MELO3C016998 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C016998
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	U11/U12 small nuclear ribonucleoprotein 25 kDa
Location	chr7 : 530103 .. 531263 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGTCACTGGCGGCGACGCCTGCTGTTGCAGATCAGGCGGCGTGAACTGAGTCCGGCCGAGACGGTGGTTACCCAAACGGCAGTCACCTACCGGGAGCCCTGCAGCGAATTGTCAGCTTCGCAACCTCCGTGAACAGTCTGGTCATTTTTCCCATTTAAGGTGAGGTTTAATATTTTAGTCTTCGATTGATTTGTGTAAGAATTTTTTCGAAATTTGTTGTTTGGGATTTCAAATATTTTGTTTAAATAACCTTTGGAAGTAGAATAGTCTGCTGAGTGAAATGTTTTGTTTGGGTCTCAATAAAATAATTTGGAAGCAAAATTGTGTAGCAATGAAGGAAAACGGAGATGGATCAATGAAATCCATGAGTAAAGATGAAGAGAATGTGGTAGGTTACCACAGCAACAACGTAAAAAAAGTTAGGTTAAATTCAACTCTCGCTGCTCTGCTTGACGATCCTATTCTCGCCGATGTCCCCAAAAATCCCACCCTATCGCACGTCGACACTCTCATCAGCCTCGAATTGGGAAGCGCCATGCGTATCTCCGTTCTTAAGCTCGATGGCACTGCCATTGGTACACACGTTTTCCTAATGTTCCCTTCTCTTTCTCTGTCTGGCATTTTCACAAACACCTTGTTATATGAACAACTGAAACTCAATTCACCATCTTGTTCTTTGTTTAGATGTGCTGATCATGAATTCTGCGACATTGAAAGACTTGAAGCTTGCAATCAAGCAGAAAGTAAACGAGACGGAACAATCCAAGATGGGGCATCGCCACATTTCATGGTACTCTTTCTTGATAGCTCTCTAACCCAATCATTCAATGATCGCTGTTCATTGATTACAATTCCTTCGCTTTTGGATTTGCAGGAAACACGTATGGGCAAATTTTTGCTTAGCACACCACAACGAGAAGATTCTTGATGATAGCTCAGTACTTCAGGATTTTGGAATCCGTAACAATTCTCAGGTTGGATTTTTAGTAGAGTTGGAAGTATTTGAAATTTATCTGAGTTGAATCATTCAATCATTATATACAATGAACAAAAACTTGTTGCAGGTGCGTTTTATCCCATACGTTATGTCAAAGAACTCCAGAACACATTCTAGGAGGAGAAAACACCGATTCTTTCATGGTCTCAACAAATGTGCTTGA

mRNA sequence

ACGTCACTGGCGGCGACGCCTGCTGTTGCAGATCAGGCGGCGTGAACTGAGTCCGGCCGAGACGGTGGTTACCCAAACGGCAGTCACCTACCGGGAGCCCTGCAGCGAATTGTCAGCTTCGCAACCTCCGTGAACAGTCTGGTCATTTTTCCCATTTAAGCAATGAAGGAAAACGGAGATGGATCAATGAAATCCATGAGTAAAGATGAAGAGAATGTGGTAGGTTACCACAGCAACAACGTAAAAAAAGTTAGGTTAAATTCAACTCTCGCTGCTCTGCTTGACGATCCTATTCTCGCCGATGTCCCCAAAAATCCCACCCTATCGCACGTCGACACTCTCATCAGCCTCGAATTGGGAAGCGCCATGCGTATCTCCGTTCTTAAGCTCGATGGCACTGCCATTGATGTGCTGATCATGAATTCTGCGACATTGAAAGACTTGAAGCTTGCAATCAAGCAGAAAGTAAACGAGACGGAACAATCCAAGATGGGGCATCGCCACATTTCATGGAAACACGTATGGGCAAATTTTTGCTTAGCACACCACAACGAGAAGATTCTTGATGATAGCTCAGTACTTCAGGATTTTGGAATCCGTAACAATTCTCAGGTGCGTTTTATCCCATACGTTATGTCAAAGAACTCCAGAACACATTCTAGGAGGAGAAAACACCGATTCTTTCATGGTCTCAACAAATGTGCTTGA

Coding sequence (CDS)

ATGAAGGAAAACGGAGATGGATCAATGAAATCCATGAGTAAAGATGAAGAGAATGTGGTAGGTTACCACAGCAACAACGTAAAAAAAGTTAGGTTAAATTCAACTCTCGCTGCTCTGCTTGACGATCCTATTCTCGCCGATGTCCCCAAAAATCCCACCCTATCGCACGTCGACACTCTCATCAGCCTCGAATTGGGAAGCGCCATGCGTATCTCCGTTCTTAAGCTCGATGGCACTGCCATTGATGTGCTGATCATGAATTCTGCGACATTGAAAGACTTGAAGCTTGCAATCAAGCAGAAAGTAAACGAGACGGAACAATCCAAGATGGGGCATCGCCACATTTCATGGAAACACGTATGGGCAAATTTTTGCTTAGCACACCACAACGAGAAGATTCTTGATGATAGCTCAGTACTTCAGGATTTTGGAATCCGTAACAATTCTCAGGTGCGTTTTATCCCATACGTTATGTCAAAGAACTCCAGAACACATTCTAGGAGGAGAAAACACCGATTCTTTCATGGTCTCAACAAATGTGCTTGA

Protein sequence

MKENGDGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHVWANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKCA*

Homology

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BLAST of MELO3C016998 vs. Swiss-Prot
Match: U1125_ARATH (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana GN=SNRNP25 PE=2 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 3.4e-57
Identity = 107/159 (67.30%), Postives = 129/159 (81.13%), Query Frame = 1


Query: 21  GYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTA 80
           G +    K+ +L S L+ LL DPILADVP+NPTLS V TL+SLE GSAMR+SV+KLDG++
Sbjct: 4   GDYDVETKREKLKSVLSQLLADPILADVPRNPTLSDVVTLVSLEKGSAMRLSVVKLDGSS 63

Query: 81  IDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHVWANFCLAHHNEKILDDSSVL 140
           +DV +MNSATLKDLKL IK+KVNE EQ+ MGHRHISWKHVW+NFCL+ +NEK+LDD++VL
Sbjct: 64  LDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSCNNEKLLDDNAVL 123

Query: 141 QDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNK 180
           QD GIRNNSQV F+PYVM K    HS+R+KHR F  L+K
Sbjct: 124 QDVGIRNNSQVTFMPYVMKKGRGRHSKRKKHRLFRSLHK 162

[Close]

BLAST of MELO3C016998 vs. Swiss-Prot
Match: SNR25_HUMAN (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens GN=SNRNP25 PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.4e-21
Identity = 51/125 (40.80%), Postives = 77/125 (61.60%), Query Frame = 1


Query: 36  LAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLK 95
           LA ++ DP+L D+P   TL  V++ I+LE G AM + V K+DG  + V+++ SAT+ DLK
Sbjct: 8   LAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQSATVLDLK 67

Query: 96  LAIKQKVNETEQSKMGHRHISWKHVWANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIP 155
            AI++ V   ++ + G +HISW +VW  + L    EK+ +D   L+D+GIRN  +V FI 
Sbjct: 68  KAIQRYVQLKQEREGGIQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIK 127

Query: 156 YVMSK 161
            +  K
Sbjct: 128 KLRQK 132

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BLAST of MELO3C016998 vs. Swiss-Prot
Match: SNR25_BOVIN (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus GN=SNRNP25 PE=2 SV=2)

HSP 1 Score: 100.5 bits (249), Expect = 2.0e-20
Identity = 48/122 (39.34%), Postives = 75/122 (61.48%), Query Frame = 1


Query: 39  LLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAI 98
           ++ DP+L D+P   TL  V++ I+LE G AM + V K+DG  + V+++ +AT+ DLK AI
Sbjct: 2   VVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATVLDLKKAI 61

Query: 99  KQKVNETEQSKMGHRHISWKHVWANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVM 158
           ++ V   ++ + G +HISW +VW  + L    EK+ +D   L+D+GIRN  +V FI  + 
Sbjct: 62  QRYVQLRQEREGGIQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIKKLR 121

Query: 159 SK 161
            K
Sbjct: 122 QK 123

[Close]

BLAST of MELO3C016998 vs. Swiss-Prot
Match: SNR25_MOUSE (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus GN=Snrnp25 PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.0e-20
Identity = 48/122 (39.34%), Postives = 75/122 (61.48%), Query Frame = 1


Query: 39  LLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAI 98
           ++ DP+L D+P   TL  V++ I+LE G AM + V K+DG  + V+++ +AT+ DLK AI
Sbjct: 2   VVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATVLDLKKAI 61

Query: 99  KQKVNETEQSKMGHRHISWKHVWANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVM 158
           ++ V   ++ + G +HISW +VW  + L    EK+ +D   L+D+GIRN  +V FI  + 
Sbjct: 62  QRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIKKLR 121

Query: 159 SK 161
            K
Sbjct: 122 QK 123

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BLAST of MELO3C016998 vs. TrEMBL
Match: E5GCC9_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 4.8e-98
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 1


Query: 1   MKENGDGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60
           MKENGDGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL
Sbjct: 1   MKENGDGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60

Query: 61  ISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHV 120
           ISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHV
Sbjct: 61  ISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHV 120

Query: 121 WANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKC 180
           WANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKC
Sbjct: 121 WANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKC 180

Query: 181 A 182
           A
Sbjct: 181 A 181

[Close]

BLAST of MELO3C016998 vs. TrEMBL
Match: A0A0A0L4F3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652840 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 3.9e-92
Identity = 171/181 (94.48%), Postives = 176/181 (97.24%), Query Frame = 1


Query: 1   MKENGDGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60
           MKE GDGSMKS+ KDEEN VGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL
Sbjct: 1   MKEEGDGSMKSIIKDEENAVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60

Query: 61  ISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHV 120
           ISLELGSAMRISVLKLDGTAIDV+IMNSATLKDLKLAIK+KVNE EQSKMGHRHISWKHV
Sbjct: 61  ISLELGSAMRISVLKLDGTAIDVVIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHV 120

Query: 121 WANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKC 180
           WANFCLAH NEK+LDDSSVLQDFGIRNNSQVRFIPYVMSK+SRTHSRRRKHRFFHGLNKC
Sbjct: 121 WANFCLAHLNEKLLDDSSVLQDFGIRNNSQVRFIPYVMSKSSRTHSRRRKHRFFHGLNKC 180

Query: 181 A 182
           A
Sbjct: 181 A 181

[Close]

BLAST of MELO3C016998 vs. TrEMBL
Match: A0A061FL17_THECC (Ubiquitin-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_034316 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 4.8e-74
Identity = 134/174 (77.01%), Postives = 160/174 (91.95%), Query Frame = 1


Query: 6   DGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLEL 65
           +  M+S +K+E++VVGY++NNVKK +L+STLAALLDDPILADVPK PTLS VDTLISLEL
Sbjct: 220 ESMMESGAKEEQSVVGYNNNNVKKAKLHSTLAALLDDPILADVPKKPTLSDVDTLISLEL 279

Query: 66  GSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHVWANFC 125
           GSAMRIS+LKLDGT+ D+ +MNSAT+KDLKLAIK+KV E EQSKMGHRHISW+HVWANFC
Sbjct: 280 GSAMRISILKLDGTSFDIAVMNSATVKDLKLAIKKKVIEFEQSKMGHRHISWRHVWANFC 339

Query: 126 LAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNK 180
           LAHHNEK+LD+ + LQDFG+RNNSQV+F+PYV+SK S +HS+RRKHRFFHGLNK
Sbjct: 340 LAHHNEKLLDEGAALQDFGVRNNSQVQFVPYVVSKGSGSHSKRRKHRFFHGLNK 393

[Close]

BLAST of MELO3C016998 vs. TrEMBL
Match: A0A061FCZ7_THECC (Ubiquitin-like superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_034316 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 4.8e-74
Identity = 134/174 (77.01%), Postives = 160/174 (91.95%), Query Frame = 1


Query: 6   DGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLEL 65
           +  M+S +K+E++VVGY++NNVKK +L+STLAALLDDPILADVPK PTLS VDTLISLEL
Sbjct: 158 ESMMESGAKEEQSVVGYNNNNVKKAKLHSTLAALLDDPILADVPKKPTLSDVDTLISLEL 217

Query: 66  GSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHVWANFC 125
           GSAMRIS+LKLDGT+ D+ +MNSAT+KDLKLAIK+KV E EQSKMGHRHISW+HVWANFC
Sbjct: 218 GSAMRISILKLDGTSFDIAVMNSATVKDLKLAIKKKVIEFEQSKMGHRHISWRHVWANFC 277

Query: 126 LAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNK 180
           LAHHNEK+LD+ + LQDFG+RNNSQV+F+PYV+SK S +HS+RRKHRFFHGLNK
Sbjct: 278 LAHHNEKLLDEGAALQDFGVRNNSQVQFVPYVVSKGSGSHSKRRKHRFFHGLNK 331

[Close]

BLAST of MELO3C016998 vs. TrEMBL
Match: W9S416_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011652 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 5.5e-70
Identity = 130/175 (74.29%), Postives = 156/175 (89.14%), Query Frame = 1


Query: 9   MKSMSKDEEN--VVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELG 68
           M+S +K+E+N  V GY++NN+KK RLNSTLAALLDDPIL+DVPK P+L  VDTLISLELG
Sbjct: 1   MESSTKEEDNLNVEGYNTNNIKKARLNSTLAALLDDPILSDVPKKPSLPDVDTLISLELG 60

Query: 69  SAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHVWANFCL 128
           SAMR+SVLKLDGT+ DV +MN+A++KDLKLAIKQKVNE EQSKMGHRHISWKHVWANFCL
Sbjct: 61  SAMRVSVLKLDGTSFDVAVMNTASVKDLKLAIKQKVNEMEQSKMGHRHISWKHVWANFCL 120

Query: 129 AHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKCA 182
           ++HNEK+LDD + L+ FG+RNNS+V+F+ YV+SKN   HS+RRKHRFFHGLNK A
Sbjct: 121 SYHNEKLLDDKAALEGFGVRNNSKVQFVHYVVSKNKGGHSKRRKHRFFHGLNKRA 175

[Close]

BLAST of MELO3C016998 vs. TAIR10
Match: AT3G07860.1 (AT3G07860.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 222.6 bits (566), Expect = 1.9e-58
Identity = 107/159 (67.30%), Postives = 129/159 (81.13%), Query Frame = 1


Query: 21  GYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTA 80
           G +    K+ +L S L+ LL DPILADVP+NPTLS V TL+SLE GSAMR+SV+KLDG++
Sbjct: 4   GDYDVETKREKLKSVLSQLLADPILADVPRNPTLSDVVTLVSLEKGSAMRLSVVKLDGSS 63

Query: 81  IDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHVWANFCLAHHNEKILDDSSVL 140
           +DV +MNSATLKDLKL IK+KVNE EQ+ MGHRHISWKHVW+NFCL+ +NEK+LDD++VL
Sbjct: 64  LDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSCNNEKLLDDNAVL 123

Query: 141 QDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNK 180
           QD GIRNNSQV F+PYVM K    HS+R+KHR F  L+K
Sbjct: 124 QDVGIRNNSQVTFMPYVMKKGRGRHSKRKKHRLFRSLHK 162

[Close]

BLAST of MELO3C016998 vs. TAIR10
Match: AT5G25340.1 (AT5G25340.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 80.9 bits (198), Expect = 9.1e-16
Identity = 40/106 (37.74%), Postives = 65/106 (61.32%), Query Frame = 1


Query: 69  MRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHVWANFCLAH 128
           +R+SVLKLDG++ DV ++ SAT+ DLK+AI+   +     K G   ISW HVW +FCL  
Sbjct: 19  IRLSVLKLDGSSFDVYVLTSATVGDLKVAIETAFSHV--PKKGPSKISWSHVWGHFCLCF 78

Query: 129 HNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKN--SRTHSRRRKHR 173
             +K++ D+  + ++G+++  +VRF  +V      S+ +SR+ K +
Sbjct: 79  GGQKLITDTDCIGNYGMKDGDEVRFKNHVSGNAVLSKGYSRKSKQK 122

[Close]

BLAST of MELO3C016998 vs. TAIR10
Match: AT4G32270.1 (AT4G32270.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 74.7 bits (182), Expect = 6.5e-14
Identity = 31/89 (34.83%), Postives = 60/89 (67.42%), Query Frame = 1


Query: 69  MRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHVWANFCLAH 128
           ++++VLKLDG++  + ++ +AT+ +LK+A++   +    S  G   ISW HVW  FCL++
Sbjct: 38  IKLTVLKLDGSSFGIQVLKTATVGELKMAVEAAFSHLPISGPGK--ISWPHVWGQFCLSY 97

Query: 129 HNEKILDDSSVLQDFGIRNNSQVRFIPYV 158
            +++++++S  L +FGI++  Q+RFI ++
Sbjct: 98  EDKRLINESEYLTEFGIKDGDQLRFIRHI 124

[Close]

BLAST of MELO3C016998 vs. NCBI nr
Match: gi|659104343|ref|XP_008452907.1| (PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X1 [Cucumis melo])

HSP 1 Score: 365.2 bits (936), Expect = 6.8e-98
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 1


Query: 1   MKENGDGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60
           MKENGDGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL
Sbjct: 18  MKENGDGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 77

Query: 61  ISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHV 120
           ISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHV
Sbjct: 78  ISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHV 137

Query: 121 WANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKC 180
           WANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKC
Sbjct: 138 WANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKC 197

Query: 181 A 182
           A
Sbjct: 198 A 198

[Close]

BLAST of MELO3C016998 vs. NCBI nr
Match: gi|659104345|ref|XP_008452908.1| (PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 [Cucumis melo])

HSP 1 Score: 365.2 bits (936), Expect = 6.8e-98
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 1


Query: 1   MKENGDGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60
           MKENGDGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL
Sbjct: 1   MKENGDGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60

Query: 61  ISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHV 120
           ISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHV
Sbjct: 61  ISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHV 120

Query: 121 WANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKC 180
           WANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKC
Sbjct: 121 WANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKC 180

Query: 181 A 182
           A
Sbjct: 181 A 181

[Close]

BLAST of MELO3C016998 vs. NCBI nr
Match: gi|449455569|ref|XP_004145525.1| (PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativus])

HSP 1 Score: 345.5 bits (885), Expect = 5.6e-92
Identity = 171/181 (94.48%), Postives = 176/181 (97.24%), Query Frame = 1


Query: 1   MKENGDGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60
           MKE GDGSMKS+ KDEEN VGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL
Sbjct: 1   MKEEGDGSMKSIIKDEENAVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60

Query: 61  ISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHV 120
           ISLELGSAMRISVLKLDGTAIDV+IMNSATLKDLKLAIK+KVNE EQSKMGHRHISWKHV
Sbjct: 61  ISLELGSAMRISVLKLDGTAIDVVIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHV 120

Query: 121 WANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKC 180
           WANFCLAH NEK+LDDSSVLQDFGIRNNSQVRFIPYVMSK+SRTHSRRRKHRFFHGLNKC
Sbjct: 121 WANFCLAHLNEKLLDDSSVLQDFGIRNNSQVRFIPYVMSKSSRTHSRRRKHRFFHGLNKC 180

Query: 181 A 182
           A
Sbjct: 181 A 181

[Close]

BLAST of MELO3C016998 vs. NCBI nr
Match: gi|590594717|ref|XP_007017930.1| (Ubiquitin-like superfamily protein isoform 2 [Theobroma cacao])

HSP 1 Score: 285.4 bits (729), Expect = 6.9e-74
Identity = 134/174 (77.01%), Postives = 160/174 (91.95%), Query Frame = 1


Query: 6   DGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLEL 65
           +  M+S +K+E++VVGY++NNVKK +L+STLAALLDDPILADVPK PTLS VDTLISLEL
Sbjct: 158 ESMMESGAKEEQSVVGYNNNNVKKAKLHSTLAALLDDPILADVPKKPTLSDVDTLISLEL 217

Query: 66  GSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHVWANFC 125
           GSAMRIS+LKLDGT+ D+ +MNSAT+KDLKLAIK+KV E EQSKMGHRHISW+HVWANFC
Sbjct: 218 GSAMRISILKLDGTSFDIAVMNSATVKDLKLAIKKKVIEFEQSKMGHRHISWRHVWANFC 277

Query: 126 LAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNK 180
           LAHHNEK+LD+ + LQDFG+RNNSQV+F+PYV+SK S +HS+RRKHRFFHGLNK
Sbjct: 278 LAHHNEKLLDEGAALQDFGVRNNSQVQFVPYVVSKGSGSHSKRRKHRFFHGLNK 331

[Close]

BLAST of MELO3C016998 vs. NCBI nr
Match: gi|590594714|ref|XP_007017929.1| (Ubiquitin-like superfamily protein isoform 1 [Theobroma cacao])

HSP 1 Score: 285.4 bits (729), Expect = 6.9e-74
Identity = 134/174 (77.01%), Postives = 160/174 (91.95%), Query Frame = 1


Query: 6   DGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLEL 65
           +  M+S +K+E++VVGY++NNVKK +L+STLAALLDDPILADVPK PTLS VDTLISLEL
Sbjct: 220 ESMMESGAKEEQSVVGYNNNNVKKAKLHSTLAALLDDPILADVPKKPTLSDVDTLISLEL 279

Query: 66  GSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHVWANFC 125
           GSAMRIS+LKLDGT+ D+ +MNSAT+KDLKLAIK+KV E EQSKMGHRHISW+HVWANFC
Sbjct: 280 GSAMRISILKLDGTSFDIAVMNSATVKDLKLAIKKKVIEFEQSKMGHRHISWRHVWANFC 339

Query: 126 LAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNK 180
           LAHHNEK+LD+ + LQDFG+RNNSQV+F+PYV+SK S +HS+RRKHRFFHGLNK
Sbjct: 340 LAHHNEKLLDEGAALQDFGVRNNSQVQFVPYVVSKGSGSHSKRRKHRFFHGLNK 393

The following BLAST results are available for this feature:

BLAST of MELO3C016998 vs. Swiss-Prot


Match Name	E-value	Identity	Description
U1125_ARATH	3.4e-57	67.30	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana G...	[more]
SNR25_HUMAN	1.4e-21	40.80	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens GN=SNRNP2...	[more]
SNR25_BOVIN	2.0e-20	39.34	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus GN=SNRNP25 ...	[more]
SNR25_MOUSE	2.0e-20	39.34	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus GN=Snrnp2...	[more]

BLAST of MELO3C016998 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCC9_CUCME	4.8e-98	100.00	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0L4F3_CUCSA	3.9e-92	94.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652840 PE=4 SV=1	[more]
A0A061FL17_THECC	4.8e-74	77.01	Ubiquitin-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_034316 PE...	[more]
A0A061FCZ7_THECC	4.8e-74	77.01	Ubiquitin-like superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_034316 PE...	[more]
W9S416_9ROSA	5.5e-70	74.29	Uncharacterized protein OS=Morus notabilis GN=L484_011652 PE=4 SV=1	[more]

BLAST of MELO3C016998 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G07860.1	1.9e-58	67.30	Ubiquitin-like superfamily protein	[more]
AT5G25340.1	9.1e-16	37.74	Ubiquitin-like superfamily protein	[more]
AT4G32270.1	6.5e-14	34.83	Ubiquitin-like superfamily protein	[more]

BLAST of MELO3C016998 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659104343\|ref\|XP_008452907.1\|	6.8e-98	100.00	PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X1 [Cu...	[more]
gi\|659104345\|ref\|XP_008452908.1\|	6.8e-98	100.00	PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 [Cu...	[more]
gi\|449455569\|ref\|XP_004145525.1\|	5.6e-92	94.48	PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativ...	[more]
gi\|590594717\|ref\|XP_007017930.1\|	6.9e-74	77.01	Ubiquitin-like superfamily protein isoform 2 [Theobroma cacao]	[more]
gi\|590594714\|ref\|XP_007017929.1\|	6.9e-74	77.01	Ubiquitin-like superfamily protein isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006626	protein targeting to mitochondrion
biological_process	GO:0008150	biological_process
biological_process	GO:0008643	carbohydrate transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0044434	chloroplast part
cellular_component	GO:0016020	membrane
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C016998T1	MELO3C016998T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.10.20.90		coord: 63..165 score: 3.1
None	No IPR available	PANTHER	PTHR14942	FAMILY NOT NAMED	coord: 1..179 score: 2.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C016998	Csa4G652840	Cucumber (Chinese Long) v2	cumeB313
MELO3C016998	Cla020978	Watermelon (97103) v1	mewmB528
MELO3C016998	Cla007414	Watermelon (97103) v1	mewmB524
MELO3C016998	ClCG05G015370	Watermelon (Charleston Gray)	mewcgB476
MELO3C016998	Cla97C05G096420	Watermelon (97103) v2	mewmbB481
MELO3C016998	Cla97C05G097910	Watermelon (97103) v2	mewmbB484
MELO3C016998	Bhi09G002428	Wax gourd	mewgoB595
MELO3C016998	CSPI04G26630	Wild cucumber (PI 183967)	cpimeB311
MELO3C016998	Cucsa.271860	Cucumber (Gy14) v1	cgymeB454
MELO3C016998	CmaCh09G004530	Cucurbita maxima (Rimu)	cmameB040
MELO3C016998	CmaCh01G015060	Cucurbita maxima (Rimu)	cmameB446
MELO3C016998	CmaCh09G000800	Cucurbita maxima (Rimu)	cmameB037
MELO3C016998	CmoCh09G004600	Cucurbita moschata (Rifu)	cmomeB029
MELO3C016998	CmoCh09G000790	Cucurbita moschata (Rifu)	cmomeB026
MELO3C016998	Lsi04G017830	Bottle gourd (USVL1VR-Ls)	lsimeB323
MELO3C016998	Cp4.1LG06g00550	Cucurbita pepo (Zucchini)	cpemeB731
MELO3C016998	Cp4.1LG06g03370	Cucurbita pepo (Zucchini)	cpemeB734
MELO3C016998	Cp4.1LG02g04250	Cucurbita pepo (Zucchini)	cpemeB536
MELO3C016998	CsGy4G024970	Cucumber (Gy14) v2	cgybmeB270
MELO3C016998	Carg02878	Silver-seed gourd	carmeB0633
MELO3C016998	Carg08653	Silver-seed gourd	carmeB0107
MELO3C016998	CsaV3_4G036990	Cucumber (Chinese Long) v3	cucmeB316

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None