MELO3C017616 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C017616
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Nucleotide-diphospho-sugar transferase family protein
Location	chr7 : 23505204 .. 23505512 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGAAGAAGCTCCCATCTTCCATCACTGGTCTCTATTTTCCTCTTCTTCTTCTTCTTCATTTCATGTAATGCTTCTAACTTATCCCCAGATCGCAAATTCAACTCTCCTAGTTCTTATCGTACCTTATCGAACTTACAGAGAAGGAGAGATCAACAGATCTCTAATTGCGGCGAGAAAGTTTCGGCTTCACAGTGTTCCCAGACCCTCAAATGCCGGTGGTGCCGGAGTGATGTCATCGACGATACCTGCTTCACCAGAGCTGAGGCTTTGAGATTGCCCCAACAGGTCTTTTCCTGTGATTGA

mRNA sequence

ATGGAAAGAAGAAGCTCCCATCTTCCATCACTGGTCTCTATTTTCCTCTTCTTCTTCTTCTTCATTTCATGTAATGCTTCTAACTTATCCCCAGATCGCAAATTCAACTCTCCTAGTTCTTATCGTACCTTATCGAACTTACAGAGAAGGAGAGATCAACAGATCTCTAATTGCGGCGAGAAAGTTTCGGCTTCACAGTGTTCCCAGACCCTCAAATGCCGGTGGTGCCGGAGTGATGTCATCGACGATACCTGCTTCACCAGAGCTGAGGCTTTGAGATTGCCCCAACAGGTCTTTTCCTGTGATTGA

Coding sequence (CDS)

ATGGAAAGAAGAAGCTCCCATCTTCCATCACTGGTCTCTATTTTCCTCTTCTTCTTCTTCTTCATTTCATGTAATGCTTCTAACTTATCCCCAGATCGCAAATTCAACTCTCCTAGTTCTTATCGTACCTTATCGAACTTACAGAGAAGGAGAGATCAACAGATCTCTAATTGCGGCGAGAAAGTTTCGGCTTCACAGTGTTCCCAGACCCTCAAATGCCGGTGGTGCCGGAGTGATGTCATCGACGATACCTGCTTCACCAGAGCTGAGGCTTTGAGATTGCCCCAACAGGTCTTTTCCTGTGATTGA

Protein sequence

MERRSSHLPSLVSIFLFFFFFISCNASNLSPDRKFNSPSSYRTLSNLQRRRDQQISNCGEKVSASQCSQTLKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD*

Homology

[Close]

BLAST of MELO3C017616 vs. TrEMBL
Match: A0A0A0LX55_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G467180 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.2e-43
Identity = 92/105 (87.62%), Postives = 95/105 (90.48%), Query Frame = 1


Query: 1   MERRSSHLPSLVSIFLF---FFFFISCNASNLSPDRKFNSPSSYRTLSNLQRRRDQQISN 60
           MERRSSHL S +SIFL    FFFFISCNA  LSPDRKFNSPSSYRTLS+LQRRRDQQISN
Sbjct: 1   MERRSSHLSSPLSIFLISFLFFFFISCNA--LSPDRKFNSPSSYRTLSSLQRRRDQQISN 60

Query: 61  CGEKVSASQCSQTLKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD 103
           CGEKVSA QCSQT KCRWCRSD+IDDTCFTRAEALRLPQQVFSCD
Sbjct: 61  CGEKVSALQCSQTPKCRWCRSDIIDDTCFTRAEALRLPQQVFSCD 103

[Close]

BLAST of MELO3C017616 vs. TrEMBL
Match: A0A061GFG8_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_029626 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.8e-17
Identity = 52/107 (48.60%), Postives = 64/107 (59.81%), Query Frame = 1


Query: 1   MERRSSHLPSLVSIFLFFFFFIS--CNASNLSPDR---KFNSPSSYRTLSNLQRRRDQQI 60
           M   SS L +L  I       +S   ++S+ SPD    K  S S YRTL  LQR    QI
Sbjct: 1   MATASSKLSALFPILFLLLLTLSQSSSSSSSSPDNITGKEPSVSRYRTLLGLQRNTKNQI 60

Query: 61  SNCGEKVSASQCSQTLKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD 103
            +CGE +S SQC Q  KCRWC S+ +D+ CF++AEA RLPQQVF CD
Sbjct: 61  PSCGEMMSRSQCLQNPKCRWCHSEALDNLCFSKAEAWRLPQQVFLCD 107

[Close]

BLAST of MELO3C017616 vs. TrEMBL
Match: A0A067JNS3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21620 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 7.5e-16
Identity = 46/98 (46.94%), Postives = 59/98 (60.20%), Query Frame = 1


Query: 8   LPSLVSIFLFFFFFISCNASNLSPDRKFNSPS---SYRTLSNLQRRRDQQISNCGEKVSA 67
           + S +S  +F  F  +   S+LS       PS   S+R+L   QR   QQI NC   V+ 
Sbjct: 4   ISSTISFSIFLIFLATLLQSSLSYASTTQDPSLIASHRSLLAAQRNAQQQIPNCSGMVAR 63

Query: 68  SQCSQTLKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD 103
           SQCSQ  KCRWC+S+ +DD CF++ EA RLPQQVF CD
Sbjct: 64  SQCSQNPKCRWCKSEALDDMCFSKIEAWRLPQQVFVCD 101

[Close]

BLAST of MELO3C017616 vs. TrEMBL
Match: A0A0D2UJX6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G240500 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.0e-12
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 1


Query: 44  LSNLQRRRDQQISNCGEKVSASQCSQTLKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD 103
           L++ + ++  QI NCGE VS SQC Q  KCRWCRS+ +DD CF +AEA RLPQQVF C+
Sbjct: 52  LASQRNKKMNQIPNCGEMVSRSQCLQNPKCRWCRSEALDDMCFKKAEAWRLPQQVFLCN 110

[Close]

BLAST of MELO3C017616 vs. TrEMBL
Match: A0A0K9RDA2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_079290 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-12
Identity = 39/95 (41.05%), Postives = 53/95 (55.79%), Query Frame = 1


Query: 8   LPSLVSIFLFFFFFISCNASNLSPDRKFNSPSSYRTLSNLQRRRDQQISNCGEKVSASQC 67
           LP  + I L F +  S ++  +   R   + S ++   N Q+    QI NC E V+ S C
Sbjct: 14  LPLFILILLLFNYTSSGSSMAIGSSRNLQAASVHKQTDNTQKN---QIPNCSEIVAKSHC 73

Query: 68  SQTLKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD 103
           S   KCRWCRSDV+D TC T ++A R P Q+F CD
Sbjct: 74  SSNPKCRWCRSDVLDSTCSTTSDAWRFPSQIFICD 105

[Close]

BLAST of MELO3C017616 vs. NCBI nr
Match: gi|700210503|gb|KGN65599.1| (hypothetical protein Csa_1G467180 [Cucumis sativus])

HSP 1 Score: 181.8 bits (460), Expect = 6.1e-43
Identity = 92/105 (87.62%), Postives = 95/105 (90.48%), Query Frame = 1


Query: 1   MERRSSHLPSLVSIFLF---FFFFISCNASNLSPDRKFNSPSSYRTLSNLQRRRDQQISN 60
           MERRSSHL S +SIFL    FFFFISCNA  LSPDRKFNSPSSYRTLS+LQRRRDQQISN
Sbjct: 1   MERRSSHLSSPLSIFLISFLFFFFISCNA--LSPDRKFNSPSSYRTLSSLQRRRDQQISN 60

Query: 61  CGEKVSASQCSQTLKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD 103
           CGEKVSA QCSQT KCRWCRSD+IDDTCFTRAEALRLPQQVFSCD
Sbjct: 61  CGEKVSALQCSQTPKCRWCRSDIIDDTCFTRAEALRLPQQVFSCD 103

[Close]

BLAST of MELO3C017616 vs. NCBI nr
Match: gi|590623300|ref|XP_007025285.1| (Uncharacterized protein TCM_029626 [Theobroma cacao])

HSP 1 Score: 94.7 bits (234), Expect = 9.8e-17
Identity = 52/107 (48.60%), Postives = 64/107 (59.81%), Query Frame = 1


Query: 1   MERRSSHLPSLVSIFLFFFFFIS--CNASNLSPDR---KFNSPSSYRTLSNLQRRRDQQI 60
           M   SS L +L  I       +S   ++S+ SPD    K  S S YRTL  LQR    QI
Sbjct: 1   MATASSKLSALFPILFLLLLTLSQSSSSSSSSPDNITGKEPSVSRYRTLLGLQRNTKNQI 60

Query: 61  SNCGEKVSASQCSQTLKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD 103
            +CGE +S SQC Q  KCRWC S+ +D+ CF++AEA RLPQQVF CD
Sbjct: 61  PSCGEMMSRSQCLQNPKCRWCHSEALDNLCFSKAEAWRLPQQVFLCD 107

[Close]

BLAST of MELO3C017616 vs. NCBI nr
Match: gi|643704085|gb|KDP21149.1| (hypothetical protein JCGZ_21620 [Jatropha curcas])

HSP 1 Score: 91.3 bits (225), Expect = 1.1e-15
Identity = 46/98 (46.94%), Postives = 59/98 (60.20%), Query Frame = 1


Query: 8   LPSLVSIFLFFFFFISCNASNLSPDRKFNSPS---SYRTLSNLQRRRDQQISNCGEKVSA 67
           + S +S  +F  F  +   S+LS       PS   S+R+L   QR   QQI NC   V+ 
Sbjct: 4   ISSTISFSIFLIFLATLLQSSLSYASTTQDPSLIASHRSLLAAQRNAQQQIPNCSGMVAR 63

Query: 68  SQCSQTLKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD 103
           SQCSQ  KCRWC+S+ +DD CF++ EA RLPQQVF CD
Sbjct: 64  SQCSQNPKCRWCKSEALDDMCFSKIEAWRLPQQVFVCD 101

[Close]

BLAST of MELO3C017616 vs. NCBI nr
Match: gi|763801396|gb|KJB68351.1| (hypothetical protein B456_010G240500 [Gossypium raimondii])

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-12
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 1


Query: 44  LSNLQRRRDQQISNCGEKVSASQCSQTLKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD 103
           L++ + ++  QI NCGE VS SQC Q  KCRWCRS+ +DD CF +AEA RLPQQVF C+
Sbjct: 52  LASQRNKKMNQIPNCGEMVSRSQCLQNPKCRWCRSEALDDMCFKKAEAWRLPQQVFLCN 110

[Close]

BLAST of MELO3C017616 vs. NCBI nr
Match: gi|902216720|gb|KNA17511.1| (hypothetical protein SOVF_079290 [Spinacia oleracea])

HSP 1 Score: 80.5 bits (197), Expect = 1.9e-12
Identity = 39/95 (41.05%), Postives = 53/95 (55.79%), Query Frame = 1


Query: 8   LPSLVSIFLFFFFFISCNASNLSPDRKFNSPSSYRTLSNLQRRRDQQISNCGEKVSASQC 67
           LP  + I L F +  S ++  +   R   + S ++   N Q+    QI NC E V+ S C
Sbjct: 14  LPLFILILLLFNYTSSGSSMAIGSSRNLQAASVHKQTDNTQKN---QIPNCSEIVAKSHC 73

Query: 68  SQTLKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD 103
           S   KCRWCRSDV+D TC T ++A R P Q+F CD
Sbjct: 74  SSNPKCRWCRSDVLDSTCSTTSDAWRFPSQIFICD 105

The following BLAST results are available for this feature:

BLAST of MELO3C017616 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LX55_CUCSA	4.2e-43	87.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G467180 PE=4 SV=1	[more]
A0A061GFG8_THECC	6.8e-17	48.60	Uncharacterized protein OS=Theobroma cacao GN=TCM_029626 PE=4 SV=1	[more]
A0A067JNS3_JATCU	7.5e-16	46.94	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21620 PE=4 SV=1	[more]
A0A0D2UJX6_GOSRA	1.0e-12	59.32	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G240500 PE=4 SV=1	[more]
A0A0K9RDA2_SPIOL	1.3e-12	41.05	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_079290 PE=4 SV=1	[more]

BLAST of MELO3C017616 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210503\|gb\|KGN65599.1\|	6.1e-43	87.62	hypothetical protein Csa_1G467180 [Cucumis sativus]	[more]
gi\|590623300\|ref\|XP_007025285.1\|	9.8e-17	48.60	Uncharacterized protein TCM_029626 [Theobroma cacao]	[more]
gi\|643704085\|gb\|KDP21149.1\|	1.1e-15	46.94	hypothetical protein JCGZ_21620 [Jatropha curcas]	[more]
gi\|763801396\|gb\|KJB68351.1\|	1.5e-12	59.32	hypothetical protein B456_010G240500 [Gossypium raimondii]	[more]
gi\|902216720\|gb\|KNA17511.1\|	1.9e-12	41.05	hypothetical protein SOVF_079290 [Spinacia oleracea]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C017616T1	MELO3C017616T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36896	FAMILY NOT NAMED	coord: 42..102 score: 2.4
None	No IPR available	PROFILE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..24 score:

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C017616	Cucumber (Gy14) v1	cgymeB111
MELO3C017616	Cucurbita maxima (Rimu)	cmameB304
MELO3C017616	Cucurbita maxima (Rimu)	cmameB702
MELO3C017616	Cucurbita moschata (Rifu)	cmomeB299
MELO3C017616	Cucurbita moschata (Rifu)	cmomeB694
MELO3C017616	Wild cucumber (PI 183967)	cpimeB310
MELO3C017616	Cucumber (Chinese Long) v2	cumeB312
MELO3C017616	Watermelon (Charleston Gray)	mewcgB493
MELO3C017616	Watermelon (97103) v1	mewmB506
MELO3C017616	Cucurbita pepo (Zucchini)	cpemeB202
MELO3C017616	Cucurbita pepo (Zucchini)	cpemeB425
MELO3C017616	Bottle gourd (USVL1VR-Ls)	lsimeB454
MELO3C017616	Cucumber (Gy14) v2	cgybmeB269
MELO3C017616	Silver-seed gourd	carmeB0384
MELO3C017616	Silver-seed gourd	carmeB0862
MELO3C017616	Cucumber (Chinese Long) v3	cucmeB315
MELO3C017616	Watermelon (97103) v2	mewmbB457
MELO3C017616	Watermelon (97103) v2	mewmbB498
MELO3C017616	Wax gourd	mewgoB568