence

MPLPSSFSTLSTLFRRGYATASAEGVAARISSIMKKKEESLRIGREKMAVSWVPDPVTGYYRPENCGAEMDAADLRAMLLNPATK*

Homology

[Close]

BLAST of MELO3C017950 vs. Swiss-Prot
Match: SAG21_ARATH (Protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial OS=Arabidopsis thaliana GN=SAG21 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.1e-11
Identity = 40/80 (50.00%), Postives = 48/80 (60.00%), Query Frame = 1


Query: 11 STLFRRGYATASAEGVA-------ARISSIMKKK--EESLRIGREKMAVSWVPDPVTGYY 70
          + +FRRGYA  +A+G         A  S++MKKK  EES +       +SWVPDP TGYY
Sbjct: 21 NAIFRRGYAATAAQGSVSSGGRSGAVASAVMKKKGVEESTQ------KISWVPDPKTGYY 80

Query: 71 RPENCGAEMDAADLRAMLLN 82
          RPE    E+DAA+LRA LLN
Sbjct: 81 RPETGSNEIDAAELRAALLN 94

[Close]

BLAST of MELO3C017950 vs. Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 8.7e-11
Identity = 38/78 (48.72%), Postives = 43/78 (55.13%), Query Frame = 1


Query: 12 TLFRRGYATASAEGVAARIS--SIMKKKE------ESLRIGREKMAVSWVPDPVTGYYRP 71
          ++ RRGY+ A    V A       M K E      ES        + +W PDPVTGYYRP
Sbjct: 22 SISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRP 81

Query: 72 ENCGAEMDAADLRAMLLN 82
          ENCGAE+DAADLR M+LN
Sbjct: 82 ENCGAEIDAADLREMMLN 99

[Close]

BLAST of MELO3C017950 vs. Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-10
Identity = 38/78 (48.72%), Postives = 43/78 (55.13%), Query Frame = 1


Query: 12 TLFRRGYATASAEGVAARIS--SIMKKKE------ESLRIGREKMAVSWVPDPVTGYYRP 71
          ++ RRGY+ A    V A       M K E      ES        + +W PDPVTGYYRP
Sbjct: 22 SISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRP 81

Query: 72 ENCGAEMDAADLRAMLLN 82
          ENCGAE+DAA+LR MLLN
Sbjct: 82 ENCGAEIDAAELREMLLN 99

[Close]

BLAST of MELO3C017950 vs. Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 7.4e-10
Identity = 34/71 (47.89%), Postives = 44/71 (61.97%), Query Frame = 1


Query: 12 TLFRRGYATASAEGVAARISSIMKKKEESLRIGREKMAVS-WVPDPVTGYYRPENCGAEM 71
          ++ RRGYA A+  G  +R + IM+K +    +  +  A S W PDP+TGYYRPEN   E+
Sbjct: 22 SISRRGYAAAAPLGTISR-TGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEI 81

Query: 72 DAADLRAMLLN 82
          D A+LR MLLN
Sbjct: 82 DPAELREMLLN 91

[Close]

BLAST of MELO3C017950 vs. Swiss-Prot
Match: ARG2_VIGRR (Indole-3-acetic acid-induced protein ARG2 OS=Vigna radiata var. radiata GN=ARG2 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.3e-08
Identity = 35/77 (45.45%), Postives = 44/77 (57.14%), Query Frame = 1


Query: 11 STLFRRGYATASAE-------GVAARISSIMKKKEESLRIGREKMAVSWVPDPVTGYYRP 70
          +T  R G+A A+A        G +   + + K  EE +R G +   VSWVPDPVTGYYRP
Sbjct: 21 NTTTRHGFAAAAAATQSATRGGASIGGNMVPKSGEEKVRGGEK---VSWVPDPVTGYYRP 80

Query: 71 ENCGAEMDAADLRAMLL 81
          EN   E+D AD+RA +L
Sbjct: 81 ENTN-EIDVADMRATVL 93

[Close]

BLAST of MELO3C017950 vs. TrEMBL
Match: A0A0A0KTB8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001850 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.0e-30
Identity = 73/86 (84.88%), Postives = 76/86 (88.37%), Query Frame = 1


Query: 3  LPSSFSTLSTL---FRRGYATASAEGVAARISSIMKKKEESLRIGREKMAVSWVPDPVTG 62
          +PS FSTL+TL   FRRGYATA  EGVAAR+  IMKKKEESLRIGREK AVSWVPDPVTG
Sbjct: 1  MPSPFSTLNTLSILFRRGYATAP-EGVAARLGGIMKKKEESLRIGREKKAVSWVPDPVTG 60

Query: 63 YYRPENCGAEMDAADLRAMLLNPATK 86
          YYRPENCGAEMDAADLRAMLLN ATK
Sbjct: 61 YYRPENCGAEMDAADLRAMLLNSATK 85

[Close]

BLAST of MELO3C017950 vs. TrEMBL
Match: A0A061DQX0_THECC (Indole-3-acetic acid-induced protein ARG2, putative OS=Theobroma cacao GN=TCM_004676 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.1e-11
Identity = 40/73 (54.79%), Postives = 51/73 (69.86%), Query Frame = 1


Query: 11 STLFRRGYATAS---AEGVAARISSIMKKKEESLRIGREKMAVSWVPDPVTGYYRPENCG 70
          + + RRGYA AS     G AAR ++++KK  E +   +EK  VSWVPDPVTG+YRPEN  
Sbjct: 21 NAISRRGYAAASQGVVSGGAARNAAVVKKTGEEMAGAKEK--VSWVPDPVTGFYRPENTA 80

Query: 71 AEMDAADLRAMLL 81
           E+D A+LRAMLL
Sbjct: 81 KEIDVAELRAMLL 91

[Close]

BLAST of MELO3C017950 vs. TrEMBL
Match: D7M417_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_327563 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 8.8e-10
Identity = 40/77 (51.95%), Postives = 50/77 (64.94%), Query Frame = 1


Query: 11  STLFRRGYATASAEGVAAR----ISSIMKKK--EESLRIGREKMAVSWVPDPVTGYYRPE 70
           + +FRRGYA  +A+G   R     S++MKKK  EES +       +SWVPDP TGYYRPE
Sbjct: 107 NAIFRRGYAATAAQGSGGRSGAAASAVMKKKGVEESTQ------KISWVPDPKTGYYRPE 166

Query: 71  NCGAEMDAADLRAMLLN 82
               E+DAA+LRA LLN
Sbjct: 167 TGSNEIDAAELRAALLN 177

[Close]

BLAST of MELO3C017950 vs. TrEMBL
Match: O65149_TOBAC (Late embryogenis abundant protein 5 OS=Nicotiana tabacum GN=lea5 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-09
Identity = 40/76 (52.63%), Postives = 49/76 (64.47%), Query Frame = 1


Query: 11 STLFRRGYATASAEGV-----AARISSIMKKKEESLRIGREKMAVSWVPDPVTGYYRPEN 70
          S + RRGYA AS+  V      + ++ +MKK EES      K   SWVPDPVTGYYRPE+
Sbjct: 21 SFVSRRGYAAASSASVPGGVRGSGVNIMMKKWEES-----SKKTTSWVPDPVTGYYRPES 80

Query: 71 CGAEMDAADLRAMLLN 82
             E+DAA+LR MLLN
Sbjct: 81 HAKEIDAAELRQMLLN 91

[Close]

BLAST of MELO3C017950 vs. TrEMBL
Match: A0A059AXH0_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_H01105 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.6e-09
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1


Query: 11  STLFRRGYATASAEGVAARISSIMKKKEESLRIGREKMAVSWVPDPVTGYYRPENCGAEM 70
           +++ RRGYA AS +GVA+  + + KK  E +    E+  VSWVPDP TGYYRPEN   E+
Sbjct: 34  ASIARRGYAAAS-QGVASSFNVMSKKTGEEMARSTER--VSWVPDPKTGYYRPENRADEI 93

Query: 71  DAADLRAMLL 81
           D A+LRA+LL
Sbjct: 94  DVAELRALLL 100

[Close]

BLAST of MELO3C017950 vs. TAIR10
Match: AT4G02380.1 (AT4G02380.1 senescence-associated gene 21)

HSP 1 Score: 68.2 bits (165), Expect = 2.9e-12
Identity = 40/80 (50.00%), Postives = 48/80 (60.00%), Query Frame = 1


Query: 11 STLFRRGYATASAEGVA-------ARISSIMKKK--EESLRIGREKMAVSWVPDPVTGYY 70
          + +FRRGYA  +A+G         A  S++MKKK  EES +       +SWVPDP TGYY
Sbjct: 21 NAIFRRGYAATAAQGSVSSGGRSGAVASAVMKKKGVEESTQ------KISWVPDPKTGYY 80

Query: 71 RPENCGAEMDAADLRAMLLN 82
          RPE    E+DAA+LRA LLN
Sbjct: 81 RPETGSNEIDAAELRAALLN 94

[Close]

BLAST of MELO3C017950 vs. TAIR10
Match: AT1G02820.1 (AT1G02820.1 Late embryogenesis abundant 3 (LEA3) family protein)

HSP 1 Score: 60.5 bits (145), Expect = 6.0e-10
Identity = 32/71 (45.07%), Postives = 40/71 (56.34%), Query Frame = 1


Query: 11 STLFRRGYATASAEGVAARISSIMKKKEESLRIGREKMAVSWVPDPVTGYYRPENCGAEM 70
          + +FRRG+A A+   +   +S+   KK        EK    WVPDP TGYYRPE    E+
Sbjct: 21 NAVFRRGFAAAAKTALDGSVSTAEMKKRAG-EASSEK--APWVPDPKTGYYRPETVSEEI 80

Query: 71 DAADLRAMLLN 82
          D A+LRA+LLN
Sbjct: 81 DPAELRAILLN 88

[Close]

BLAST of MELO3C017950 vs. TAIR10
Match: AT4G15910.1 (AT4G15910.1 drought-induced 21)

HSP 1 Score: 55.5 bits (132), Expect = 1.9e-08
Identity = 33/80 (41.25%), Postives = 41/80 (51.25%), Query Frame = 1


Query: 11  STLFRRGYATASAEGVAARISS-----IMKKKEESLRIGREKMAVSWVPDPVTGYYRPEN 70
           S + RR Y   S    AA +S      +M  K E   + +E  + +W PDPVTGYYRP N
Sbjct: 24  SIVLRRSYVATSQNVTAAGLSKGGSTRVMVGKMEQRGLDQEAES-AWGPDPVTGYYRPSN 83

Query: 71  CGAEMDAADLRAMLLNPATK 86
             AE+D A+LR +LL    K
Sbjct: 84  RAAEIDPAELRELLLKNKAK 102

[Close]

BLAST of MELO3C017950 vs. NCBI nr
Match: gi|659108675|ref|XP_008454329.1| (PREDICTED: late embryogenesis abundant protein Lea5-A-like [Cucumis melo])

HSP 1 Score: 170.6 bits (431), Expect = 1.2e-39
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1


Query: 1  MPLPSSFSTLSTLFRRGYATASAEGVAARISSIMKKKEESLRIGREKMAVSWVPDPVTGY 60
          MPLPSSFSTLSTLFRRGYATASAEGVAARISSIMKKKEESLRIGREKMAVSWVPDPVTGY
Sbjct: 1  MPLPSSFSTLSTLFRRGYATASAEGVAARISSIMKKKEESLRIGREKMAVSWVPDPVTGY 60

Query: 61 YRPENCGAEMDAADLRAMLLNPATK 86
          YRPENCGAEMDAADLRAMLLNPATK
Sbjct: 61 YRPENCGAEMDAADLRAMLLNPATK 85

[Close]

BLAST of MELO3C017950 vs. NCBI nr
Match: gi|778689326|ref|XP_011652940.1| (PREDICTED: late embryogenesis abundant protein Lea5-A-like [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 2.9e-30
Identity = 73/86 (84.88%), Postives = 76/86 (88.37%), Query Frame = 1


Query: 3  LPSSFSTLSTL---FRRGYATASAEGVAARISSIMKKKEESLRIGREKMAVSWVPDPVTG 62
          +PS FSTL+TL   FRRGYATA  EGVAAR+  IMKKKEESLRIGREK AVSWVPDPVTG
Sbjct: 1  MPSPFSTLNTLSILFRRGYATAP-EGVAARLGGIMKKKEESLRIGREKKAVSWVPDPVTG 60

Query: 63 YYRPENCGAEMDAADLRAMLLNPATK 86
          YYRPENCGAEMDAADLRAMLLN ATK
Sbjct: 61 YYRPENCGAEMDAADLRAMLLNSATK 85

[Close]

BLAST of MELO3C017950 vs. NCBI nr
Match: gi|590719079|ref|XP_007050958.1| (Indole-3-acetic acid-induced protein ARG2, putative [Theobroma cacao])

HSP 1 Score: 74.7 bits (182), Expect = 8.7e-11
Identity = 40/73 (54.79%), Postives = 51/73 (69.86%), Query Frame = 1


Query: 11 STLFRRGYATAS---AEGVAARISSIMKKKEESLRIGREKMAVSWVPDPVTGYYRPENCG 70
          + + RRGYA AS     G AAR ++++KK  E +   +EK  VSWVPDPVTG+YRPEN  
Sbjct: 21 NAISRRGYAAASQGVVSGGAARNAAVVKKTGEEMAGAKEK--VSWVPDPVTGFYRPENTA 80

Query: 71 AEMDAADLRAMLL 81
           E+D A+LRAMLL
Sbjct: 81 KEIDVAELRAMLL 91

[Close]

BLAST of MELO3C017950 vs. NCBI nr
Match: gi|297809919|ref|XP_002872843.1| (hypothetical protein ARALYDRAFT_327563 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-09
Identity = 40/77 (51.95%), Postives = 50/77 (64.94%), Query Frame = 1


Query: 11  STLFRRGYATASAEGVAAR----ISSIMKKK--EESLRIGREKMAVSWVPDPVTGYYRPE 70
           + +FRRGYA  +A+G   R     S++MKKK  EES +       +SWVPDP TGYYRPE
Sbjct: 107 NAIFRRGYAATAAQGSGGRSGAAASAVMKKKGVEESTQ------KISWVPDPKTGYYRPE 166

Query: 71  NCGAEMDAADLRAMLLN 82
               E+DAA+LRA LLN
Sbjct: 167 TGSNEIDAAELRAALLN 177

[Close]

BLAST of MELO3C017950 vs. NCBI nr
Match: gi|2981167|gb|AAC06242.1| (late embryogenis abundant protein 5 [Nicotiana tabacum])

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-09
Identity = 40/76 (52.63%), Postives = 49/76 (64.47%), Query Frame = 1


Query: 11 STLFRRGYATASAEGV-----AARISSIMKKKEESLRIGREKMAVSWVPDPVTGYYRPEN 70
          S + RRGYA AS+  V      + ++ +MKK EES      K   SWVPDPVTGYYRPE+
Sbjct: 21 SFVSRRGYAAASSASVPGGVRGSGVNIMMKKWEES-----SKKTTSWVPDPVTGYYRPES 80

Query: 71 CGAEMDAADLRAMLLN 82
             E+DAA+LR MLLN
Sbjct: 81 HAKEIDAAELRQMLLN 91

The following BLAST results are available for this feature:

BLAST of MELO3C017950 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SAG21_ARATH	5.1e-11	50.00	Protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial OS=Arabidopsis thaliana GN=...	[more]
LEA5A_GOSHI	8.7e-11	48.72	Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 ...	[more]
LEA5D_GOSHI	1.5e-10	48.72	Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 ...	[more]
LEA5_CITSI	7.4e-10	47.89	Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1	[more]
ARG2_VIGRR	5.3e-08	45.45	Indole-3-acetic acid-induced protein ARG2 OS=Vigna radiata var. radiata GN=ARG2 ...	[more]

BLAST of MELO3C017950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTB8_CUCSA	2.0e-30	84.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001850 PE=4 SV=1	[more]
A0A061DQX0_THECC	6.1e-11	54.79	Indole-3-acetic acid-induced protein ARG2, putative OS=Theobroma cacao GN=TCM_00...	[more]
D7M417_ARALL	8.8e-10	51.95	Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA...	[more]
O65149_TOBAC	1.1e-09	52.63	Late embryogenis abundant protein 5 OS=Nicotiana tabacum GN=lea5 PE=2 SV=1	[more]
A0A059AXH0_EUCGR	2.6e-09	52.86	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_H01105 PE=4 ...	[more]

BLAST of MELO3C017950 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G02380.1	2.9e-12	50.00	senescence-associated gene 21	[more]
AT1G02820.1	6.0e-10	45.07	Late embryogenesis abundant 3 (LEA3) family protein	[more]
AT4G15910.1	1.9e-08	41.25	drought-induced 21	[more]

BLAST of MELO3C017950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659108675\|ref\|XP_008454329.1\|	1.2e-39	100.00	PREDICTED: late embryogenesis abundant protein Lea5-A-like [Cucumis melo]	[more]
gi\|778689326\|ref\|XP_011652940.1\|	2.9e-30	84.88	PREDICTED: late embryogenesis abundant protein Lea5-A-like [Cucumis sativus]	[more]
gi\|590719079\|ref\|XP_007050958.1\|	8.7e-11	54.79	Indole-3-acetic acid-induced protein ARG2, putative [Theobroma cacao]	[more]
gi\|297809919\|ref\|XP_002872843.1\|	1.3e-09	51.95	hypothetical protein ARALYDRAFT_327563 [Arabidopsis lyrata subsp. lyrata]	[more]
gi\|2981167\|gb\|AAC06242.1\|	1.6e-09	52.63	late embryogenis abundant protein 5 [Nicotiana tabacum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004926	LEA_3

Vocabulary: **Biological Process**
Term	Definition
GO:0006950	response to stress

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071310	cellular response to organic substance
biological_process	GO:0006952	defense response
biological_process	GO:0007165	signal transduction
biological_process	GO:0006950	response to stress
biological_process	GO:0001101	response to acid chemical
biological_process	GO:0009409	response to cold
biological_process	GO:1901700	response to oxygen-containing compound
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU45031	melon EST collection version 4.0	transcribed_cluster
MU50409	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C017950T1	MELO3C017950T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU50409	MU50409	transcribed_cluster
MU45031	MU45031	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004926	Late embryogenesis abundant protein, LEA5-type	PFAM	PF03242	LEA_3	coord: 11..80 score: 7.4
None	No IPR available	PANTHER	PTHR33509	FAMILY NOT NAMED	coord: 12..81 score: 6.1
None	No IPR available	PANTHER	PTHR33509:SF5	LATE EMBRYOGENESIS ABUNDANT 3 (LEA3) FAMILY PROTEIN	coord: 12..81 score: 6.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C017950	Cla017401	Watermelon (97103) v1	mewmB497
MELO3C017950	ClCG10G011020	Watermelon (Charleston Gray)	mewcgB453
MELO3C017950	Cla97C10G193930	Watermelon (97103) v2	mewmbB463
MELO3C017950	Bhi11G001014	Wax gourd	mewgoB564
MELO3C017950	CSPI04G00910	Wild cucumber (PI 183967)	cpimeB310
MELO3C017950	Cucsa.097040	Cucumber (Gy14) v1	cgymeB111
MELO3C017950	Lsi03G010810	Bottle gourd (USVL1VR-Ls)	lsimeB269
MELO3C017950	CsGy4G000790	Cucumber (Gy14) v2	cgybmeB269

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C017950	Cucurbita maxima (Rimu)	cmameB245
MELO3C017950	Cucurbita maxima (Rimu)	cmameB347
MELO3C017950	Cucurbita maxima (Rimu)	cmameB434
MELO3C017950	Cucurbita maxima (Rimu)	cmameB854
MELO3C017950	Cucurbita moschata (Rifu)	cmomeB233
MELO3C017950	Cucurbita moschata (Rifu)	cmomeB339
MELO3C017950	Cucurbita moschata (Rifu)	cmomeB425
MELO3C017950	Cucurbita moschata (Rifu)	cmomeB836
MELO3C017950	Wild cucumber (PI 183967)	cpimeB572
MELO3C017950	Cucumber (Chinese Long) v2	cumeB312
MELO3C017950	Cucurbita pepo (Zucchini)	cpemeB540
MELO3C017950	Cucurbita pepo (Zucchini)	cpemeB146
MELO3C017950	Cucurbita pepo (Zucchini)	cpemeB318
MELO3C017950	Cucurbita pepo (Zucchini)	cpemeB589
MELO3C017950	Bottle gourd (USVL1VR-Ls)	lsimeB226
MELO3C017950	Cucumber (Gy14) v2	cgybmeB501
MELO3C017950	Silver-seed gourd	carmeB0116
MELO3C017950	Silver-seed gourd	carmeB0758
MELO3C017950	Silver-seed gourd	carmeB0813
MELO3C017950	Cucumber (Chinese Long) v3	cucmeB315
MELO3C017950	Cucumber (Chinese Long) v3	cucmeB584
MELO3C017950	Cucumber (Gy14) v1	cgymeB372