MELO3C017616.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C017616.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	BnaC03g59480D protein
Location	chr07 : 25689828 .. 25690493 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATAGCCAAACTCAAAACTTTGTGGAGAAATTAGAAGATGCTCTAAAGCACCCACCCAACTTTGAGTTCTGTAAAGTTGTAGCCGTGGGATCCAAATTTTGATAGCTTTTGTTCAAATTTCCATGGAAAGAAGAAGCTCCCATCTTCCATCACTGGTCTCTATTTTCCTCTTCTTCTTCTTCTTCATTTCATGTAATGCCTAACTTATCCCCAGATCGCAAATTCAACTCTCCTAGTTCTTATCGTACCTTATCGAACTTACAGAGAAGGAGAGATCAACAGATCTCTAATTGCGGCGAGAAAGTTTCGGCTTCACAGTGTTCCCAGACCCTCAAATGCCGGTGGTGCCGGAGTGATGTCATCGACGATACCTGCTTCACCAGAGCTGAGGCTTTGAGATTGCCCCAACAGGTCTTTTCCTGTGATTGAATTTCCTCTCTGTATCTCTAATTTTCTTCAGATCTGTTGATTTCCGGTTGTGGGTCATGTGTTTACTTCATTTACTTTGATTTCAATGTACATCGCTGCTGGGTGGTTACTGGTTAGGTCTTTTCTTCTAGCCTTGGTTGGGACACTAGCATTTTGAAATATCAATACAACGTATTTGTTTGAGTTTATTTTAACCGAACTTGCGGATTGGTTGAGTTTGTAATATGTATCACCGA

mRNA sequence

GAATAGCCAAACTCAAAACTTTGTGGAGAAATTAGAAGATGCTCTAAAGCACCCACCCAACTTTGAGTTCTGTAAAGTTGTAGCCGTGGGATCCAAATTTTGATAGCTTTTGTTCAAATTTCCATGGAAAGAAGAAGCTCCCATCTTCCATCACTGGTCTCTATTTTCCTCTTCTTCTTCTTCTTCATTTCATGTAATGCCTAACTTATCCCCAGATCGCAAATTCAACTCTCCTAGTTCTTATCGTACCTTATCGAACTTACAGAGAAGGAGAGATCAACAGATCTCTAATTGCGGCGAGAAAGTTTCGGCTTCACAGTGTTCCCAGACCCTCAAATGCCGGTGGTGCCGGAGTGATGTCATCGACGATACCTGCTTCACCAGAGCTGAGGCTTTGAGATTGCCCCAACAGGTCTTTTCCTGTGATTGAATTTCCTCTCTGTATCTCTAATTTTCTTCAGATCTGTTGATTTCCGGTTGTGGGTCATGTGTTTACTTCATTTACTTTGATTTCAATGTACATCGCTGCTGGGTGGTTACTGGTTAGGTCTTTTCTTCTAGCCTTGGTTGGGACACTAGCATTTTGAAATATCAATACAACGTATTTGTTTGAGTTTATTTTAACCGAACTTGCGGATTGGTTGAGTTTGTAATATGTATCACCGA

Coding sequence (CDS)

ATGCCTAACTTATCCCCAGATCGCAAATTCAACTCTCCTAGTTCTTATCGTACCTTATCGAACTTACAGAGAAGGAGAGATCAACAGATCTCTAATTGCGGCGAGAAAGTTTCGGCTTCACAGTGTTCCCAGACCCTCAAATGCCGGTGGTGCCGGAGTGATGTCATCGACGATACCTGCTTCACCAGAGCTGAGGCTTTGAGATTGCCCCAACAGGTCTTTTCCTGTGATTGA

Protein sequence

MPNLSPDRKFNSPSSYRTLSNLQRRRDQQISNCGEKVSASQCSQTLKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD

Homology

[Close]

BLAST of MELO3C017616.2 vs. NCBI nr
Match: KGN65599.1 (hypothetical protein Csa_1G467180 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 2.4e-32
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 4   LSPDRKFNSPSSYRTLSNLQRRRDQQISNCGEKVSASQCSQTLKCRWCRSDVIDDTCFTR 63
           LSPDRKFNSPSSYRTLS+LQRRRDQQISNCGEKVSA QCSQT KCRWCRSD+IDDTCFTR
Sbjct: 30  LSPDRKFNSPSSYRTLSSLQRRRDQQISNCGEKVSALQCSQTPKCRWCRSDIIDDTCFTR 89

Query: 64  AEALRLPQQVFSCD 78
           AEALRLPQQVFSCD
Sbjct: 90  AEALRLPQQVFSCD 103

[Close]

BLAST of MELO3C017616.2 vs. NCBI nr
Match: EOY27907.1 (Uncharacterized protein TCM_029626 [Theobroma cacao])

HSP 1 Score: 86.3 bits (212), Expect = 5.1e-14
Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 0


Query: 12  SPSSYRTLSNLQRRRDQQISNCGEKVSASQCSQTLKCRWCRSDVIDDTCFTRAEALRLPQ 71
           S S YRTL  LQR    QI +CGE +S SQC Q  KCRWC S+ +D+ CF++AEA RLPQ
Sbjct: 42  SVSRYRTLLGLQRNTKNQIPSCGEMMSRSQCLQNPKCRWCHSEALDNLCFSKAEAWRLPQ 101

Query: 72  QVFSCD 78
           QVF CD
Sbjct: 102 QVFLCD 107

[Close]

BLAST of MELO3C017616.2 vs. NCBI nr
Match: OMO65460.1 (hypothetical protein COLO4_31211 [Corchorus olitorius])

HSP 1 Score: 86.3 bits (212), Expect = 5.1e-14
Identity = 39/64 (60.94%), Postives = 46/64 (71.88%), Query Frame = 0


Query: 14 SSYRTLSNLQRRRDQQISNCGEKVSASQCSQTLKCRWCRSDVIDDTCFTRAEALRLPQQV 73
          S +R+L  LQR    QI NCGE +S SQC Q  KCRWCRS+ +DD CF ++EA RLPQQV
Sbjct: 36 SRFRSLLALQRNNKNQIPNCGEMMSRSQCLQNPKCRWCRSEALDDMCFIKSEAWRLPQQV 95

Query: 74 FSCD 78
          F CD
Sbjct: 96 FLCD 99

[Close]

BLAST of MELO3C017616.2 vs. NCBI nr
Match: KDP21149.1 (hypothetical protein JCGZ_21620 [Jatropha curcas])

HSP 1 Score: 82.8 bits (203), Expect = 5.6e-13
Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = 0


Query: 14  SSYRTLSNLQRRRDQQISNCGEKVSASQCSQTLKCRWCRSDVIDDTCFTRAEALRLPQQV 73
           +S+R+L   QR   QQI NC   V+ SQCSQ  KCRWC+S+ +DD CF++ EA RLPQQV
Sbjct: 38  ASHRSLLAAQRNAQQQIPNCSGMVARSQCSQNPKCRWCKSEALDDMCFSKIEAWRLPQQV 97

Query: 74  FSCD 78
           F CD
Sbjct: 98  FVCD 101

[Close]

BLAST of MELO3C017616.2 vs. NCBI nr
Match: OVA16130.1 (hypothetical protein BVC80_8927g10 [Macleaya cordata])

HSP 1 Score: 82.4 bits (202), Expect = 7.3e-13
Identity = 37/53 (69.81%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 25  RRDQQISNCGEKVSASQCSQTLKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD 78
           RR  QISNC EK S SQC Q  KC+WCRSD IDD CF+ +EA RLPQQVF CD
Sbjct: 52  RRSNQISNCREKNSKSQCLQNTKCKWCRSDAIDDMCFSSSEAWRLPQQVFFCD 104

[Close]

BLAST of MELO3C017616.2 vs. TrEMBL
Match: tr|A0A0A0LX55|A0A0A0LX55_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G467180 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.6e-32
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 4   LSPDRKFNSPSSYRTLSNLQRRRDQQISNCGEKVSASQCSQTLKCRWCRSDVIDDTCFTR 63
           LSPDRKFNSPSSYRTLS+LQRRRDQQISNCGEKVSA QCSQT KCRWCRSD+IDDTCFTR
Sbjct: 30  LSPDRKFNSPSSYRTLSSLQRRRDQQISNCGEKVSALQCSQTPKCRWCRSDIIDDTCFTR 89

Query: 64  AEALRLPQQVFSCD 78
           AEALRLPQQVFSCD
Sbjct: 90  AEALRLPQQVFSCD 103

[Close]

BLAST of MELO3C017616.2 vs. TrEMBL
Match: tr|A0A061GFG8|A0A061GFG8_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_029626 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.3e-14
Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 0


Query: 12  SPSSYRTLSNLQRRRDQQISNCGEKVSASQCSQTLKCRWCRSDVIDDTCFTRAEALRLPQ 71
           S S YRTL  LQR    QI +CGE +S SQC Q  KCRWC S+ +D+ CF++AEA RLPQ
Sbjct: 42  SVSRYRTLLGLQRNTKNQIPSCGEMMSRSQCLQNPKCRWCHSEALDNLCFSKAEAWRLPQ 101

Query: 72  QVFSCD 78
           QVF CD
Sbjct: 102 QVFLCD 107

[Close]

BLAST of MELO3C017616.2 vs. TrEMBL
Match: tr|A0A1R3H5C1|A0A1R3H5C1_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_31211 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.3e-14
Identity = 39/64 (60.94%), Postives = 46/64 (71.88%), Query Frame = 0


Query: 14 SSYRTLSNLQRRRDQQISNCGEKVSASQCSQTLKCRWCRSDVIDDTCFTRAEALRLPQQV 73
          S +R+L  LQR    QI NCGE +S SQC Q  KCRWCRS+ +DD CF ++EA RLPQQV
Sbjct: 36 SRFRSLLALQRNNKNQIPNCGEMMSRSQCLQNPKCRWCRSEALDDMCFIKSEAWRLPQQV 95

Query: 74 FSCD 78
          F CD
Sbjct: 96 FLCD 99

[Close]

BLAST of MELO3C017616.2 vs. TrEMBL
Match: tr|A0A067JNS3|A0A067JNS3_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_21620 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.7e-13
Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = 0


Query: 14  SSYRTLSNLQRRRDQQISNCGEKVSASQCSQTLKCRWCRSDVIDDTCFTRAEALRLPQQV 73
           +S+R+L   QR   QQI NC   V+ SQCSQ  KCRWC+S+ +DD CF++ EA RLPQQV
Sbjct: 38  ASHRSLLAAQRNAQQQIPNCSGMVARSQCSQNPKCRWCKSEALDDMCFSKIEAWRLPQQV 97

Query: 74  FSCD 78
           F CD
Sbjct: 98  FVCD 101

[Close]

BLAST of MELO3C017616.2 vs. TrEMBL
Match: tr|A0A200R0E3|A0A200R0E3_9MAGN (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_8927g10 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.8e-13
Identity = 37/53 (69.81%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 25  RRDQQISNCGEKVSASQCSQTLKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD 78
           RR  QISNC EK S SQC Q  KC+WCRSD IDD CF+ +EA RLPQQVF CD
Sbjct: 52  RRSNQISNCREKNSKSQCLQNTKCKWCRSDAIDDMCFSSSEAWRLPQQVFFCD 104

The following BLAST results are available for this feature:

BLAST of MELO3C017616.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65599.1	2.4e-32	94.59	hypothetical protein Csa_1G467180 [Cucumis sativus]	[more]
EOY27907.1	5.1e-14	60.61	Uncharacterized protein TCM_029626 [Theobroma cacao]	[more]
OMO65460.1	5.1e-14	60.94	hypothetical protein COLO4_31211 [Corchorus olitorius]	[more]
KDP21149.1	5.6e-13	57.81	hypothetical protein JCGZ_21620 [Jatropha curcas]	[more]
OVA16130.1	7.3e-13	69.81	hypothetical protein BVC80_8927g10 [Macleaya cordata]	[more]

BLAST of MELO3C017616.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C017616.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C017616.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LX55\|A0A0A0LX55_CUCSA	1.6e-32	94.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G467180 PE=4 SV=1	[more]
tr\|A0A061GFG8\|A0A061GFG8_THECC	3.3e-14	60.61	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_029626 PE=4 SV=1	[more]
tr\|A0A1R3H5C1\|A0A1R3H5C1_9ROSI	3.3e-14	60.94	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_31211 PE=4 SV=1	[more]
tr\|A0A067JNS3\|A0A067JNS3_JATCU	3.7e-13	57.81	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_21620 PE=4 SV=1	[more]
tr\|A0A200R0E3\|A0A200R0E3_9MAGN	4.8e-13	69.81	Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_8927g10 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C017616.2.1	MELO3C017616.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36896	FAMILY NOT NAMED	coord: 20..77

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C017616.2	Silver-seed gourd	carmedB0388
MELO3C017616.2	Silver-seed gourd	carmedB0872
MELO3C017616.2	Cucumber (Chinese Long) v3	cucmedB307
MELO3C017616.2	Watermelon (97103) v2	medwmbB451
MELO3C017616.2	Watermelon (97103) v2	medwmbB491
MELO3C017616.2	Wax gourd	medwgoB573
MELO3C017616.2	Cucumber (Gy14) v2	cgybmedB266
MELO3C017616.2	Cucurbita pepo (Zucchini)	cpemedB244
MELO3C017616.2	Cucumber (Gy14) v1	cgymedB109
MELO3C017616.2	Cucurbita maxima (Rimu)	cmamedB355
MELO3C017616.2	Cucurbita maxima (Rimu)	cmamedB791
MELO3C017616.2	Cucurbita moschata (Rifu)	cmomedB343
MELO3C017616.2	Cucurbita moschata (Rifu)	cmomedB788
MELO3C017616.2	Cucurbita pepo (Zucchini)	cpemedB497
MELO3C017616.2	Wild cucumber (PI 183967)	cpimedB301
MELO3C017616.2	Cucumber (Chinese Long) v2	cumedB297
MELO3C017616.2	Bottle gourd (USVL1VR-Ls)	lsimedB471
MELO3C017616.2	Watermelon (Charleston Gray)	medwcgB488
MELO3C017616.2	Watermelon (97103) v1	medwmB493