MELO3C016682 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C016682
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	ATP synthase subunit a
Location	chr7 : 2905179 .. 2905343 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCAAATGTTGTAAATCCCACCCCATTAAGCCTCCCATTATCCGTTCCTACTGGGAAATTGAATTCCAATCCCACAATTTGCCTCTTAACGAAACCCTCAATTCCTACTCTCTCAATTCACTCTACTTTCTCTCTCAACAACAACTTCTTCAGATTTTCTTCCAATTTCTCTCTCAAGCCTTCTTCTTCCCTTGCTTCAGGTAACGAAATGTTGAAGCATTCTTCCCCATATCTGCTGCTTTTGAACCTCGTGTTTCGTTCTTTTGATGTTAATGCTGAGAAAATATGGAACCATTCTTGGGTTTCTGCTTAA

mRNA sequence

ATGGCTGCAAATGTTGTAAATCCCACCCCATTAAGCCTCCCATTATCCGTTCCTACTGGGAAATTGAATTCCAATCCCACAATTTGCCTCTTAACGAAACCCTCAATTCCTACTCTCTCAATTCACTCTACTTTCTCTCTCAACAACAACTTCTTCAGATTTTCTTCCAATTTCTCTCTCAAGCCTTCTTCTTCCCTTGCTTCAGGTAACGAAATGTTGAAGCATTCTTCCCCATATCTGCTGCTTTTGAACCTCGTGTTTCGTTCTTTTGATGTTAATGCTGAGAAAATATGGAACCATTCTTGGGTTTCTGCTTAA

Coding sequence (CDS)

ATGGCTGCAAATGTTGTAAATCCCACCCCATTAAGCCTCCCATTATCCGTTCCTACTGGGAAATTGAATTCCAATCCCACAATTTGCCTCTTAACGAAACCCTCAATTCCTACTCTCTCAATTCACTCTACTTTCTCTCTCAACAACAACTTCTTCAGATTTTCTTCCAATTTCTCTCTCAAGCCTTCTTCTTCCCTTGCTTCAGGTAACGAAATGTTGAAGCATTCTTCCCCATATCTGCTGCTTTTGAACCTCGTGTTTCGTTCTTTTGATGTTAATGCTGAGAAAATATGGAACCATTCTTGGGTTTCTGCTTAA

Protein sequence

MAANVVNPTPLSLPLSVPTGKLNSNPTICLLTKPSIPTLSIHSTFSLNNNFFRFSSNFSLKPSSSLASGNEMLKHSSPYLLLLNLVFRSFDVNAEKIWNHSWVSA*

Homology

[Close]

BLAST of MELO3C016682 vs. TrEMBL
Match: A0A0A0L368_CUCSA (Chalcone-flavonone isomerase family protein OS=Cucumis sativus GN=Csa_4G622760 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 7.0e-25
Identity = 60/68 (88.24%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 1  MAANVVNPTPLSLPLSVPTGKLNSNPTICLLTKPSIPTLSIHSTFSLNNNFFRFSSNFSL 60
          MAAN VN TPLSLPLS+PTGKLNS+PTICLLTKPSIPTLSIHSTFSL+NN FRF SNFSL
Sbjct: 1  MAANAVNSTPLSLPLSIPTGKLNSSPTICLLTKPSIPTLSIHSTFSLSNNNFRFYSNFSL 60

Query: 61 KPSSSLAS 69
          +PSSSLAS
Sbjct: 61 RPSSSLAS 68

[Close]

BLAST of MELO3C016682 vs. NCBI nr
Match: gi|659103021|ref|XP_008452433.1| (PREDICTED: fatty-acid-binding protein 3 isoform X2 [Cucumis melo])

HSP 1 Score: 139.4 bits (350), Expect = 3.6e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1   MAANVVNPTPLSLPLSVPTGKLNSNPTICLLTKPSIPTLSIHSTFSLNNNFFRFSSNFSL 60
           MAANVVNPTPLSLPLSVPTGKLNSNPTICLLTKPSIPTLSIHSTFSLNNNFFRFSSNFSL
Sbjct: 39  MAANVVNPTPLSLPLSVPTGKLNSNPTICLLTKPSIPTLSIHSTFSLNNNFFRFSSNFSL 98

Query: 61  KPSSSLASG 70
           KPSSSLASG
Sbjct: 99  KPSSSLASG 107

[Close]

BLAST of MELO3C016682 vs. NCBI nr
Match: gi|659103018|ref|XP_008452432.1| (PREDICTED: fatty-acid-binding protein 3 isoform X1 [Cucumis melo])

HSP 1 Score: 137.1 bits (344), Expect = 1.8e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 1   MAANVVNPTPLSLPLSVPTGKLNSNPTICLLTKPSIPTLSIHSTFSLNNNFFRFSSNFSL 60
           MAANVVNPTPLSLPLSVPTGKLNSNPTICLLTKPSIPTLSIHSTFSLNNNFFRFSSNFSL
Sbjct: 39  MAANVVNPTPLSLPLSVPTGKLNSNPTICLLTKPSIPTLSIHSTFSLNNNFFRFSSNFSL 98

Query: 61  KPSSSLAS 69
           KPSSSLAS
Sbjct: 99  KPSSSLAS 106

[Close]

BLAST of MELO3C016682 vs. NCBI nr
Match: gi|778695591|ref|XP_011654021.1| (PREDICTED: fatty-acid-binding protein 3 isoform X2 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 2.0e-25
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 1  MAANVVNPTPLSLPLSVPTGKLNSNPTICLLTKPSIPTLSIHSTFSLNNNFFRFSSNFSL 60
          MAAN VN TPLSLPLS+PTGKLNS+PTICLLTKPSIPTLSIHSTFSL+NN FRF SNFSL
Sbjct: 1  MAANAVNSTPLSLPLSIPTGKLNSSPTICLLTKPSIPTLSIHSTFSLSNNNFRFYSNFSL 60

Query: 61 KPSSSLASG 70
          +PSSSLASG
Sbjct: 61 RPSSSLASG 69

[Close]

BLAST of MELO3C016682 vs. NCBI nr
Match: gi|449456545|ref|XP_004146009.1| (PREDICTED: fatty-acid-binding protein 3 isoform X1 [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 1.0e-24
Identity = 60/68 (88.24%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 1  MAANVVNPTPLSLPLSVPTGKLNSNPTICLLTKPSIPTLSIHSTFSLNNNFFRFSSNFSL 60
          MAAN VN TPLSLPLS+PTGKLNS+PTICLLTKPSIPTLSIHSTFSL+NN FRF SNFSL
Sbjct: 1  MAANAVNSTPLSLPLSIPTGKLNSSPTICLLTKPSIPTLSIHSTFSLSNNNFRFYSNFSL 60

Query: 61 KPSSSLAS 69
          +PSSSLAS
Sbjct: 61 RPSSSLAS 68

The following BLAST results are available for this feature:

BLAST of MELO3C016682 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L368_CUCSA	7.0e-25	88.24	Chalcone-flavonone isomerase family protein OS=Cucumis sativus GN=Csa_4G622760 P...	[more]

BLAST of MELO3C016682 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659103021\|ref\|XP_008452433.1\|	3.6e-30	100.00	PREDICTED: fatty-acid-binding protein 3 isoform X2 [Cucumis melo]	[more]
gi\|659103018\|ref\|XP_008452432.1\|	1.8e-29	100.00	PREDICTED: fatty-acid-binding protein 3 isoform X1 [Cucumis melo]	[more]
gi\|778695591\|ref\|XP_011654021.1\|	2.0e-25	88.41	PREDICTED: fatty-acid-binding protein 3 isoform X2 [Cucumis sativus]	[more]
gi\|449456545\|ref\|XP_004146009.1\|	1.0e-24	88.24	PREDICTED: fatty-acid-binding protein 3 isoform X1 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C016682T2	MELO3C016682T2	mRNA
MELO3C016682T1	MELO3C016682T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C016682	Cucumber (Chinese Long) v3	cucmeB309
MELO3C016682	Wax gourd	mewgoB609
MELO3C016682	Cucumber (Gy14) v1	cgymeB045
MELO3C016682	Cucurbita maxima (Rimu)	cmameB045
MELO3C016682	Cucurbita moschata (Rifu)	cmomeB034
MELO3C016682	Wild cucumber (PI 183967)	cpimeB303
MELO3C016682	Cucumber (Chinese Long) v2	cumeB307
MELO3C016682	Watermelon (Charleston Gray)	mewcgB461
MELO3C016682	Watermelon (Charleston Gray)	mewcgB480
MELO3C016682	Watermelon (97103) v1	mewmB543
MELO3C016682	Bottle gourd (USVL1VR-Ls)	lsimeB321
MELO3C016682	Cucumber (Gy14) v2	cgybmeB265
MELO3C016682	Watermelon (97103) v2	mewmbB471