MELO3C016704 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C016704
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Ring finger protein, putative
Location	chr7 : 2729487 .. 2729972 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGATCCATTACTGACACTTCTATTCCCCATGGAAACCATGGTCCCTGAATCTTCATCTCCTCCAGTCCTCCACTACACCGTAACCCTAGACCTCCGAACCTCCATTATCTTCTCCTTCTCCATAATCCTCTTCTTCCTCTTCCTCTTCCACGTCCTCAGCGGCTTCCTCCAGTGGTTCCTCGACGTCCGGCGAAGCGGAGGAGGCGATGAAGACGTGGAGGCGGCAATGGCGGAGGAGCGGAGGATGAAGCGGGTTTTTTCGGAGAAGTTGCCGTTGCCGCCGACTGTGAAGTTTGGGAGCGAGAAAATGGTGAGGAGGAGGAGTGAGGAGGAATGCGCGATATGTTTGGAGGAGTTTTTGGCCGGAGAAAATTGTCAGGCGTTGCCGGAGTGCAGTCATTTTTTTCATTCGGAGTGTATTGAGGTTTGGTTTAGCAAGAAATTTACGTGCCCTATCTGCCGTAATTGTGTTGCAGCTTAG

mRNA sequence

ATGGGAGATCCATTACTGACACTTCTATTCCCCATGGAAACCATGGTCCCTGAATCTTCATCTCCTCCAGTCCTCCACTACACCGTAACCCTAGACCTCCGAACCTCCATTATCTTCTCCTTCTCCATAATCCTCTTCTTCCTCTTCCTCTTCCACGTCCTCAGCGGCTTCCTCCAGTGGTTCCTCGACGTCCGGCGAAGCGGAGGAGGCGATGAAGACGTGGAGGCGGCAATGGCGGAGGAGCGGAGGATGAAGCGGGTTTTTTCGGAGAAGTTGCCGTTGCCGCCGACTGTGAAGTTTGGGAGCGAGAAAATGGTGAGGAGGAGGAGTGAGGAGGAATGCGCGATATGTTTGGAGGAGTTTTTGGCCGGAGAAAATTGTCAGGCGTTGCCGGAGTGCAGTCATTTTTTTCATTCGGAGTGTATTGAGGTTTGGTTTAGCAAGAAATTTACGTGCCCTATCTGCCGTAATTGTGTTGCAGCTTAG

Coding sequence (CDS)

ATGGGAGATCCATTACTGACACTTCTATTCCCCATGGAAACCATGGTCCCTGAATCTTCATCTCCTCCAGTCCTCCACTACACCGTAACCCTAGACCTCCGAACCTCCATTATCTTCTCCTTCTCCATAATCCTCTTCTTCCTCTTCCTCTTCCACGTCCTCAGCGGCTTCCTCCAGTGGTTCCTCGACGTCCGGCGAAGCGGAGGAGGCGATGAAGACGTGGAGGCGGCAATGGCGGAGGAGCGGAGGATGAAGCGGGTTTTTTCGGAGAAGTTGCCGTTGCCGCCGACTGTGAAGTTTGGGAGCGAGAAAATGGTGAGGAGGAGGAGTGAGGAGGAATGCGCGATATGTTTGGAGGAGTTTTTGGCCGGAGAAAATTGTCAGGCGTTGCCGGAGTGCAGTCATTTTTTTCATTCGGAGTGTATTGAGGTTTGGTTTAGCAAGAAATTTACGTGCCCTATCTGCCGTAATTGTGTTGCAGCTTAG

Protein sequence

MGDPLLTLLFPMETMVPESSSPPVLHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRSGGGDEDVEAAMAEERRMKRVFSEKLPLPPTVKFGSEKMVRRRSEEECAICLEEFLAGENCQALPECSHFFHSECIEVWFSKKFTCPICRNCVAA*

Homology

[Close]

BLAST of MELO3C016704 vs. Swiss-Prot
Match: ATL3_ARATH (RING-H2 finger protein ATL3 OS=Arabidopsis thaliana GN=ATL3 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.3e-12
Identity = 48/150 (32.00%), Postives = 66/150 (44.00%), Query Frame = 1


Query: 35  TSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRSGGGDEDVEAAMAEE----------RRM 94
           T+II  F  +LF L L H+ +    W +D  +     +  E    E+          RR 
Sbjct: 27  TAIIVLFMAVLFVLIL-HLYAKLYWWRIDQLQQQQQQQQQEQEQEEDQSSIAPPVVTRRQ 86

Query: 95  KRVF---------------SEKLPLPPTVKFGSEKMVRRRSEEECAICLEEFLAGENCQA 154
           +R F               S +L   P V F  +     +   EC+ICL E + G+  + 
Sbjct: 87  RRRFIFVPGQDALSNTGLTSFELSSLPIVFFRQDSC---KDGLECSICLSELVKGDKARL 146

Query: 155 LPECSHFFHSECIEVWFSKKFTCPICRNCV 160
           LP+C+H FH ECI++WF    TCPICRN V
Sbjct: 147 LPKCNHSFHVECIDMWFQSHSTCPICRNTV 172

[Close]

BLAST of MELO3C016704 vs. Swiss-Prot
Match: ATL10_ARATH (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana GN=ATL10 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-11
Identity = 31/75 (41.33%), Postives = 43/75 (57.33%), Query Frame = 1


Query: 85  KRVFSEKLPLPPTVKFGSEKMVRRRSEEECAICLEEFLAGENCQALPECSHFFHSECIEV 144
           K +  + L + P V +  E M     +EEC ICL +F++GE  + LP+C+H FH  CI+ 
Sbjct: 107 KGIKKKALRMFPVVSYSPE-MNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDK 166

Query: 145 WFSKKFTCPICRNCV 160
           W  +  TCP CRNC+
Sbjct: 167 WLQQHLTCPKCRNCL 180

[Close]

BLAST of MELO3C016704 vs. Swiss-Prot
Match: ATL77_ARATH (RING-H2 finger protein ATL77 OS=Arabidopsis thaliana GN=ATL77 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.7e-11
Identity = 25/48 (52.08%), Postives = 33/48 (68.75%), Query Frame = 1


Query: 112 EECAICLEEFLAGENCQALPECSHFFHSECIEVWFSKKFTCPICRNCV 160
           EEC ICL +F+AGE  + LP+C+H FH  CI+ W ++  TCP CR+C+
Sbjct: 128 EECVICLSDFVAGEQLRVLPKCNHGFHLRCIDKWLTQHMTCPKCRHCL 175

[Close]

BLAST of MELO3C016704 vs. Swiss-Prot
Match: ATL39_ARATH (RING-H2 finger protein ATL39 OS=Arabidopsis thaliana GN=ATL39 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.4e-11
Identity = 37/122 (30.33%), Postives = 66/122 (54.10%), Query Frame = 1


Query: 36  SIIFSFSIILFFLFLFHVLSGFLQWFLDVRRSGGGDEDVEAAMAEERRMKRVFSEKLPLP 95
           +I+F+F+ I F  F  ++++ +++   + R +  GD + EA M+  R  + + +E +   
Sbjct: 10  TIVFAFASIGFIAF--YIINYYIRRCRN-RAAAAGDIE-EARMSPRRPPRGLDAEAIKSF 69

Query: 96  PTVKFGSEKMVRRR-SEEECAICLEEFLAGENCQALPECSHFFHSECIEVWFSKKFTCPI 155
           P+  +   + +     E EC +CL EF   E  + +P C H FH++C+++W S   TCPI
Sbjct: 70  PSFVYTEARGIEPGIGELECVVCLNEFKDDETLRLVPPCVHVFHADCVDIWLSHSSTCPI 127

Query: 156 CR 157
           CR
Sbjct: 130 CR 127

[Close]

BLAST of MELO3C016704 vs. Swiss-Prot
Match: ATL9_ARATH (E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana GN=ATL9 PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.4e-11
Identity = 33/89 (37.08%), Postives = 49/89 (55.06%), Query Frame = 1


Query: 71  DEDVEAAMAEERRM--KRVFSEKLPLPPTVKFGSEKMVR-RRSEEECAICLEEFLAGENC 130
           D D E+ +   RR+  + + +E +   PT  +   K VR  +   ECA+CL EF   E  
Sbjct: 89  DADAESQVVRIRRLTARGLDAEAIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETL 148

Query: 131 QALPECSHFFHSECIEVWFSKKFTCPICR 157
           + +P C H FH++C++VW S+  TCP+CR
Sbjct: 149 RLMPPCCHVFHADCVDVWLSEHSTCPLCR 177

[Close]

BLAST of MELO3C016704 vs. TrEMBL
Match: A0A0A0L062_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G637730 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 9.5e-82
Identity = 149/161 (92.55%), Postives = 156/161 (96.89%), Query Frame = 1


Query: 1   MGDPLLTLLFPMETMVPESSSPPVLHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW 60
           MGDPLLTLLFPMETMVPES SPPVLHYTVTLD+RTSIIFSFSIILFFLFLFHVLSGFLQW
Sbjct: 1   MGDPLLTLLFPMETMVPESPSPPVLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQW 60

Query: 61  FLDVRRSGGGDEDVEAAMAEERRMKRVFSEKLPLPPTVKFGSEKMVRRRSEEECAICLEE 120
           FLDVRR+GGG EDVEAAMAEERR+KR  +EKLPLPPTV+FGSEKMVRRRSEEECAICLEE
Sbjct: 61  FLDVRRNGGGGEDVEAAMAEERRLKR--AEKLPLPPTVRFGSEKMVRRRSEEECAICLEE 120

Query: 121 FLAGENCQALPECSHFFHSECIEVWFSKKFTCPICRNCVAA 162
           FL GENCQALPEC+HFFHSECI+VWFSKKFTCPICRNCVAA
Sbjct: 121 FLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA 159

[Close]

BLAST of MELO3C016704 vs. TrEMBL
Match: A0A0B2QXS8_GLYSO (Putative RING-H2 finger protein ATL19 OS=Glycine soja GN=glysoja_050305 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.9e-16
Identity = 43/85 (50.59%), Postives = 53/85 (62.35%), Query Frame = 1


Query: 75  EAAMAEERRMKRVFSEKLPLPPTVKFGSEKMVRRRSEEECAICLEEFLAGENCQALPECS 134
           E A  E+R  +   S+KLP  P V +G    V R   EECAIC+EEF   + CQ  PEC 
Sbjct: 105 EGAFNEKRGQRLRASKKLP--PLVNYGKHG-VTRSCGEECAICMEEFKVSQLCQVFPECK 164

Query: 135 HFFHSECIEVWFSKKFTCPICRNCV 160
           H FHS+CI+ W  KK TCPICR+C+
Sbjct: 165 HIFHSDCIDHWLQKKLTCPICRSCI 186

[Close]

BLAST of MELO3C016704 vs. TrEMBL
Match: K7M2C6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G277600 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.9e-16
Identity = 43/85 (50.59%), Postives = 53/85 (62.35%), Query Frame = 1


Query: 75  EAAMAEERRMKRVFSEKLPLPPTVKFGSEKMVRRRSEEECAICLEEFLAGENCQALPECS 134
           E A  E+R  +   S+KLP  P V +G    V R   EECAIC+EEF   + CQ  PEC 
Sbjct: 105 EGAFNEKRGQRLRASKKLP--PLVNYGKHG-VTRSCGEECAICMEEFKVSQLCQVFPECK 164

Query: 135 HFFHSECIEVWFSKKFTCPICRNCV 160
           H FHS+CI+ W  KK TCPICR+C+
Sbjct: 165 HIFHSDCIDHWLQKKLTCPICRSCI 186

[Close]

BLAST of MELO3C016704 vs. TrEMBL
Match: K7LWD4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G223700 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.7e-14
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = 1


Query: 81  ERRMKRVFSEKLPLPPTVKFGSEKMVRRRSEEECAICLEEFLAGENCQALPECSHFFHSE 140
           E+R +R+ + K  LPP V +G   + R  S  ECAICLEEF  G+ CQ  PEC H FHS+
Sbjct: 112 EKRGQRLRASK-KLPPLVNYGMHGVTR--SCGECAICLEEFEVGQLCQVFPECKHIFHSD 171

Query: 141 CIEVWFSKKFTCPICRNCV 160
           CI+ W  KK TCPICR+ +
Sbjct: 172 CIDHWLQKKLTCPICRSSI 187

[Close]

BLAST of MELO3C016704 vs. TrEMBL
Match: A0A072VBB9_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_2g079320 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.8e-14
Identity = 47/115 (40.87%), Postives = 61/115 (53.04%), Query Frame = 1


Query: 50  LFHVL--SGFLQWFLDVRRSGGGDEDVEAAMAEERRMKRVFSEKLPLPPTVKF---GSEK 109
           +FH L  S    W +        +E+ E    + R  K   S+KLP  P + +   G   
Sbjct: 96  IFHALVFSNLQDWTMVAT----SEEEQEENYDKNRGQKLRDSKKLP--PLMNYDGIGKHG 155

Query: 110 MVRRRSEEECAICLEEFLAGENCQALPECSHFFHSECIEVWFSKKFTCPICRNCV 160
              RRS  ECAICLE+F  G+ CQ  P C H FHS+CI+ W  +K TCPICRNC+
Sbjct: 156 YELRRSCNECAICLEDFQRGQLCQVFPVCKHIFHSDCIDHWLQRKLTCPICRNCL 204

[Close]

BLAST of MELO3C016704 vs. TAIR10
Match: AT1G72310.1 (AT1G72310.1 RING/U-box superfamily protein)

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-13
Identity = 48/150 (32.00%), Postives = 66/150 (44.00%), Query Frame = 1


Query: 35  TSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRSGGGDEDVEAAMAEE----------RRM 94
           T+II  F  +LF L L H+ +    W +D  +     +  E    E+          RR 
Sbjct: 27  TAIIVLFMAVLFVLIL-HLYAKLYWWRIDQLQQQQQQQQQEQEQEEDQSSIAPPVVTRRQ 86

Query: 95  KRVF---------------SEKLPLPPTVKFGSEKMVRRRSEEECAICLEEFLAGENCQA 154
           +R F               S +L   P V F  +     +   EC+ICL E + G+  + 
Sbjct: 87  RRRFIFVPGQDALSNTGLTSFELSSLPIVFFRQDSC---KDGLECSICLSELVKGDKARL 146

Query: 155 LPECSHFFHSECIEVWFSKKFTCPICRNCV 160
           LP+C+H FH ECI++WF    TCPICRN V
Sbjct: 147 LPKCNHSFHVECIDMWFQSHSTCPICRNTV 172

[Close]

BLAST of MELO3C016704 vs. TAIR10
Match: AT1G49220.1 (AT1G49220.1 RING/U-box superfamily protein)

HSP 1 Score: 70.9 bits (172), Expect = 8.4e-13
Identity = 31/75 (41.33%), Postives = 43/75 (57.33%), Query Frame = 1


Query: 85  KRVFSEKLPLPPTVKFGSEKMVRRRSEEECAICLEEFLAGENCQALPECSHFFHSECIEV 144
           K +  + L + P V +  E M     +EEC ICL +F++GE  + LP+C+H FH  CI+ 
Sbjct: 107 KGIKKKALRMFPVVSYSPE-MNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDK 166

Query: 145 WFSKKFTCPICRNCV 160
           W  +  TCP CRNC+
Sbjct: 167 WLQQHLTCPKCRNCL 180

[Close]

BLAST of MELO3C016704 vs. TAIR10
Match: AT3G18773.1 (AT3G18773.1 RING/U-box superfamily protein)

HSP 1 Score: 68.9 bits (167), Expect = 3.2e-12
Identity = 25/48 (52.08%), Postives = 33/48 (68.75%), Query Frame = 1


Query: 112 EECAICLEEFLAGENCQALPECSHFFHSECIEVWFSKKFTCPICRNCV 160
           EEC ICL +F+AGE  + LP+C+H FH  CI+ W ++  TCP CR+C+
Sbjct: 128 EECVICLSDFVAGEQLRVLPKCNHGFHLRCIDKWLTQHMTCPKCRHCL 175

[Close]

BLAST of MELO3C016704 vs. TAIR10
Match: AT4G17920.1 (AT4G17920.1 RING/U-box superfamily protein)

HSP 1 Score: 68.6 bits (166), Expect = 4.2e-12
Identity = 54/160 (33.75%), Postives = 71/160 (44.38%), Query Frame = 1


Query: 12  METMVPE--SSSPPVLHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQWFLDV----- 71
           M T++P   +  PP  HY VT  L  ++I +  +++FF   F  L  F + FLD      
Sbjct: 1   MSTIIPSPLAPQPPQQHY-VTPPL--TVILTVILLVFFFIGFFTLY-FCKCFLDTMVQAW 60

Query: 72  RRSGGGD-------EDVEAAMAEERRMKRVFSEKLPLPPTVKFGSEKMVRRRSEE-ECAI 131
           R   GGD       +  EA         R+ +      PT  + S K +R      ECAI
Sbjct: 61  RLHHGGDTVSDNPLQQPEAPPVNPGLELRIINSF----PTFPYSSVKDLREEKYGLECAI 120

Query: 132 CLEEFLAGENCQALPECSHFFHSECIEVWFSKKFTCPICR 157
           CL EF      + L  C H FH ECI++WF    TCP+CR
Sbjct: 121 CLLEFDGDHVLRLLTTCYHVFHQECIDLWFESHRTCPVCR 152

[Close]

BLAST of MELO3C016704 vs. TAIR10
Match: AT2G35000.1 (AT2G35000.1 RING/U-box superfamily protein)

HSP 1 Score: 68.6 bits (166), Expect = 4.2e-12
Identity = 33/89 (37.08%), Postives = 49/89 (55.06%), Query Frame = 1


Query: 71  DEDVEAAMAEERRM--KRVFSEKLPLPPTVKFGSEKMVR-RRSEEECAICLEEFLAGENC 130
           D D E+ +   RR+  + + +E +   PT  +   K VR  +   ECA+CL EF   E  
Sbjct: 89  DADAESQVVRIRRLTARGLDAEAIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETL 148

Query: 131 QALPECSHFFHSECIEVWFSKKFTCPICR 157
           + +P C H FH++C++VW S+  TCP+CR
Sbjct: 149 RLMPPCCHVFHADCVDVWLSEHSTCPLCR 177

[Close]

BLAST of MELO3C016704 vs. NCBI nr
Match: gi|659105301|ref|XP_008453063.1| (PREDICTED: RING-H2 finger protein ATL39-like [Cucumis melo])

HSP 1 Score: 323.9 bits (829), Expect = 1.6e-85
Identity = 158/161 (98.14%), Postives = 159/161 (98.76%), Query Frame = 1


Query: 1   MGDPLLTLLFPMETMVPESSSPPVLHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW 60
           MGDPLLTLLFPMETMVPESSSPPVLHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW
Sbjct: 1   MGDPLLTLLFPMETMVPESSSPPVLHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW 60

Query: 61  FLDVRRSGGGDEDVEAAMAEERRMKRVFSEKLPLPPTVKFGSEKMVRRRSEEECAICLEE 120
           FLDVRRSGGGDEDVEAAMAEERRMKR  +EKLPLPPTVKFGSEKMVRRRSEEECAICLEE
Sbjct: 61  FLDVRRSGGGDEDVEAAMAEERRMKR--AEKLPLPPTVKFGSEKMVRRRSEEECAICLEE 120

Query: 121 FLAGENCQALPECSHFFHSECIEVWFSKKFTCPICRNCVAA 162
           FLAGENCQALPECSHFFHSECIEVWFSKKFTCPICRNCVAA
Sbjct: 121 FLAGENCQALPECSHFFHSECIEVWFSKKFTCPICRNCVAA 159

[Close]

BLAST of MELO3C016704 vs. NCBI nr
Match: gi|700199975|gb|KGN55133.1| (hypothetical protein Csa_4G637730 [Cucumis sativus])

HSP 1 Score: 310.8 bits (795), Expect = 1.4e-81
Identity = 149/161 (92.55%), Postives = 156/161 (96.89%), Query Frame = 1


Query: 1   MGDPLLTLLFPMETMVPESSSPPVLHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW 60
           MGDPLLTLLFPMETMVPES SPPVLHYTVTLD+RTSIIFSFSIILFFLFLFHVLSGFLQW
Sbjct: 1   MGDPLLTLLFPMETMVPESPSPPVLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQW 60

Query: 61  FLDVRRSGGGDEDVEAAMAEERRMKRVFSEKLPLPPTVKFGSEKMVRRRSEEECAICLEE 120
           FLDVRR+GGG EDVEAAMAEERR+KR  +EKLPLPPTV+FGSEKMVRRRSEEECAICLEE
Sbjct: 61  FLDVRRNGGGGEDVEAAMAEERRLKR--AEKLPLPPTVRFGSEKMVRRRSEEECAICLEE 120

Query: 121 FLAGENCQALPECSHFFHSECIEVWFSKKFTCPICRNCVAA 162
           FL GENCQALPEC+HFFHSECI+VWFSKKFTCPICRNCVAA
Sbjct: 121 FLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA 159

[Close]

BLAST of MELO3C016704 vs. NCBI nr
Match: gi|571505119|ref|XP_006595439.1| (PREDICTED: putative RING-H2 finger protein ATL19 [Glycine max])

HSP 1 Score: 92.0 bits (227), Expect = 1.0e-15
Identity = 43/85 (50.59%), Postives = 53/85 (62.35%), Query Frame = 1


Query: 75  EAAMAEERRMKRVFSEKLPLPPTVKFGSEKMVRRRSEEECAICLEEFLAGENCQALPECS 134
           E A  E+R  +   S+KLP  P V +G    V R   EECAIC+EEF   + CQ  PEC 
Sbjct: 105 EGAFNEKRGQRLRASKKLP--PLVNYGKHG-VTRSCGEECAICMEEFKVSQLCQVFPECK 164

Query: 135 HFFHSECIEVWFSKKFTCPICRNCV 160
           H FHS+CI+ W  KK TCPICR+C+
Sbjct: 165 HIFHSDCIDHWLQKKLTCPICRSCI 186

[Close]

BLAST of MELO3C016704 vs. NCBI nr
Match: gi|734385995|gb|KHN24809.1| (Putative RING-H2 finger protein ATL19 [Glycine soja])

HSP 1 Score: 92.0 bits (227), Expect = 1.0e-15
Identity = 43/85 (50.59%), Postives = 53/85 (62.35%), Query Frame = 1


Query: 75  EAAMAEERRMKRVFSEKLPLPPTVKFGSEKMVRRRSEEECAICLEEFLAGENCQALPECS 134
           E A  E+R  +   S+KLP  P V +G    V R   EECAIC+EEF   + CQ  PEC 
Sbjct: 105 EGAFNEKRGQRLRASKKLP--PLVNYGKHG-VTRSCGEECAICMEEFKVSQLCQVFPECK 164

Query: 135 HFFHSECIEVWFSKKFTCPICRNCV 160
           H FHS+CI+ W  KK TCPICR+C+
Sbjct: 165 HIFHSDCIDHWLQKKLTCPICRSCI 186

[Close]

BLAST of MELO3C016704 vs. NCBI nr
Match: gi|571495627|ref|XP_006593299.1| (PREDICTED: putative RING-H2 finger protein ATL19 [Glycine max])

HSP 1 Score: 87.4 bits (215), Expect = 2.5e-14
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = 1


Query: 81  ERRMKRVFSEKLPLPPTVKFGSEKMVRRRSEEECAICLEEFLAGENCQALPECSHFFHSE 140
           E+R +R+ + K  LPP V +G   + R  S  ECAICLEEF  G+ CQ  PEC H FHS+
Sbjct: 112 EKRGQRLRASK-KLPPLVNYGMHGVTR--SCGECAICLEEFEVGQLCQVFPECKHIFHSD 171

Query: 141 CIEVWFSKKFTCPICRNCV 160
           CI+ W  KK TCPICR+ +
Sbjct: 172 CIDHWLQKKLTCPICRSSI 187

The following BLAST results are available for this feature:

BLAST of MELO3C016704 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATL3_ARATH	2.3e-12	32.00	RING-H2 finger protein ATL3 OS=Arabidopsis thaliana GN=ATL3 PE=2 SV=1	[more]
ATL10_ARATH	1.5e-11	41.33	RING-H2 finger protein ATL10 OS=Arabidopsis thaliana GN=ATL10 PE=2 SV=1	[more]
ATL77_ARATH	5.7e-11	52.08	RING-H2 finger protein ATL77 OS=Arabidopsis thaliana GN=ATL77 PE=2 SV=1	[more]
ATL39_ARATH	7.4e-11	30.33	RING-H2 finger protein ATL39 OS=Arabidopsis thaliana GN=ATL39 PE=2 SV=1	[more]
ATL9_ARATH	7.4e-11	37.08	E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana GN=ATL9 PE=1 SV=1	[more]

BLAST of MELO3C016704 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L062_CUCSA	9.5e-82	92.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G637730 PE=4 SV=1	[more]
A0A0B2QXS8_GLYSO	6.9e-16	50.59	Putative RING-H2 finger protein ATL19 OS=Glycine soja GN=glysoja_050305 PE=4 SV=...	[more]
K7M2C6_SOYBN	6.9e-16	50.59	Uncharacterized protein OS=Glycine max GN=GLYMA_13G277600 PE=4 SV=1	[more]
K7LWD4_SOYBN	1.7e-14	51.90	Uncharacterized protein OS=Glycine max GN=GLYMA_12G223700 PE=4 SV=1	[more]
A0A072VBB9_MEDTR	3.8e-14	40.87	Uncharacterized protein OS=Medicago truncatula GN=MTR_2g079320 PE=4 SV=1	[more]

BLAST of MELO3C016704 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G72310.1	1.3e-13	32.00	RING/U-box superfamily protein	[more]
AT1G49220.1	8.4e-13	41.33	RING/U-box superfamily protein	[more]
AT3G18773.1	3.2e-12	52.08	RING/U-box superfamily protein	[more]
AT4G17920.1	4.2e-12	33.75	RING/U-box superfamily protein	[more]
AT2G35000.1	4.2e-12	37.08	RING/U-box superfamily protein	[more]

BLAST of MELO3C016704 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659105301\|ref\|XP_008453063.1\|	1.6e-85	98.14	PREDICTED: RING-H2 finger protein ATL39-like [Cucumis melo]	[more]
gi\|700199975\|gb\|KGN55133.1\|	1.4e-81	92.55	hypothetical protein Csa_4G637730 [Cucumis sativus]	[more]
gi\|571505119\|ref\|XP_006595439.1\|	1.0e-15	50.59	PREDICTED: putative RING-H2 finger protein ATL19 [Glycine max]	[more]
gi\|734385995\|gb\|KHN24809.1\|	1.0e-15	50.59	Putative RING-H2 finger protein ATL19 [Glycine soja]	[more]
gi\|571495627\|ref\|XP_006593299.1\|	2.5e-14	51.90	PREDICTED: putative RING-H2 finger protein ATL19 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C016704T1	MELO3C016704T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 113..156 score: 1.4
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 114..155 score: 1.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 114..156 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 110..157 score: 2.8
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 37..161 score: 5.2
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 109..159 score: 9.34

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C016704	Csa4G637730	Cucumber (Chinese Long) v2	cumeB313
MELO3C016704	Cla023389	Watermelon (97103) v1	mewmB546
MELO3C016704	CSPI04G23540	Wild cucumber (PI 183967)	cpimeB311
MELO3C016704	Cucsa.123190	Cucumber (Gy14) v1	cgymeB189
MELO3C016704	CmaCh09G008700	Cucurbita maxima (Rimu)	cmameB041
MELO3C016704	CmoCh09G008580	Cucurbita moschata (Rifu)	cmomeB030
MELO3C016704	Cp4.1LG06g07020	Cucurbita pepo (Zucchini)	cpemeB735
MELO3C016704	Carg17104	Silver-seed gourd	carmeB0175
MELO3C016704	CsaV3_4G033750	Cucumber (Chinese Long) v3	cucmeB316

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C016704	Silver-seed gourd	carmeB0313
MELO3C016704	Watermelon (97103) v2	mewmbB474
MELO3C016704	Wax gourd	mewgoB595
MELO3C016704	Cucurbita maxima (Rimu)	cmameB436
MELO3C016704	Cucurbita moschata (Rifu)	cmomeB427
MELO3C016704	Watermelon (Charleston Gray)	mewcgB464
MELO3C016704	Watermelon (Charleston Gray)	mewcgB480
MELO3C016704	Cucurbita pepo (Zucchini)	cpemeB543
MELO3C016704	Bottle gourd (USVL1VR-Ls)	lsimeB317
MELO3C016704	Cucumber (Gy14) v2	cgybmeB270