MELO3C017926 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C017926
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Chaperone protein DnaK
Location	chr7 : 25949111 .. 25949930 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCCTTCTTCAACAATGTCCATCAGTACTAAATTCTTTCATGTCCGCAAACCTTGGAAAATCCTACGCCGCACCTTTCCGGTGGATTTCCGCCCCCTGCGCCGTTTCATCAAGCGAATCGTTCACACAACTCCAACCCCTCTTCCCCATCATTATGCAGAGCGTCAATTCTCTTTCAACGACACCCCCATTTTCCACCGCCGTCCCCCGTCTGCCTCGGCGACGACCATGTTCCAAATCCCGCGGTTCTCCTGCATAAACCCCAAGGTTGAGTTTGAGAGATACGATGACTGTGAATGGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGATGGGATCGATTTGAAGGCGGAGAAGTTTATAAAAATGTTCTATGAGGAAATGAAAATGCAAAGTCAGGTCTCGTATTTGCGGTTCGATGAGTTTTCCGATGACGATGAGTAATGGAACCATGCGGATTTACTCAATTAATCACTTTGTACAAATATTTGTTTTAGGACATAATAATTGAGTTTAGAATGAGAAAAAAGTTACTTAAGTTAGTGTGTGATCGATTAAAACATTTAATGTAAATATTTGTTTTAATGAATAACAATAATCTATTAAGATATTTACAAACCTAATTAATTATAGAAATGATAGTATTAGATTACCATTAATATGAAATTATATTTTTATCAATTCCCCTATATTAAATGAAATTCATTGTTTAATTAATTAATCTACGAAAATTACGTAAGATGACGATACTTAATTTTATAAATTAAATGAACATCATTTTACTCATAAAATATTT

mRNA sequence

ATTCCTTCTTCAACAATGTCCATCAGTACTAAATTCTTTCATGTCCGCAAACCTTGGAAAATCCTACGCCGCACCTTTCCGGTGGATTTCCGCCCCCTGCGCCGTTTCATCAAGCGAATCGTTCACACAACTCCAACCCCTCTTCCCCATCATTATGCAGAGCGTCAATTCTCTTTCAACGACACCCCCATTTTCCACCGCCGTCCCCCGTCTGCCTCGGCGACGACCATGTTCCAAATCCCGCGGTTCTCCTGCATAAACCCCAAGGTTGAGTTTGAGAGATACGATGACTGTGAATGGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGATGGGATCGATTTGAAGGCGGAGAAGTTTATAAAAATGTTCTATGAGGAAATGAAAATGCAAAGTCAGGTCTCGTATTTGCGGTTCGATGAGTTTTCCGATGACGATGAGTAATGGAACCATGCGGATTTACTCAATTAATCACTTTGTACAAATATTTGTTTTAGGACATAATAATTGAGTTTAGAATGAGAAAAAAGTTACTTAAGTTAGTGTGTGATCGATTAAAACATTTAATGTAAATATTTGTTTTAATGAATAACAATAATCTATTAAGATATTTACAAACCTAATTAATTATAGAAATGATAGTATTAGATTACCATTAATATGAAATTATATTTTTATCAATTCCCCTATATTAAATGAAATTCATTGTTTAATTAATTAATCTACGAAAATTACGTAAGATGACGATACTTAATTTTATAAATTAAATGAACATCATTTTACTCATAAAATATTT

Coding sequence (CDS)

ATGTCCATCAGTACTAAATTCTTTCATGTCCGCAAACCTTGGAAAATCCTACGCCGCACCTTTCCGGTGGATTTCCGCCCCCTGCGCCGTTTCATCAAGCGAATCGTTCACACAACTCCAACCCCTCTTCCCCATCATTATGCAGAGCGTCAATTCTCTTTCAACGACACCCCCATTTTCCACCGCCGTCCCCCGTCTGCCTCGGCGACGACCATGTTCCAAATCCCGCGGTTCTCCTGCATAAACCCCAAGGTTGAGTTTGAGAGATACGATGACTGTGAATGGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGATGGGATCGATTTGAAGGCGGAGAAGTTTATAAAAATGTTCTATGAGGAAATGAAAATGCAAAGTCAGGTCTCGTATTTGCGGTTCGATGAGTTTTCCGATGACGATGAGTAA

Protein sequence

MSISTKFFHVRKPWKILRRTFPVDFRPLRRFIKRIVHTTPTPLPHHYAERQFSFNDTPIFHRRPPSASATTMFQIPRFSCINPKVEFERYDDCEWEEEEEEEEEEEEEEEEEEDGIDLKAEKFIKMFYEEMKMQSQVSYLRFDEFSDDDE*

Homology

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BLAST of MELO3C017926 vs. TrEMBL
Match: A0A0A0KYA9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G002580 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 4.4e-65
Identity = 129/164 (78.66%), Postives = 136/164 (82.93%), Query Frame = 1


Query: 1   MSISTKFFHVRKPWKIL---------RRTFPVDFRPLRRFIKRIVHTTPTPLPHHYAERQ 60
           MS +T+FFHVRK WKI+         RR FPVDFRPLRRFIKRI+H TPTPLP HYAERQ
Sbjct: 1   MSNNTRFFHVRKAWKIILRQWKLHSHRRAFPVDFRPLRRFIKRILHPTPTPLPPHYAERQ 60

Query: 61  FSFNDTPIFH-----RRPPSASATTMFQIPRFSCINPKVEFERYDDCEWEEEEEEEEEEE 120
           FSFNDTPIFH     RR PSASA  +F IPRFSCINPKVEFERY+DCEWE    EEEEEE
Sbjct: 61  FSFNDTPIFHLKFHSRRAPSASAA-LFLIPRFSCINPKVEFERYEDCEWERRNYEEEEEE 120

Query: 121 EEEEEEEDGIDLKAEKFIKMFYEEMKMQSQVSYLRFDEFSDDDE 151
           EEEEEEEDGIDLKAEKFIKMFYEEMKMQSQVSYLRFDEFSD +E
Sbjct: 121 EEEEEEEDGIDLKAEKFIKMFYEEMKMQSQVSYLRFDEFSDGEE 163

[Close]

BLAST of MELO3C017926 vs. TAIR10
Match: AT4G02170.1 (AT4G02170.1 unknown protein)

HSP 1 Score: 75.9 bits (185), Expect = 2.4e-14
Identity = 36/104 (34.62%), Postives = 63/104 (60.58%), Query Frame = 1


Query: 46  HYAERQFSFNDTPIFHRRPPSASATTMFQIPRFSCINPKVEFERYDDCEWEEEEEEEEEE 105
           +Y ERQ SF++TP+F+ +      T+  +     C  P V+F+   + + ++  +E +  
Sbjct: 64  YYGERQLSFDETPLFNVKKKMHCPTSSMRFLLLPCFAPPVDFDYDFEMDGQDYSDEVQSY 123

Query: 106 EEEEE--EEEDGIDLKAEKFIKMFYEEMKMQSQVSYLRFDEFSD 148
             +E   EEE G+D++AE+FI  FYE++K+Q QVSYL++ + +D
Sbjct: 124 GYDESCSEEEKGVDVRAEEFIAKFYEQIKLQRQVSYLKYKQHND 167

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BLAST of MELO3C017926 vs. NCBI nr
Match: gi|659108630|ref|XP_008454304.1| (PREDICTED: neuronal acetylcholine receptor subunit alpha-2-like [Cucumis melo])

HSP 1 Score: 317.0 bits (811), Expect = 1.8e-83
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1


Query: 1   MSISTKFFHVRKPWKILRRTFPVDFRPLRRFIKRIVHTTPTPLPHHYAERQFSFNDTPIF 60
           MSISTKFFHVRKPWKILRRTFPVDFRPLRRFIKRIVHTTPTPLPHHYAERQFSFNDTPIF
Sbjct: 1   MSISTKFFHVRKPWKILRRTFPVDFRPLRRFIKRIVHTTPTPLPHHYAERQFSFNDTPIF 60

Query: 61  HRRPPSASATTMFQIPRFSCINPKVEFERYDDCEWEEEEEEEEEEEEEEEEEEDGIDLKA 120
           HRRPPSASATTMFQIPRFSCINPKVEFERYDDCEWEEEEEEEEEEEEEEEEEEDGIDLKA
Sbjct: 61  HRRPPSASATTMFQIPRFSCINPKVEFERYDDCEWEEEEEEEEEEEEEEEEEEDGIDLKA 120

Query: 121 EKFIKMFYEEMKMQSQVSYLRFDEFSDDDE 151
           EKFIKMFYEEMKMQSQVSYLRFDEFSDDDE
Sbjct: 121 EKFIKMFYEEMKMQSQVSYLRFDEFSDDDE 150

[Close]

BLAST of MELO3C017926 vs. NCBI nr
Match: gi|778689388|ref|XP_011652950.1| (PREDICTED: uncharacterized protein LOC105435158 [Cucumis sativus])

HSP 1 Score: 255.4 bits (651), Expect = 6.3e-65
Identity = 129/164 (78.66%), Postives = 136/164 (82.93%), Query Frame = 1


Query: 1   MSISTKFFHVRKPWKIL---------RRTFPVDFRPLRRFIKRIVHTTPTPLPHHYAERQ 60
           MS +T+FFHVRK WKI+         RR FPVDFRPLRRFIKRI+H TPTPLP HYAERQ
Sbjct: 1   MSNNTRFFHVRKAWKIILRQWKLHSHRRAFPVDFRPLRRFIKRILHPTPTPLPPHYAERQ 60

Query: 61  FSFNDTPIFH-----RRPPSASATTMFQIPRFSCINPKVEFERYDDCEWEEEEEEEEEEE 120
           FSFNDTPIFH     RR PSASA  +F IPRFSCINPKVEFERY+DCEWE    EEEEEE
Sbjct: 61  FSFNDTPIFHLKFHSRRAPSASAA-LFLIPRFSCINPKVEFERYEDCEWERRNYEEEEEE 120

Query: 121 EEEEEEEDGIDLKAEKFIKMFYEEMKMQSQVSYLRFDEFSDDDE 151
           EEEEEEEDGIDLKAEKFIKMFYEEMKMQSQVSYLRFDEFSD +E
Sbjct: 121 EEEEEEEDGIDLKAEKFIKMFYEEMKMQSQVSYLRFDEFSDGEE 163

[Close]

BLAST of MELO3C017926 vs. NCBI nr
Match: gi|747065868|ref|XP_011079592.1| (PREDICTED: uncharacterized protein LOC105163071 [Sesamum indicum])

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-16
Identity = 51/140 (36.43%), Postives = 81/140 (57.86%), Query Frame = 1


Query: 28  LRRFIKRIVHTTPTPLPHHYAERQFSFNDTPIFHRRPPSASATTMFQIPRFSCINPKVEF 87
           L  ++++++H+        Y +R+FSF+DTPI H +    S++  F++P   CI P+V+F
Sbjct: 46  LNIYVRKLLHSNDARGALAYGDREFSFDDTPIIHVKMHRGSSSLRFKMPHIPCIKPQVDF 105

Query: 88  ER---YDDCE---------------------WEEEEEEEEEEEEEEEEEEDGIDLKAEKF 144
           E    YDD E                      ++ EE++EEEE  E  +++ IDLKAE+F
Sbjct: 106 EYDFDYDDDEDVANDQDEMSSDREQRRRLSFLKDVEEDDEEEETNESCDDEEIDLKAEEF 165

[Close]

BLAST of MELO3C017926 vs. NCBI nr
Match: gi|702500596|ref|XP_010038265.1| (PREDICTED: uncharacterized protein LOC104426800 [Eucalyptus grandis])

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12
Identity = 47/116 (40.52%), Postives = 67/116 (57.76%), Query Frame = 1


Query: 47  YAERQFSFNDTPIFHRRP--PSASATTMFQIPRFSCINPKVEFER--YDDCEWEEEEEE- 106
           Y ER+ SF++TPIFH +   P  S  + F++PR  CI+P V+FE   +DD +    E + 
Sbjct: 65  YEERELSFDETPIFHVKMHRPRGSRRSHFRLPRIPCISPDVDFEYGFFDDDKDGNCERKS 124

Query: 107 -------------EEEEEEEEEEEEDGIDLKAEKFIKMFYEEMKMQSQVSYLRFDE 145
                        E      EEE+E+GID +AE+FI  FYE+MK+Q Q SYL++ E
Sbjct: 125 LVAVRDGGDCVYGERASGSSEEEKEEGIDERAEEFIGKFYEQMKLQRQTSYLQYTE 180

The following BLAST results are available for this feature:

BLAST of MELO3C017926 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYA9_CUCSA	4.4e-65	78.66	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G002580 PE=4 SV=1	[more]

BLAST of MELO3C017926 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G02170.1	2.4e-14	34.62	unknown protein	[more]

BLAST of MELO3C017926 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659108630\|ref\|XP_008454304.1\|	1.8e-83	100.00	PREDICTED: neuronal acetylcholine receptor subunit alpha-2-like [Cucumis melo]	[more]
gi\|778689388\|ref\|XP_011652950.1\|	6.3e-65	78.66	PREDICTED: uncharacterized protein LOC105435158 [Cucumis sativus]	[more]
gi\|747065868\|ref\|XP_011079592.1\|	1.1e-16	36.43	PREDICTED: uncharacterized protein LOC105163071 [Sesamum indicum]	[more]
gi\|702500596\|ref\|XP_010038265.1\|	1.6e-12	40.52	PREDICTED: uncharacterized protein LOC104426800 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008480	DUF761_pln

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU56463	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C017926T1	MELO3C017926T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU56463	MU56463	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 113..144 score: 1.9
None	No IPR available	unknown	Coil	Coil	coord: 90..121 scor
None	No IPR available	PANTHER	PTHR33265	FAMILY NOT NAMED	coord: 16..149 score: 4.6
None	No IPR available	PANTHER	PTHR33265:SF5	SUBFAMILY NOT NAMED	coord: 16..149 score: 4.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C017926	Csa4G002580	Cucumber (Chinese Long) v2	cumeB312
MELO3C017926	Cla017377	Watermelon (97103) v1	mewmB497
MELO3C017926	Cla015122	Watermelon (97103) v1	mewmB490
MELO3C017926	ClCG09G005270	Watermelon (Charleston Gray)	mewcgB446
MELO3C017926	Cla97C10G194130	Watermelon (97103) v2	mewmbB463
MELO3C017926	Cla97C09G167740	Watermelon (97103) v2	mewmbB509
MELO3C017926	Bhi11G001047	Wax gourd	mewgoB564
MELO3C017926	CSPI04G01130	Wild cucumber (PI 183967)	cpimeB310
MELO3C017926	Cucsa.096820	Cucumber (Gy14) v1	cgymeB111
MELO3C017926	CmaCh14G009230	Cucurbita maxima (Rimu)	cmameB245
MELO3C017926	CmoCh14G009490	Cucurbita moschata (Rifu)	cmomeB233
MELO3C017926	CsGy4G001020	Cucumber (Gy14) v2	cgybmeB269
MELO3C017926	Carg11151	Silver-seed gourd	carmeB0813
MELO3C017926	Carg07139	Silver-seed gourd	carmeB0116
MELO3C017926	CsaV3_7G029800	Cucumber (Chinese Long) v3	cucmeB584
MELO3C017926	CsaV3_4G001110	Cucumber (Chinese Long) v3	cucmeB315

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C017926	Silver-seed gourd	carmeB0758
MELO3C017926	Melon (DHL92) v3.5.1	memeB096
MELO3C017926	Cucumber (Gy14) v1	cgymeB372
MELO3C017926	Cucurbita maxima (Rimu)	cmameB347
MELO3C017926	Cucurbita maxima (Rimu)	cmameB434
MELO3C017926	Cucurbita maxima (Rimu)	cmameB854
MELO3C017926	Cucurbita moschata (Rifu)	cmomeB339
MELO3C017926	Cucurbita moschata (Rifu)	cmomeB425
MELO3C017926	Cucurbita moschata (Rifu)	cmomeB836
MELO3C017926	Wild cucumber (PI 183967)	cpimeB572
MELO3C017926	Cucumber (Chinese Long) v2	cumeB561
MELO3C017926	Watermelon (Charleston Gray)	mewcgB453
MELO3C017926	Cucurbita pepo (Zucchini)	cpemeB540
MELO3C017926	Cucurbita pepo (Zucchini)	cpemeB146
MELO3C017926	Cucurbita pepo (Zucchini)	cpemeB318
MELO3C017926	Cucurbita pepo (Zucchini)	cpemeB589
MELO3C017926	Bottle gourd (USVL1VR-Ls)	lsimeB226
MELO3C017926	Bottle gourd (USVL1VR-Ls)	lsimeB269
MELO3C017926	Cucumber (Gy14) v2	cgybmeB501