MELO3C016702 (gene) Melon (DHL92) v3.5.1

NameMELO3C016702
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTranslation initiation factor IF-1
Locationchr7 : 2730216 .. 2733562 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAGCACAAATCTCCTCCAATTCCCTCTCCTTCAATCCCACTTCCGCCCACCGTCCACTCTTCTTTTTCCCCCCGTCAAATCCCATCTCTCCGTTGTCTCAATCTCTTTCCCCACCTCCCAATTCCTCCATACCCCTTCCCACGCTCCTCCAGGCTTCGCTCTCATGGCCAAGTCTCCAAAAAACGACACCTCCGAGCAGAAATTGAGCCATGAAGGATCCGTCGTCGAGTCTCTTCCCAATGGGATGTTCAGGGTTCGATTGGATAATGAAGACCTCATTTTAGGCTACATATCCGGTAAGATTCGGAAGAATTTTGTTCGTATTTTACCTGGTGATAGGGTTAGGGTTGAAGTTAGTCGTTATGATTCTACCAAAGGTCGAATTGTTTATAGACTTCGAAGTAGTGGTAAAGACTCATCTTCATGA

mRNA sequence

ATGTCGAGCACAAATCTCCTCCAATTCCCTCTCCTTCAATCCCACTTCCGCCCACCGTCCACTCTTCTTTTTCCCCCCGTCAAATCCCATCTCTCCGTTGTCTCAATCTCTTTCCCCACCTCCCAATTCCTCCATACCCCTTCCCACGCTCCTCCAGGCTTCGCTCTCATGGCCAAGTCTCCAAAAAACGACACCTCCGAGCAGAAATTGAGCCATGAAGGATCCGTCGTCGAGTCTCTTCCCAATGGGATGTTCAGGGTTCGATTGGATAATGAAGACCTCATTTTAGGCTACATATCCGGTAAGATTCGGAAGAATTTTGTTCGTATTTTACCTGGTGATAGGGTTAGGGTTGAAGTTAGTCGTTATGATTCTACCAAAGGTCGAATTGTTTATAGACTTCGAAGTAGTGGTAAAGACTCATCTTCATGA

Coding sequence (CDS)

ATGTCGAGCACAAATCTCCTCCAATTCCCTCTCCTTCAATCCCACTTCCGCCCACCGTCCACTCTTCTTTTTCCCCCCGTCAAATCCCATCTCTCCGTTGTCTCAATCTCTTTCCCCACCTCCCAATTCCTCCATACCCCTTCCCACGCTCCTCCAGGCTTCGCTCTCATGGCCAAGTCTCCAAAAAACGACACCTCCGAGCAGAAATTGAGCCATGAAGGATCCGTCGTCGAGTCTCTTCCCAATGGGATGTTCAGGGTTCGATTGGATAATGAAGACCTCATTTTAGGCTACATATCCGGTAAGATTCGGAAGAATTTTGTTCGTATTTTACCTGGTGATAGGGTTAGGGTTGAAGTTAGTCGTTATGATTCTACCAAAGGTCGAATTGTTTATAGACTTCGAAGTAGTGGTAAAGACTCATCTTCATGA

Protein sequence

MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSGKDSSS*
BLAST of MELO3C016702 vs. Swiss-Prot
Match: IF1C_SOYBN (Translation initiation factor IF-1, chloroplastic OS=Glycine max GN=infA PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.7e-11
Identity = 42/64 (65.62%), Postives = 42/64 (65.62%), Query Frame = 1

Query: 40  TSQFLHTPSHAPPGFALMAKSP-KNDTS-EQKLSHEGSVVESLPNGMFRVRLDNEDLILG 99
           T  FL  P   P   AL A S  K D S EQK  HEG ++ESLPNGMFRVRLDNEDLILG
Sbjct: 36  TLSFLAPPPLLPAAPALSAASAAKPDKSGEQKWVHEGLIMESLPNGMFRVRLDNEDLILG 95

Query: 100 YISG 102
           YISG
Sbjct: 96  YISG 99

BLAST of MELO3C016702 vs. Swiss-Prot
Match: IF1C_ASACA (Translation initiation factor IF-1, chloroplastic OS=Asarum canadense GN=infA PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.3e-10
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 1

Query: 67  EQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISG 102
           EQKL HEG ++ESLPNGMFRVRLDNEDLILGY+SG
Sbjct: 3   EQKLIHEGLIIESLPNGMFRVRLDNEDLILGYVSG 37

BLAST of MELO3C016702 vs. Swiss-Prot
Match: IF1C_DIOEL (Translation initiation factor IF-1, chloroplastic OS=Dioscorea elephantipes GN=infA PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.3e-10
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 1

Query: 67  EQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISG 102
           EQKL HEG ++ESLPNGMFRVRLDNEDLILGY+SG
Sbjct: 3   EQKLIHEGVIIESLPNGMFRVRLDNEDLILGYVSG 37

BLAST of MELO3C016702 vs. Swiss-Prot
Match: IF1C_PHAAO (Translation initiation factor IF-1, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=infA PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-10
Identity = 31/35 (88.57%), Postives = 30/35 (85.71%), Query Frame = 1

Query: 67  EQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISG 102
           EQKL HEG + ESLPNGMFRVRLDNEDLILGYISG
Sbjct: 3   EQKLIHEGLITESLPNGMFRVRLDNEDLILGYISG 37

BLAST of MELO3C016702 vs. Swiss-Prot
Match: IF1C_LIRTU (Translation initiation factor IF-1, chloroplastic OS=Liriodendron tulipifera GN=infA PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.0e-10
Identity = 30/35 (85.71%), Postives = 30/35 (85.71%), Query Frame = 1

Query: 67  EQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISG 102
           EQKL HEG + ESLPNGMFRVRLDNEDLILGY+SG
Sbjct: 3   EQKLIHEGLITESLPNGMFRVRLDNEDLILGYVSG 37

BLAST of MELO3C016702 vs. TrEMBL
Match: A0A0A0L4Q7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G637710 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 8.8e-46
Identity = 94/101 (93.07%), Postives = 96/101 (95.05%), Query Frame = 1

Query: 1   MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKS 60
           MSSTNLLQFPLLQSHFRPPSTLLFP VKSHLS+ SISFPTSQFLHTPSHA P F LMAKS
Sbjct: 1   MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFVLMAKS 60

Query: 61  PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISG 102
           PKNDTSEQKLSHEGSVVESLPNGMFRVRLDN+DLILGYISG
Sbjct: 61  PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISG 101

BLAST of MELO3C016702 vs. TrEMBL
Match: G7LDQ8_MEDTR (Translation initiation factor IF-1 OS=Medicago truncatula GN=MTR_8g061130 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-11
Identity = 50/92 (54.35%), Postives = 55/92 (59.78%), Query Frame = 1

Query: 15  HFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSH---APPG-FALMAKSPKND-TSEQK 74
           H R PST +     S     ++ F T  FL  PS     PP  F + AKS   D  SEQK
Sbjct: 15  HHRQPSTTITTHSFS-FHTPTLHFRTPSFLRPPSPLNLTPPSIFTVAAKSSTPDKASEQK 74

Query: 75  LSHEGSVVESLPNGMFRVRLDNEDLILGYISG 102
             HEG + ESLPNGMFRVRLDNEDLILGYISG
Sbjct: 75  WVHEGLITESLPNGMFRVRLDNEDLILGYISG 105

BLAST of MELO3C016702 vs. TrEMBL
Match: A0A067LED1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00251 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-11
Identity = 46/89 (51.69%), Postives = 56/89 (62.92%), Query Frame = 1

Query: 14  SHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKSPK-NDTSEQKLSH 73
           S  +PP+TL   P    LS   I      FL   +   P F+++ ++ K N   EQK +H
Sbjct: 20  SSTKPPTTLY--PRTVFLSQGLIKTTPLNFLKIGTVPAPRFSVLIQASKVNPPGEQKWTH 79

Query: 74  EGSVVESLPNGMFRVRLDNEDLILGYISG 102
           EGSV ESLPNGMFRVRLDNEDLI+GYISG
Sbjct: 80  EGSVTESLPNGMFRVRLDNEDLIIGYISG 106

BLAST of MELO3C016702 vs. TrEMBL
Match: A0A0L9TRQ0_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g272200 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.2e-11
Identity = 48/99 (48.48%), Postives = 55/99 (55.56%), Query Frame = 1

Query: 4   TNLLQFPLLQSHFRPP-STLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKSPK 63
           T +L  PL  S FR   S L  PP    LS          FL  P   P   A+   +  
Sbjct: 12  TPILHHPLPSSPFRTNFSPLTLPPFHRTLS----------FLPPPPLLPEVPAISTAAKA 71

Query: 64  NDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISG 102
           + + EQK  HEG ++ESLPNGMFRVRLDNEDLILGYISG
Sbjct: 72  DKSGEQKWVHEGLIMESLPNGMFRVRLDNEDLILGYISG 100

BLAST of MELO3C016702 vs. TrEMBL
Match: A0A0S3R775_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G452400 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.2e-11
Identity = 48/99 (48.48%), Postives = 55/99 (55.56%), Query Frame = 1

Query: 4   TNLLQFPLLQSHFRPP-STLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKSPK 63
           T +L  PL  S FR   S L  PP    LS          FL  P   P   A+   +  
Sbjct: 12  TPILHHPLPSSPFRTNFSPLTLPPFHRTLS----------FLPPPPLLPEVPAISTAAKA 71

Query: 64  NDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISG 102
           + + EQK  HEG ++ESLPNGMFRVRLDNEDLILGYISG
Sbjct: 72  DKSGEQKWVHEGLIMESLPNGMFRVRLDNEDLILGYISG 100

BLAST of MELO3C016702 vs. NCBI nr
Match: gi|659103075|ref|XP_008452461.1| (PREDICTED: translation initiation factor IF-1, chloroplastic [Cucumis melo])

HSP 1 Score: 205.3 bits (521), Expect = 8.5e-50
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1

Query: 1   MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKS 60
           MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKS
Sbjct: 1   MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKS 60

Query: 61  PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISG 102
           PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISG
Sbjct: 61  PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISG 101

BLAST of MELO3C016702 vs. NCBI nr
Match: gi|778695943|ref|XP_011654076.1| (PREDICTED: translation initiation factor IF-1, chloroplastic [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 1.3e-45
Identity = 94/101 (93.07%), Postives = 96/101 (95.05%), Query Frame = 1

Query: 1   MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKS 60
           MSSTNLLQFPLLQSHFRPPSTLLFP VKSHLS+ SISFPTSQFLHTPSHA P F LMAKS
Sbjct: 1   MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFVLMAKS 60

Query: 61  PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISG 102
           PKNDTSEQKLSHEGSVVESLPNGMFRVRLDN+DLILGYISG
Sbjct: 61  PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISG 101

BLAST of MELO3C016702 vs. NCBI nr
Match: gi|502183724|ref|XP_004517199.1| (PREDICTED: translation initiation factor IF-1, chloroplastic [Cicer arietinum])

HSP 1 Score: 79.3 bits (194), Expect = 7.0e-12
Identity = 49/92 (53.26%), Postives = 56/92 (60.87%), Query Frame = 1

Query: 15  HFRPPSTLLFPPV-KSHLSVVSISFPTSQFLHTPSHAPPG---FALMAKSPKND-TSEQK 74
           H R PST   P    +H   ++   PT  FL  P  +P     F + AK P  D +SEQK
Sbjct: 16  HHRLPSTTTHPLCFNAHNHNLTPHPPTLSFLRPPLLSPSPSSIFTVSAKPPTTDKSSEQK 75

Query: 75  LSHEGSVVESLPNGMFRVRLDNEDLILGYISG 102
             HEG + ESLPNGMFRVRLDNEDLILGYISG
Sbjct: 76  WVHEGLITESLPNGMFRVRLDNEDLILGYISG 107

BLAST of MELO3C016702 vs. NCBI nr
Match: gi|357516503|ref|XP_003628540.1| (translation initiation factor IF-1 [Medicago truncatula])

HSP 1 Score: 77.8 bits (190), Expect = 2.0e-11
Identity = 50/92 (54.35%), Postives = 55/92 (59.78%), Query Frame = 1

Query: 15  HFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSH---APPG-FALMAKSPKND-TSEQK 74
           H R PST +     S     ++ F T  FL  PS     PP  F + AKS   D  SEQK
Sbjct: 15  HHRQPSTTITTHSFS-FHTPTLHFRTPSFLRPPSPLNLTPPSIFTVAAKSSTPDKASEQK 74

Query: 75  LSHEGSVVESLPNGMFRVRLDNEDLILGYISG 102
             HEG + ESLPNGMFRVRLDNEDLILGYISG
Sbjct: 75  WVHEGLITESLPNGMFRVRLDNEDLILGYISG 105

BLAST of MELO3C016702 vs. NCBI nr
Match: gi|802563043|ref|XP_012066685.1| (PREDICTED: translation initiation factor IF-1, chloroplastic [Jatropha curcas])

HSP 1 Score: 77.0 bits (188), Expect = 3.5e-11
Identity = 46/89 (51.69%), Postives = 56/89 (62.92%), Query Frame = 1

Query: 14  SHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKSPK-NDTSEQKLSH 73
           S  +PP+TL   P    LS   I      FL   +   P F+++ ++ K N   EQK +H
Sbjct: 20  SSTKPPTTLY--PRTVFLSQGLIKTTPLNFLKIGTVPAPRFSVLIQASKVNPPGEQKWTH 79

Query: 74  EGSVVESLPNGMFRVRLDNEDLILGYISG 102
           EGSV ESLPNGMFRVRLDNEDLI+GYISG
Sbjct: 80  EGSVTESLPNGMFRVRLDNEDLIIGYISG 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
IF1C_SOYBN2.7e-1165.63Translation initiation factor IF-1, chloroplastic OS=Glycine max GN=infA PE=2 SV... [more]
IF1C_ASACA2.3e-1085.71Translation initiation factor IF-1, chloroplastic OS=Asarum canadense GN=infA PE... [more]
IF1C_DIOEL2.3e-1085.71Translation initiation factor IF-1, chloroplastic OS=Dioscorea elephantipes GN=i... [more]
IF1C_PHAAO3.8e-1088.57Translation initiation factor IF-1, chloroplastic OS=Phalaenopsis aphrodite subs... [more]
IF1C_LIRTU5.0e-1085.71Translation initiation factor IF-1, chloroplastic OS=Liriodendron tulipifera GN=... [more]
Match NameE-valueIdentityDescription
A0A0A0L4Q7_CUCSA8.8e-4693.07Uncharacterized protein OS=Cucumis sativus GN=Csa_4G637710 PE=3 SV=1[more]
G7LDQ8_MEDTR1.4e-1154.35Translation initiation factor IF-1 OS=Medicago truncatula GN=MTR_8g061130 PE=3 S... [more]
A0A067LED1_JATCU2.4e-1151.69Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00251 PE=3 SV=1[more]
A0A0L9TRQ0_PHAAN9.2e-1148.48Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g272200 PE=3 SV=1[more]
A0A0S3R775_PHAAN9.2e-1148.48Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G452400 PE=... [more]
Match NameE-valueIdentityDescription
gi|659103075|ref|XP_008452461.1|8.5e-50100.00PREDICTED: translation initiation factor IF-1, chloroplastic [Cucumis melo][more]
gi|778695943|ref|XP_011654076.1|1.3e-4593.07PREDICTED: translation initiation factor IF-1, chloroplastic [Cucumis sativus][more]
gi|502183724|ref|XP_004517199.1|7.0e-1253.26PREDICTED: translation initiation factor IF-1, chloroplastic [Cicer arietinum][more]
gi|357516503|ref|XP_003628540.1|2.0e-1154.35translation initiation factor IF-1 [Medicago truncatula][more]
gi|802563043|ref|XP_012066685.1|3.5e-1151.69PREDICTED: translation initiation factor IF-1, chloroplastic [Jatropha curcas][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR004368TIF_IF1
IPR006196RNA-binding_domain_S1_IF1
IPR012340NA-bd_OB-fold
IPR022967S1_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0006413 translational initiation
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0010027 thylakoid membrane organization
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
cellular_component GO:0005829 cytosol
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0043022 ribosome binding
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU45910melon EST collection version 4.0transcribed_cluster
MU46287melon EST collection version 4.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C016702T2MELO3C016702T2mRNA
MELO3C016702T1MELO3C016702T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU45910MU45910transcribed_cluster
MU46287MU46287transcribed_cluster


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004368Translation initiation factor IF-1HAMAPMF_00075IF_1coord: 57..135
score: 23
IPR004368Translation initiation factor IF-1TIGRFAMsTIGR00008TIGR00008coord: 67..134
score: 1.4
IPR006196RNA-binding domain, S1, IF1 typePFAMPF01176eIF-1acoord: 73..133
score: 2.9
IPR006196RNA-binding domain, S1, IF1 typePROFILEPS50832S1_IF1_TYPEcoord: 61..135
score: 20
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 62..134
score: 2.5
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 67..133
score: 1.89
IPR022967RNA-binding domain, S1SMARTSM00316S1_6coord: 67..135
score: 0.
NoneNo IPR availablePANTHERPTHR33370FAMILY NOT NAMEDcoord: 61..137
score: 2.5
NoneNo IPR availablePANTHERPTHR33370:SF1TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTICcoord: 61..137
score: 2.5