MELO3C017932 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C017932
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Cellulose synthase-like protein D5
Location	chr7 : 25976722 .. 25977218 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAAAGACCGGGCCGTTGAAGACAATGCAAATATGGGAAAGCTGCAGATTTCTAATACTATTTTCACTGGAGGTTTCAATACGGTGACTCGAATGCACGTAATCAAATTGGATATTGAACAGAGTTACACAGATGTTAGTGATGATGAAGCGAAGGACCAAGCTTTGTCACTGCTTTCAGTGGCGGATGATTCTGAGACCAAGGACAGTGTTGGGTTTGGCTCAGAGGTGAAGAATGATTTTCAGCACCAGCCTAACTTTGGGGAGAAAACCCGGCGACCTTTAACCCGGAAATTCTCTGTTTCTCCTACCATTCTAATCCCATACAGGTCAAAATAATAATAAATAAGAAAAAAACGTTGTTCCTCTATCTTTGAACTTTTGAAATTTGATTCGTTGTGTTCGGTTTCTAAAGGCTTTCTGTATCTCTTTGGCAGATTGCTTTCAATAATTCGTATACTGCTACTTGGTTTCTATCTAACATGGAGACTTAG

mRNA sequence

ATGTCGAAAGACCGGGCCGTTGAAGACAATGCAAATATGGGAAAGCTGCAGATTTCTAATACTATTTTCACTGGAGGTTTCAATACGGTGACTCGAATGCACGTAATCAAATTGGATATTGAACAGAGTTACACAGATGTTAGTGATGATGAAGCGAAGGACCAAGCTTTGTCACTGCTTTCAGTGGCGGATGATTCTGAGACCAAGGACAGTGTTGGGTTTGGCTCAGAGGTGAAGAATGATTTTCAGCACCAGCCTAACTTTGGGGAGAAAACCCGGCGACCTTTAACCCGGAAATTCTCTGTTTCTCCTACCATTCTAATCCCATACAGGCTTTCTGTATCTCTTTGGCAGATTGCTTTCAATAATTCGTATACTGCTACTTGGTTTCTATCTAACATGGAGACTTAG

Coding sequence (CDS)

ATGTCGAAAGACCGGGCCGTTGAAGACAATGCAAATATGGGAAAGCTGCAGATTTCTAATACTATTTTCACTGGAGGTTTCAATACGGTGACTCGAATGCACGTAATCAAATTGGATATTGAACAGAGTTACACAGATGTTAGTGATGATGAAGCGAAGGACCAAGCTTTGTCACTGCTTTCAGTGGCGGATGATTCTGAGACCAAGGACAGTGTTGGGTTTGGCTCAGAGGTGAAGAATGATTTTCAGCACCAGCCTAACTTTGGGGAGAAAACCCGGCGACCTTTAACCCGGAAATTCTCTGTTTCTCCTACCATTCTAATCCCATACAGGCTTTCTGTATCTCTTTGGCAGATTGCTTTCAATAATTCGTATACTGCTACTTGGTTTCTATCTAACATGGAGACTTAG

Protein sequence

MSKDRAVEDNANMGKLQISNTIFTGGFNTVTRMHVIKLDIEQSYTDVSDDEAKDQALSLLSVADDSETKDSVGFGSEVKNDFQHQPNFGEKTRRPLTRKFSVSPTILIPYRLSVSLWQIAFNNSYTATWFLSNMET*

Homology

[Close]

BLAST of MELO3C017932 vs. TrEMBL
Match: A0A0A0KT82_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G002520 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 6.2e-42
Identity = 96/123 (78.05%), Postives = 102/123 (82.93%), Query Frame = 1


Query: 1   MSKDRAVEDNANMGKLQISNTIFTGGFNTVTRMHVIKL----------DIEQSYTDVSDD 60
           MSKD+AVED+ANMGKLQISN IFTGGFNTVTRMH+IKL          D EQSYT VSDD
Sbjct: 1   MSKDQAVEDSANMGKLQISNAIFTGGFNTVTRMHLIKLDTNNGGGLCSDCEQSYTHVSDD 60

Query: 61  EAKDQALSLLSVADDSETKDSVGFGSEVK-NDFQHQPNFGEKTRRPLTRKFSVSPTILIP 113
           EA+DQALSLLS+ADD ETKDS GFGSEVK ND +HQPNFGEKTRR LT K  VSPTILIP
Sbjct: 61  EAEDQALSLLSMADDFETKDSNGFGSEVKNNDVKHQPNFGEKTRRSLTSKLPVSPTILIP 120

[Close]

BLAST of MELO3C017932 vs. TrEMBL
Match: A0A0A0KV93_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G002510 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.2e-30
Identity = 85/140 (60.71%), Postives = 95/140 (67.86%), Query Frame = 1


Query: 1   MSKDRAVEDNANMGKLQISNTIFTGGFNTVTRMHVIKLD----------IEQSYTDVSDD 60
           MSKD+AVEDNA M KLQISN IFTGGFNTVTRMH+IKLD           E SYT VSDD
Sbjct: 1   MSKDQAVEDNAYMEKLQISNAIFTGGFNTVTRMHLIKLDTNNGGGLCTGCELSYTHVSDD 60

Query: 61  EAKDQALSLLSVADDSETKDSVGFGSEVKNDFQHQPNFGEKTRRPLTRKFSVSPTILIPY 120
           EA++Q LSLLS+ADD ETKD+  FGSEVK           KTRRPL  K SVSPTILI Y
Sbjct: 61  EAENQDLSLLSMADDFETKDTAEFGSEVK-----------KTRRPLAWKLSVSPTILISY 120

Query: 121 RL--SVSLWQIAFNNSYTAT 129
           RL   + L  + F  ++T T
Sbjct: 121 RLLTIIRLLLLGFYLTWTLT 129

[Close]

BLAST of MELO3C017932 vs. TrEMBL
Match: A0A0A0KTD5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G002500 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.7e-10
Identity = 49/127 (38.58%), Postives = 62/127 (48.82%), Query Frame = 1


Query: 41  EQSYTDVSDDEAKDQALSLLSVADD---------------------------SETKDSVG 100
           ++ YT VSDDEA+DQAL L S+AD                             ETK + G
Sbjct: 200 KEGYTSVSDDEAEDQALPLPSMADAKLDKRLSLVKSFKAQNHPPDFDHARWLFETKGTYG 259

Query: 101 FGSEV-----------KNDFQHQPNFGEKTRRPLTRKFSVSPTILIPYRLSVSLWQIAFN 130
           +G+ V            N F H P+FGEK+RRPLTRK SVS  IL PYRL + +  +A  
Sbjct: 260 YGNAVWPKDGYGFGSGANGFDHPPDFGEKSRRPLTRKVSVSAAILSPYRLLIIIRLVAL- 319

[Close]

BLAST of MELO3C017932 vs. TrEMBL
Match: A0A0A0KTD5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G002500 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 9.7e-03
Identity = 25/33 (75.76%), Postives = 27/33 (81.82%), Query Frame = 1


Query: 8   EDNANMGKLQ---ISNTIFTGGFNTVTRMHVIK 38
           EDNANMGK Q   IS TIFTGGFN+VTR HVI+
Sbjct: 110 EDNANMGKSQRSFISGTIFTGGFNSVTRGHVIE 142

HSP 2 Score: 64.7 bits (156), Expect = 1.0e-07
Identity = 35/61 (57.38%), Postives = 41/61 (67.21%), Query Frame = 1


Query: 69  KDSVGFGSEVKNDFQHQPNFGEKTRRPLTRKFSVSPTILIPYRLSVSLWQIAFNNSYTAT 128
           KD  GFGS V N F+H P+FGEKTRRPLTRK +VS  I+ PYRL V L  +A    +  T
Sbjct: 272 KDGYGFGSGV-NGFEHPPDFGEKTRRPLTRKVNVSAAIISPYRLLVLLRLVAL--GFFLT 329

Query: 129 W 130
           W
Sbjct: 332 W 329

[Close]

BLAST of MELO3C017932 vs. TrEMBL
Match: F6HZ78_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g01030 PE=4 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 1.4e-01
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 1


Query: 8   EDNANMGKLQ---ISNTIFTGGFNTVTRMHVIKLDIEQSYT 46
           ED+ N+GK +   IS TIFTGGFN+VTR HV++  +E+  T
Sbjct: 102 EDDKNLGKPERSFISGTIFTGGFNSVTRGHVLECSMERKET 142

HSP 2 Score: 64.7 bits (156), Expect = 1.0e-07
Identity = 35/61 (57.38%), Postives = 41/61 (67.21%), Query Frame = 1


Query: 69  KDSVGFGSEVKNDFQHQPNFGEKTRRPLTRKFSVSPTILIPYRLSVSLWQIAFNNSYTAT 128
           KD  GFGS V N F+H P+FGEKTRRPLTRK +VS  I+ PYRL V L  +A    +  T
Sbjct: 105 KDGYGFGSGV-NGFEHPPDFGEKTRRPLTRKVNVSAAIISPYRLLVLLRLVAL--GFFLT 162

Query: 129 W 130
           W
Sbjct: 165 W 162

[Close]

BLAST of MELO3C017932 vs. TAIR10
Match: AT1G02730.1 (AT1G02730.1 cellulose synthase-like D5)

HSP 1 Score: 50.4 bits (119), Expect = 9.9e-07
Identity = 26/53 (49.06%), Postives = 33/53 (62.26%), Query Frame = 1


Query: 69  KDSVGFGSEVK-NDFQHQPNFGEKTRRPLTRKFSVSPTILIPYRLSVSLWQIA 121
           KD  G GS    N ++  P FGE+++RPLTRK SVS  I+ PYRL ++L  +A
Sbjct: 275 KDGYGIGSGGGGNGYETPPEFGERSKRPLTRKVSVSAAIISPYRLLIALRLVA 327

HSP 2 Score: 37.7 bits (86), Expect = 6.6e-03
Identity = 24/63 (38.10%), Postives = 32/63 (50.79%), Query Frame = 1


Query: 3   KDRAVEDNANMGKLQISNTIFTGGFNTVTRMHVIKLDIEQSYTDVSDDEAKDQALSLLSV 62
           +D  ++ N+N  K  +S TIFTGGF +VTR HVI   +     D +D E K   +  L  
Sbjct: 113 EDEMLKGNSNQ-KSFLSGTIFTGGFKSVTRGHVIDCSM-----DRADPEKKSGQICWLKG 169

Query: 63  ADD 66
            D+
Sbjct: 173 CDE 169

[Close]

BLAST of MELO3C017932 vs. NCBI nr
Match: gi|659108999|ref|XP_008454495.1| (PREDICTED: cellulose synthase-like protein D5 [Cucumis melo])

HSP 1 Score: 224.6 bits (571), Expect = 1.1e-55
Identity = 118/131 (90.08%), Postives = 121/131 (92.37%), Query Frame = 1


Query: 1   MSKDRAVEDNANMGKLQISNTIFTGGFNTVTRMHVIKLDIEQSYTDVSDDEAKDQALSLL 60
           MSKDRAVEDNANMGKLQISNTIFTGGFNTVTRMHVIKLDIEQSYTDVSDDEAKDQALSLL
Sbjct: 1   MSKDRAVEDNANMGKLQISNTIFTGGFNTVTRMHVIKLDIEQSYTDVSDDEAKDQALSLL 60

Query: 61  SVADDSETKDSVGFGSEVKNDFQHQPNFGEKTRRPLTRKFSVSPTILIPYRLSVSLWQIA 120
           SVADDSETKDSVGFGSEVKNDFQHQPNFGEKTRRPLTRKFSVSPTILIPYRL +S+ +I 
Sbjct: 61  SVADDSETKDSVGFGSEVKNDFQHQPNFGEKTRRPLTRKFSVSPTILIPYRL-LSIIRIL 120

Query: 121 FNNSYTATWFL 132
               Y  TW L
Sbjct: 121 LLGFY-LTWRL 129

[Close]

BLAST of MELO3C017932 vs. NCBI nr
Match: gi|778689372|ref|XP_011652947.1| (PREDICTED: cellulose synthase-like protein D5 [Cucumis sativus])

HSP 1 Score: 178.3 bits (451), Expect = 8.9e-42
Identity = 96/123 (78.05%), Postives = 102/123 (82.93%), Query Frame = 1


Query: 1   MSKDRAVEDNANMGKLQISNTIFTGGFNTVTRMHVIKL----------DIEQSYTDVSDD 60
           MSKD+AVED+ANMGKLQISN IFTGGFNTVTRMH+IKL          D EQSYT VSDD
Sbjct: 1   MSKDQAVEDSANMGKLQISNAIFTGGFNTVTRMHLIKLDTNNGGGLCSDCEQSYTHVSDD 60

Query: 61  EAKDQALSLLSVADDSETKDSVGFGSEVK-NDFQHQPNFGEKTRRPLTRKFSVSPTILIP 113
           EA+DQALSLLS+ADD ETKDS GFGSEVK ND +HQPNFGEKTRR LT K  VSPTILIP
Sbjct: 61  EAEDQALSLLSMADDFETKDSNGFGSEVKNNDVKHQPNFGEKTRRSLTSKLPVSPTILIP 120

[Close]

BLAST of MELO3C017932 vs. NCBI nr
Match: gi|778689369|ref|XP_011652946.1| (PREDICTED: cellulose synthase-like protein D5 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 6.0e-30
Identity = 85/140 (60.71%), Postives = 95/140 (67.86%), Query Frame = 1


Query: 1   MSKDRAVEDNANMGKLQISNTIFTGGFNTVTRMHVIKLD----------IEQSYTDVSDD 60
           MSKD+AVEDNA M KLQISN IFTGGFNTVTRMH+IKLD           E SYT VSDD
Sbjct: 1   MSKDQAVEDNAYMEKLQISNAIFTGGFNTVTRMHLIKLDTNNGGGLCTGCELSYTHVSDD 60

Query: 61  EAKDQALSLLSVADDSETKDSVGFGSEVKNDFQHQPNFGEKTRRPLTRKFSVSPTILIPY 120
           EA++Q LSLLS+ADD ETKD+  FGSEVK           KTRRPL  K SVSPTILI Y
Sbjct: 61  EAENQDLSLLSMADDFETKDTAEFGSEVK-----------KTRRPLAWKLSVSPTILISY 120

Query: 121 RL--SVSLWQIAFNNSYTAT 129
           RL   + L  + F  ++T T
Sbjct: 121 RLLTIIRLLLLGFYLTWTLT 129

[Close]

BLAST of MELO3C017932 vs. NCBI nr
Match: gi|659108641|ref|XP_008454309.1| (PREDICTED: cellulose synthase-like protein D5 [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-10
Identity = 50/127 (39.37%), Postives = 63/127 (49.61%), Query Frame = 1


Query: 41  EQSYTDVSDDEAKDQALSLLSVADDS---------------------------ETKDSVG 100
           ++SYT VSDDEA+DQAL L S+AD                             ETK + G
Sbjct: 200 KESYTSVSDDEAEDQALPLPSMADAKLDKRLSLVKSFKAQSHPPDFDHARWLFETKGTYG 259

Query: 101 FGSEV-----------KNDFQHQPNFGEKTRRPLTRKFSVSPTILIPYRLSVSLWQIAFN 130
           +G+ V            N F H P+FGEK+RRPLTRK SVS  IL PYRL + +  +A  
Sbjct: 260 YGNAVWPKDGYGFGSGANGFDHPPDFGEKSRRPLTRKVSVSAAILSPYRLLIIIRLVAL- 319

[Close]

BLAST of MELO3C017932 vs. NCBI nr
Match: gi|659108641|ref|XP_008454309.1| (PREDICTED: cellulose synthase-like protein D5 [Cucumis melo])

HSP 1 Score: 47.8 bits (112), Expect = 1.8e-02
Identity = 25/33 (75.76%), Postives = 27/33 (81.82%), Query Frame = 1


Query: 8   EDNANMGKLQ---ISNTIFTGGFNTVTRMHVIK 38
           EDNANMGK Q   IS TIFTGGFN+VTR HVI+
Sbjct: 110 EDNANMGKPQRSFISGTIFTGGFNSVTRGHVIE 142

HSP 2 Score: 72.8 bits (177), Expect = 5.3e-10
Identity = 49/127 (38.58%), Postives = 62/127 (48.82%), Query Frame = 1


Query: 41  EQSYTDVSDDEAKDQALSLLSVADD---------------------------SETKDSVG 100
           ++ YT VSDDEA+DQAL L S+AD                             ETK + G
Sbjct: 200 KEGYTSVSDDEAEDQALPLPSMADAKLDKRLSLVKSFKAQNHPPDFDHARWLFETKGTYG 259

Query: 101 FGSEV-----------KNDFQHQPNFGEKTRRPLTRKFSVSPTILIPYRLSVSLWQIAFN 130
           +G+ V            N F H P+FGEK+RRPLTRK SVS  IL PYRL + +  +A  
Sbjct: 260 YGNAVWPKDGYGFGSGANGFDHPPDFGEKSRRPLTRKVSVSAAILSPYRLLIIIRLVAL- 319

The following BLAST results are available for this feature:

BLAST of MELO3C017932 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT82_CUCSA	6.2e-42	78.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G002520 PE=4 SV=1	[more]
A0A0A0KV93_CUCSA	4.2e-30	60.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G002510 PE=4 SV=1	[more]
A0A0A0KTD5_CUCSA	3.7e-10	38.58	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G002500 PE=3 SV=1	[more]
A0A0A0KTD5_CUCSA	9.7e-03	75.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G002500 PE=3 SV=1	[more]
F6HZ78_VITVI	1.4e-01	53.66	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g01030 PE=4 SV=...	[more]

BLAST of MELO3C017932 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G02730.1	9.9e-07	49.06	cellulose synthase-like D5	[more]

BLAST of MELO3C017932 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659108999\|ref\|XP_008454495.1\|	1.1e-55	90.08	PREDICTED: cellulose synthase-like protein D5 [Cucumis melo]	[more]
gi\|778689372\|ref\|XP_011652947.1\|	8.9e-42	78.05	PREDICTED: cellulose synthase-like protein D5 [Cucumis sativus]	[more]
gi\|778689369\|ref\|XP_011652946.1\|	6.0e-30	60.71	PREDICTED: cellulose synthase-like protein D5 [Cucumis sativus]	[more]
gi\|659108641\|ref\|XP_008454309.1\|	1.1e-10	39.37	PREDICTED: cellulose synthase-like protein D5 [Cucumis melo]	[more]
gi\|659108641\|ref\|XP_008454309.1\|	1.8e-02	75.76	PREDICTED: cellulose synthase-like protein D5 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071840	cellular component organization or biogenesis
biological_process	GO:0030244	cellulose biosynthetic process
biological_process	GO:0042221	response to chemical
biological_process	GO:0006970	response to osmotic stress
biological_process	GO:0048367	shoot system development
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0006011	UDP-glucose metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0016760	cellulose synthase (UDP-forming) activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C017932T1	MELO3C017932T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C017932	Silver-seed gourd	carmeB0116
MELO3C017932	Silver-seed gourd	carmeB0758
MELO3C017932	Silver-seed gourd	carmeB0813
MELO3C017932	Cucumber (Chinese Long) v3	cucmeB315
MELO3C017932	Cucumber (Chinese Long) v3	cucmeB584
MELO3C017932	Watermelon (97103) v2	mewmbB463
MELO3C017932	Watermelon (97103) v2	mewmbB509
MELO3C017932	Wax gourd	mewgoB564
MELO3C017932	Melon (DHL92) v3.5.1	memeB096
MELO3C017932	Cucumber (Gy14) v1	cgymeB111
MELO3C017932	Cucumber (Gy14) v1	cgymeB372
MELO3C017932	Cucurbita maxima (Rimu)	cmameB245
MELO3C017932	Cucurbita maxima (Rimu)	cmameB347
MELO3C017932	Cucurbita maxima (Rimu)	cmameB434
MELO3C017932	Cucurbita maxima (Rimu)	cmameB854
MELO3C017932	Cucurbita moschata (Rifu)	cmomeB233
MELO3C017932	Cucurbita moschata (Rifu)	cmomeB339
MELO3C017932	Cucurbita moschata (Rifu)	cmomeB425
MELO3C017932	Cucurbita moschata (Rifu)	cmomeB836
MELO3C017932	Wild cucumber (PI 183967)	cpimeB310
MELO3C017932	Wild cucumber (PI 183967)	cpimeB572
MELO3C017932	Cucumber (Chinese Long) v2	cumeB312
MELO3C017932	Cucumber (Chinese Long) v2	cumeB561
MELO3C017932	Watermelon (Charleston Gray)	mewcgB446
MELO3C017932	Watermelon (Charleston Gray)	mewcgB453
MELO3C017932	Watermelon (97103) v1	mewmB490
MELO3C017932	Watermelon (97103) v1	mewmB497
MELO3C017932	Cucurbita pepo (Zucchini)	cpemeB540
MELO3C017932	Cucurbita pepo (Zucchini)	cpemeB146
MELO3C017932	Cucurbita pepo (Zucchini)	cpemeB318
MELO3C017932	Cucurbita pepo (Zucchini)	cpemeB589
MELO3C017932	Bottle gourd (USVL1VR-Ls)	lsimeB226
MELO3C017932	Bottle gourd (USVL1VR-Ls)	lsimeB269
MELO3C017932	Cucumber (Gy14) v2	cgybmeB269
MELO3C017932	Cucumber (Gy14) v2	cgybmeB501