MELO3C017283 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C017283
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionCoffea canephora DH200=94 genomic scaffold, scaffold_2
Locationchr2 : 23815398 .. 23815811 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCTTCTCCACTCCCGAACATCCTCCCACCCCCGGTTCCGGCAGGTCGGCGAACACCCCATCCACCGGCCTCCGCCGCTCCCTCACAGCACTAGCAGCTCTCTGCGCCAAAAAAGCTGCCCTACTCACCAAAAAACTTAAATCCAAGCCGAGTCAAGACCACCCGAGTCACCCAAGTTACCCGAGTCCGAGGTCACCATTGGCTCGGCCGAAGAAGATGCTGAAGACAATAAGTCAATCGGCGATGAATTTGGTTCACAAGAAAAGGACCGGCCGACAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAAAGTGGGGCCAGGGTGGGGTATGGCAGGGGAATCTTGATGGGGGACAAATGTCAACCGTTGGATTTTTCGGGTGCAATTTATTACGATAG

mRNA sequence

ATGCTCTTCTCCACTCCCGAACATCCTCCCACCCCCGGTTCCGGCAGGTCGGCGAACACCCCATCCACCGGCCTCCGCCGCTCCCTCACAGCACTAGCAGCTCTCTGCGCCAAAAAAGCTGCCCTACTCACCAAAAAACTTAAATCCAAGCCGAGTCAAGACCACCCGAGTCACCCAAGTTACCCGAGTCCGAGGTCACCATTGGCTCGGCCGAAGAAGATGCTGAAGACAATAAGTCAATCGGCGATGAATTTGGTTCACAAGAAAAGGACCGGCCGACAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAAAGTGGGGCCAGGGTGGGGTATGGCAGGGGAATCTTGATGGGGGACAAATGTCAACCGTTGGATTTTTCGGGTGCAATTTATTACGATAG

Coding sequence (CDS)

ATGCTCTTCTCCACTCCCGAACATCCTCCCACCCCCGGTTCCGGCAGGTCGGCGAACACCCCATCCACCGGCCTCCGCCGCTCCCTCACAGCACTAGCAGCTCTCTGCGCCAAAAAAGCTGCCCTACTCACCAAAAAACTTAAATCCAAGCCGAGTCAAGACCACCCGAGTCACCCAAGTTACCCGAGTCCGAGGTCACCATTGGCTCGGCCGAAGAAGATGCTGAAGACAATAAGTCAATCGGCGATGAATTTGGTTCACAAGAAAAGGACCGGCCGACAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAAAGTGGGGCCAGGGTGGGGTATGGCAGGGGAATCTTGATGGGGGACAAATGTCAACCGTTGGATTTTTCGGGTGCAATTTATTACGATAG

Protein sequence

MLFSTPEHPPTPGSGRSANTPSTGLRRSLTALAALCAKKAALLTKKLKSKPSQDHPSHPSYPSPRSPLARPKKMLKTISQSAMNLVHKKRTGRQEEEEEEEEEEEEEEKWGQGGVWQGNLDGGQMSTVGFFGCNLLR*
Homology
[Close]
BLAST of MELO3C017283 vs. TrEMBL
Match: A0A0A0LPH9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G015870 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.0e-47
Identity = 105/133 (78.95%), Postives = 111/133 (83.46%), Query Frame = 1 

Query: 1   MLFSTPEHPPTPGSGRSANTPSTGLRRSLTALAALCAKKAALLTKKLKSKPSQDHPSHPS 60
           MLFSTP+HPPTP SGR+A TPSTGLR S+ ALAALCAKKAALLTKKLK KPSQDHPSH  
Sbjct: 1   MLFSTPDHPPTPDSGRTAKTPSTGLRGSVAALAALCAKKAALLTKKLKFKPSQDHPSH-- 60

Query: 61  YPSPRSPLARPKKMLKTISQSAMNLVHKKRTGRQEEEEEEEEEEEEEEKWGQGGVWQ-GN 120
            PSPRSPLARPKKMLKTISQSAM+LVHKKRTGR     EEEEEEEEEEKWGQGGVWQ G 
Sbjct: 61  -PSPRSPLARPKKMLKTISQSAMSLVHKKRTGR---PVEEEEEEEEEEKWGQGGVWQRGI 120

Query: 121 LDGGQMSTVGFFG 133
           L G +   + F G
Sbjct: 121 LMGDKCQPLDFSG 127

[Close]
BLAST of MELO3C017283 vs. TrEMBL
Match: W9S6B5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022292 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.2e-10
Identity = 45/126 (35.71%), Postives = 73/126 (57.94%), Query Frame = 1 

Query: 9   PPTPGSGRSANTPSTGLRRSLTALAALCAKKAALLTKKLKSKPSQDH-PSHPSYPSPRSP 68
           P TP    +  T + GL  S+ A A + +K A+ ++KKLK  P+  + PS  + P   +P
Sbjct: 5   PETPDRNSTKRT-TAGLVASVLAFAYMFSKHASRVSKKLKPTPATPNKPSWKTAPPSPAP 64

Query: 69  LARPKKMLKTISQSAMNLVHKKRTGRQEEEEEEEEEEEEEEKWGQGGVWQGN-LDGGQMS 128
             +PKK+L TIS  A+ LV++K+     + + +E  E+++E+WG GGVWQ + L G +  
Sbjct: 65  TRKPKKLLATISNKAITLVNRKK-----KADHDEIMEDDQEEWGHGGVWQRSILMGDKCQ 124

Query: 129 TVGFFG 133
            + F G
Sbjct: 125 PLDFSG 124

[Close]
BLAST of MELO3C017283 vs. NCBI nr
Match: gi|700208699|gb|KGN63795.1| (hypothetical protein Csa_1G015870 [Cucumis sativus])

HSP 1 Score: 197.6 bits (501), Expect = 1.4e-47
Identity = 105/133 (78.95%), Postives = 111/133 (83.46%), Query Frame = 1 

Query: 1   MLFSTPEHPPTPGSGRSANTPSTGLRRSLTALAALCAKKAALLTKKLKSKPSQDHPSHPS 60
           MLFSTP+HPPTP SGR+A TPSTGLR S+ ALAALCAKKAALLTKKLK KPSQDHPSH  
Sbjct: 1   MLFSTPDHPPTPDSGRTAKTPSTGLRGSVAALAALCAKKAALLTKKLKFKPSQDHPSH-- 60

Query: 61  YPSPRSPLARPKKMLKTISQSAMNLVHKKRTGRQEEEEEEEEEEEEEEKWGQGGVWQ-GN 120
            PSPRSPLARPKKMLKTISQSAM+LVHKKRTGR     EEEEEEEEEEKWGQGGVWQ G 
Sbjct: 61  -PSPRSPLARPKKMLKTISQSAMSLVHKKRTGR---PVEEEEEEEEEEKWGQGGVWQRGI 120

Query: 121 LDGGQMSTVGFFG 133
           L G +   + F G
Sbjct: 121 LMGDKCQPLDFSG 127

[Close]
BLAST of MELO3C017283 vs. NCBI nr
Match: gi|703153867|ref|XP_010110791.1| (hypothetical protein L484_022292 [Morus notabilis])

HSP 1 Score: 73.6 bits (179), Expect = 3.1e-10
Identity = 45/126 (35.71%), Postives = 73/126 (57.94%), Query Frame = 1 

Query: 9   PPTPGSGRSANTPSTGLRRSLTALAALCAKKAALLTKKLKSKPSQDH-PSHPSYPSPRSP 68
           P TP    +  T + GL  S+ A A + +K A+ ++KKLK  P+  + PS  + P   +P
Sbjct: 5   PETPDRNSTKRT-TAGLVASVLAFAYMFSKHASRVSKKLKPTPATPNKPSWKTAPPSPAP 64

Query: 69  LARPKKMLKTISQSAMNLVHKKRTGRQEEEEEEEEEEEEEEKWGQGGVWQGN-LDGGQMS 128
             +PKK+L TIS  A+ LV++K+     + + +E  E+++E+WG GGVWQ + L G +  
Sbjct: 65  TRKPKKLLATISNKAITLVNRKK-----KADHDEIMEDDQEEWGHGGVWQRSILMGDKCQ 124

Query: 129 TVGFFG 133
            + F G
Sbjct: 125 PLDFSG 124

The following BLAST results are available for this feature:
BLAST of MELO3C017283 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPH9_CUCSA1.0e-4778.95Uncharacterized protein OS=Cucumis sativus GN=Csa_1G015870 PE=4 SV=1[more]
W9S6B5_9ROSA2.2e-1035.71Uncharacterized protein OS=Morus notabilis GN=L484_022292 PE=4 SV=1[more]
BLAST of MELO3C017283 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208699|gb|KGN63795.1|1.4e-4778.95hypothetical protein Csa_1G015870 [Cucumis sativus][more]
gi|703153867|ref|XP_010110791.1|3.1e-1035.71hypothetical protein L484_022292 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C017283T1MELO3C017283T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 86..109
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C017283Csa1G015870Cucumber (Chinese Long) v2cumeB055
MELO3C017283Bhi02G000005Wax gourdmewgoB292
MELO3C017283CSPI01G03550Wild cucumber (PI 183967)cpimeB056
MELO3C017283Cucsa.198830Cucumber (Gy14) v1cgymeB364
MELO3C017283CsGy1G003500Cucumber (Gy14) v2cgybmeB050
MELO3C017283Carg09165Silver-seed gourdcarmeB0600
MELO3C017283CsaV3_1G003580Cucumber (Chinese Long) v3cucmeB055
MELO3C017283CsaV3_1G006470Cucumber (Chinese Long) v3cucmeB056
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C017283Wax gourdmewgoB285
MELO3C017283Melon (DHL92) v3.5.1memeB028
MELO3C017283Melon (DHL92) v3.5.1memeB066
MELO3C017283Cucumber (Gy14) v1cgymeB161
MELO3C017283Cucumber (Gy14) v1cgymeB478
MELO3C017283Cucurbita maxima (Rimu)cmameB060
MELO3C017283Cucurbita maxima (Rimu)cmameB110
MELO3C017283Cucurbita maxima (Rimu)cmameB120
MELO3C017283Cucurbita maxima (Rimu)cmameB207
MELO3C017283Cucurbita maxima (Rimu)cmameB370
MELO3C017283Cucurbita maxima (Rimu)cmameB372
MELO3C017283Cucurbita maxima (Rimu)cmameB673
MELO3C017283Cucurbita moschata (Rifu)cmomeB051
MELO3C017283Cucurbita moschata (Rifu)cmomeB101
MELO3C017283Cucurbita moschata (Rifu)cmomeB109
MELO3C017283Cucurbita moschata (Rifu)cmomeB191
MELO3C017283Cucurbita moschata (Rifu)cmomeB361
MELO3C017283Wild cucumber (PI 183967)cpimeB058
MELO3C017283Wild cucumber (PI 183967)cpimeB387
MELO3C017283Cucumber (Chinese Long) v2cumeB056
MELO3C017283Cucumber (Chinese Long) v2cumeB392
MELO3C017283Watermelon (Charleston Gray)mewcgB248
MELO3C017283Watermelon (Charleston Gray)mewcgB249
MELO3C017283Watermelon (Charleston Gray)mewcgB254
MELO3C017283Watermelon (97103) v1mewmB275
MELO3C017283Watermelon (97103) v1mewmB281
MELO3C017283Watermelon (97103) v1mewmB289
MELO3C017283Cucurbita pepo (Zucchini)cpemeB034
MELO3C017283Cucurbita pepo (Zucchini)cpemeB336
MELO3C017283Cucurbita pepo (Zucchini)cpemeB395
MELO3C017283Cucurbita pepo (Zucchini)cpemeB483
MELO3C017283Cucurbita pepo (Zucchini)cpemeB615
MELO3C017283Cucurbita pepo (Zucchini)cpemeB624
MELO3C017283Bottle gourd (USVL1VR-Ls)lsimeB209
MELO3C017283Bottle gourd (USVL1VR-Ls)lsimeB294
MELO3C017283Bottle gourd (USVL1VR-Ls)lsimeB397
MELO3C017283Cucumber (Gy14) v2cgybmeB052
MELO3C017283Cucumber (Gy14) v2cgybmeB336
MELO3C017283Silver-seed gourdcarmeB0396
MELO3C017283Silver-seed gourdcarmeB0469
MELO3C017283Silver-seed gourdcarmeB0599
MELO3C017283Silver-seed gourdcarmeB0835
MELO3C017283Silver-seed gourdcarmeB1011
MELO3C017283Cucumber (Chinese Long) v3cucmeB401
MELO3C017283Watermelon (97103) v2mewmbB261
MELO3C017283Watermelon (97103) v2mewmbB253
MELO3C017283Watermelon (97103) v2mewmbB255