MELO3C016681 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C016681
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Chalcone-flavonone isomerase family protein
Location	chr7 : 2906001 .. 2906294 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCTTGTTCAGAAAAATCTTTACAGATTGTTCTTGTTCGAGATGTCGATGGAAAAACTTTCTGGGATGCCTTGGATGATGCCATTTCTCCAAGAATCAAAGCACCTACACCCGGTGATGAATCTGCATTATCTACCTTTCGTAGCATCTTTGAGGGACGATCTCTTAAGAAAGGAACTTTCATATTCTTGACTTGGTTGGAACCTCCAAAGATGCTCGTATGTTTGAATTTTAACCGAATGACATTCTCTATTCTATTTCAGCCAATAATGATATTGCAGTACTCTTAG

mRNA sequence

ATGGCAGCTTGTTCAGAAAAATCTTTACAGATTGTTCTTGTTCGAGATGTCGATGGAAAAACTTTCTGGGATGCCTTGGATGATGCCATTTCTCCAAGAATCAAAGCACCTACACCCGGTGATGAATCTGCATTATCTACCTTTCGTAGCATCTTTGAGGGACGATCTCTTAAGAAAGGAACTTTCATATTCTTGACTTGGTTGGAACCTCCAAAGATGCTCGTATGTTTGAATTTTAACCGAATGACATTCTCTATTCTATTTCAGCCAATAATGATATTGCAGTACTCTTAG

Coding sequence (CDS)

ATGGCAGCTTGTTCAGAAAAATCTTTACAGATTGTTCTTGTTCGAGATGTCGATGGAAAAACTTTCTGGGATGCCTTGGATGATGCCATTTCTCCAAGAATCAAAGCACCTACACCCGGTGATGAATCTGCATTATCTACCTTTCGTAGCATCTTTGAGGGACGATCTCTTAAGAAAGGAACTTTCATATTCTTGACTTGGTTGGAACCTCCAAAGATGCTCGTATGTTTGAATTTTAACCGAATGACATTCTCTATTCTATTTCAGCCAATAATGATATTGCAGTACTCTTAG

Protein sequence

MAACSEKSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPGDESALSTFRSIFEGRSLKKGTFIFLTWLEPPKMLVCLNFNRMTFSILFQPIMILQYS*

Homology

[Close]

BLAST of MELO3C016681 vs. Swiss-Prot
Match: FAP3_ARATH (Fatty-acid-binding protein 3, chloroplastic OS=Arabidopsis thaliana GN=FAP3 PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 7.3e-22
Identity = 51/76 (67.11%), Postives = 59/76 (77.63%), Query Frame = 1


Query: 3   ACSEKSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPGDESALSTFRSIFEGRSLKKGTF 62
           A +EKSLQIVLVRDVDGKTFWDALD+AISPRIK+P+  D +ALSTFR IF+ R L KG+ 
Sbjct: 164 AQAEKSLQIVLVRDVDGKTFWDALDEAISPRIKSPSSEDTTALSTFRGIFQNRPLNKGSV 223

Query: 63  IFLTWLEPPKMLVCLN 79
           I LTW+    MLV ++
Sbjct: 224 ILLTWINTSNMLVSVS 239

[Close]

BLAST of MELO3C016681 vs. TrEMBL
Match: A0A0A0L368_CUCSA (Chalcone-flavonone isomerase family protein OS=Cucumis sativus GN=Csa_4G622760 PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.6e-31
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 1


Query: 5   SEKSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPGDESALSTFRSIFEGRSLKKGTFIF 64
           SEKSLQIVLVRDVDGKTFWDALDDAISPRIKAPTP DESALSTFRSIFEGRSLKKGTFIF
Sbjct: 157 SEKSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPDDESALSTFRSIFEGRSLKKGTFIF 216

Query: 65  LTWLEPPKMLVCLNFN 81
           LTWLEPPKMLV ++ +
Sbjct: 217 LTWLEPPKMLVSISID 232

[Close]

BLAST of MELO3C016681 vs. TrEMBL
Match: B9SR68_RICCO (Chalcone-flavonone isomerase family protein OS=Ricinus communis GN=RCOM_1182750 PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.9e-29
Identity = 66/84 (78.57%), Postives = 75/84 (89.29%), Query Frame = 1


Query: 3  ACSEKSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPGDESALSTFRSIFEGRSLKKGTF 62
          A SEKSL IVLVRDVDGKTFWDALDDAISPRI+APTP DESALSTFRSIF+GR LKKGTF
Sbjct: 4  ASSEKSLLIVLVRDVDGKTFWDALDDAISPRIEAPTPVDESALSTFRSIFQGRPLKKGTF 63

Query: 63 IFLTWLEPPKMLVCLNFNRMTFSI 87
          IFLTWL+P KML+C++ + M  ++
Sbjct: 64 IFLTWLDPSKMLICISSDGMQATV 87

[Close]

BLAST of MELO3C016681 vs. TrEMBL
Match: E0CRY9_VITVI (Chalcone-flavonone isomerase family protein OS=Vitis vinifera GN=VIT_19s0014g00100 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.3e-28
Identity = 64/81 (79.01%), Postives = 74/81 (91.36%), Query Frame = 1


Query: 6   EKSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPGDESALSTFRSIFEGRSLKKGTFIFL 65
           EKSLQIVLVRDVDGKTFWDALD+AISPRIKAP+P D SALSTFRSIF+GRSL+KGTFIFL
Sbjct: 163 EKSLQIVLVRDVDGKTFWDALDEAISPRIKAPSPVDVSALSTFRSIFQGRSLRKGTFIFL 222

Query: 66  TWLEPPKMLVCLNFNRMTFSI 87
           TW+EP KMLVC++ + +  S+
Sbjct: 223 TWMEPSKMLVCISSDGLPSSV 243

[Close]

BLAST of MELO3C016681 vs. TrEMBL
Match: A5C8D5_VITVI (Chalcone-flavonone isomerase family protein OS=Vitis vinifera GN=VITISV_004495 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.3e-28
Identity = 64/81 (79.01%), Postives = 74/81 (91.36%), Query Frame = 1


Query: 6   EKSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPGDESALSTFRSIFEGRSLKKGTFIFL 65
           EKSLQIVLVRDVDGKTFWDALD+AISPRIKAP+P D SALSTFRSIF+GRSL+KGTFIFL
Sbjct: 114 EKSLQIVLVRDVDGKTFWDALDEAISPRIKAPSPVDVSALSTFRSIFQGRSLRKGTFIFL 173

Query: 66  TWLEPPKMLVCLNFNRMTFSI 87
           TW+EP KMLVC++ + +  S+
Sbjct: 174 TWMEPSKMLVCISSDGLPSSV 194

[Close]

BLAST of MELO3C016681 vs. TrEMBL
Match: M5WV36_PRUPE (Chalcone-flavonone isomerase family protein OS=Prunus persica GN=PRUPE_ppa011189mg PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.4e-27
Identity = 62/81 (76.54%), Postives = 73/81 (90.12%), Query Frame = 1


Query: 6   EKSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPGDESALSTFRSIFEGRSLKKGTFIFL 65
           EKSLQIVLVRDV+GKTFWDAL+DAISPRIK+PTP DESALSTFRSIF+G+ LKKGTFIFL
Sbjct: 100 EKSLQIVLVRDVEGKTFWDALNDAISPRIKSPTPVDESALSTFRSIFQGQPLKKGTFIFL 159

Query: 66  TWLEPPKMLVCLNFNRMTFSI 87
           TW +P KMLVC++ + +  S+
Sbjct: 160 TWPDPSKMLVCISADGLPSSV 180

[Close]

BLAST of MELO3C016681 vs. TAIR10
Match: AT1G53520.1 (AT1G53520.1 Chalcone-flavanone isomerase family protein)

HSP 1 Score: 104.4 bits (259), Expect = 4.1e-23
Identity = 51/76 (67.11%), Postives = 59/76 (77.63%), Query Frame = 1


Query: 3   ACSEKSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPGDESALSTFRSIFEGRSLKKGTF 62
           A +EKSLQIVLVRDVDGKTFWDALD+AISPRIK+P+  D +ALSTFR IF+ R L KG+ 
Sbjct: 164 AQAEKSLQIVLVRDVDGKTFWDALDEAISPRIKSPSSEDTTALSTFRGIFQNRPLNKGSV 223

Query: 63  IFLTWLEPPKMLVCLN 79
           I LTW+    MLV ++
Sbjct: 224 ILLTWINTSNMLVSVS 239

[Close]

BLAST of MELO3C016681 vs. NCBI nr
Match: gi|659103018|ref|XP_008452432.1| (PREDICTED: fatty-acid-binding protein 3 isoform X1 [Cucumis melo])

HSP 1 Score: 151.8 bits (382), Expect = 6.4e-34
Identity = 73/78 (93.59%), Postives = 76/78 (97.44%), Query Frame = 1


Query: 3   ACSEKSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPGDESALSTFRSIFEGRSLKKGTF 62
           +CSEKSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPGDESALSTFRSIFEGRSLKKGTF
Sbjct: 193 SCSEKSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPGDESALSTFRSIFEGRSLKKGTF 252

Query: 63  IFLTWLEPPKMLVCLNFN 81
           IFLTWLEPPKMLV ++ N
Sbjct: 253 IFLTWLEPPKMLVSISIN 270

[Close]

BLAST of MELO3C016681 vs. NCBI nr
Match: gi|659103021|ref|XP_008452433.1| (PREDICTED: fatty-acid-binding protein 3 isoform X2 [Cucumis melo])

HSP 1 Score: 151.8 bits (382), Expect = 6.4e-34
Identity = 73/78 (93.59%), Postives = 76/78 (97.44%), Query Frame = 1


Query: 3   ACSEKSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPGDESALSTFRSIFEGRSLKKGTF 62
           +CSEKSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPGDESALSTFRSIFEGRSLKKGTF
Sbjct: 189 SCSEKSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPGDESALSTFRSIFEGRSLKKGTF 248

Query: 63  IFLTWLEPPKMLVCLNFN 81
           IFLTWLEPPKMLV ++ N
Sbjct: 249 IFLTWLEPPKMLVSISIN 266

[Close]

BLAST of MELO3C016681 vs. NCBI nr
Match: gi|449456545|ref|XP_004146009.1| (PREDICTED: fatty-acid-binding protein 3 isoform X1 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 2.3e-31
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 1


Query: 5   SEKSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPGDESALSTFRSIFEGRSLKKGTFIF 64
           SEKSLQIVLVRDVDGKTFWDALDDAISPRIKAPTP DESALSTFRSIFEGRSLKKGTFIF
Sbjct: 157 SEKSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPDDESALSTFRSIFEGRSLKKGTFIF 216

Query: 65  LTWLEPPKMLVCLNFN 81
           LTWLEPPKMLV ++ +
Sbjct: 217 LTWLEPPKMLVSISID 232

[Close]

BLAST of MELO3C016681 vs. NCBI nr
Match: gi|778695591|ref|XP_011654021.1| (PREDICTED: fatty-acid-binding protein 3 isoform X2 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 2.3e-31
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 1


Query: 5   SEKSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPGDESALSTFRSIFEGRSLKKGTFIF 64
           SEKSLQIVLVRDVDGKTFWDALDDAISPRIKAPTP DESALSTFRSIFEGRSLKKGTFIF
Sbjct: 153 SEKSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPDDESALSTFRSIFEGRSLKKGTFIF 212

Query: 65  LTWLEPPKMLVCLNFN 81
           LTWLEPPKMLV ++ +
Sbjct: 213 LTWLEPPKMLVSISID 228

[Close]

BLAST of MELO3C016681 vs. NCBI nr
Match: gi|223532096|gb|EEF33904.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 136.3 bits (342), Expect = 2.8e-29
Identity = 66/84 (78.57%), Postives = 75/84 (89.29%), Query Frame = 1


Query: 3  ACSEKSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPGDESALSTFRSIFEGRSLKKGTF 62
          A SEKSL IVLVRDVDGKTFWDALDDAISPRI+APTP DESALSTFRSIF+GR LKKGTF
Sbjct: 4  ASSEKSLLIVLVRDVDGKTFWDALDDAISPRIEAPTPVDESALSTFRSIFQGRPLKKGTF 63

Query: 63 IFLTWLEPPKMLVCLNFNRMTFSI 87
          IFLTWL+P KML+C++ + M  ++
Sbjct: 64 IFLTWLDPSKMLICISSDGMQATV 87

The following BLAST results are available for this feature:

BLAST of MELO3C016681 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FAP3_ARATH	7.3e-22	67.11	Fatty-acid-binding protein 3, chloroplastic OS=Arabidopsis thaliana GN=FAP3 PE=1...	[more]

BLAST of MELO3C016681 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L368_CUCSA	1.6e-31	92.11	Chalcone-flavonone isomerase family protein OS=Cucumis sativus GN=Csa_4G622760 P...	[more]
B9SR68_RICCO	1.9e-29	78.57	Chalcone-flavonone isomerase family protein OS=Ricinus communis GN=RCOM_1182750 ...	[more]
E0CRY9_VITVI	1.3e-28	79.01	Chalcone-flavonone isomerase family protein OS=Vitis vinifera GN=VIT_19s0014g001...	[more]
A5C8D5_VITVI	1.3e-28	79.01	Chalcone-flavonone isomerase family protein OS=Vitis vinifera GN=VITISV_004495 P...	[more]
M5WV36_PRUPE	2.4e-27	76.54	Chalcone-flavonone isomerase family protein OS=Prunus persica GN=PRUPE_ppa011189...	[more]

BLAST of MELO3C016681 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G53520.1	4.1e-23	67.11	Chalcone-flavanone isomerase family protein	[more]

BLAST of MELO3C016681 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659103018\|ref\|XP_008452432.1\|	6.4e-34	93.59	PREDICTED: fatty-acid-binding protein 3 isoform X1 [Cucumis melo]	[more]
gi\|659103021\|ref\|XP_008452433.1\|	6.4e-34	93.59	PREDICTED: fatty-acid-binding protein 3 isoform X2 [Cucumis melo]	[more]
gi\|449456545\|ref\|XP_004146009.1\|	2.3e-31	92.11	PREDICTED: fatty-acid-binding protein 3 isoform X1 [Cucumis sativus]	[more]
gi\|778695591\|ref\|XP_011654021.1\|	2.3e-31	92.11	PREDICTED: fatty-acid-binding protein 3 isoform X2 [Cucumis sativus]	[more]
gi\|223532096\|gb\|EEF33904.1\|	2.8e-29	78.57	conserved hypothetical protein [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016087	Chalcone_isomerase
IPR016088	Chalcone_isomerase_3-sand

Vocabulary: **Molecular Function**
Term	Definition
GO:0016872	intramolecular lyase activity
GO:0045430	chalcone isomerase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0009813	flavonoid biosynthetic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006631	fatty acid metabolic process
biological_process	GO:0009813	flavonoid biosynthetic process
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0045430	chalcone isomerase activity
molecular_function	GO:0005504	fatty acid binding
molecular_function	GO:0016872	intramolecular lyase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C016681T1	MELO3C016681T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016087	Chalcone isomerase	unknown	SSF54626	Chalcone isomerase	coord: 5..77 score: 2.22
IPR016088	Chalcone isomerase, 3-layer sandwich	GENE3D	G3DSA:3.50.70.10		coord: 3..73 score: 2.
None	No IPR available	PANTHER	PTHR28039	FAMILY NOT NAMED	coord: 6..82 score: 9.1
None	No IPR available	PANTHER	PTHR28039:SF6	ALTERED INHERITANCE OF MITOCHONDRIA PROTEIN 18, MITOCHONDRIAL-RELATED	coord: 6..82 score: 9.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C016681	Watermelon (97103) v2	mewmbB471
MELO3C016681	Cucumber (Chinese Long) v3	cucmeB309
MELO3C016681	Wax gourd	mewgoB609
MELO3C016681	Cucumber (Gy14) v1	cgymeB045
MELO3C016681	Cucurbita maxima (Rimu)	cmameB045
MELO3C016681	Cucurbita moschata (Rifu)	cmomeB034
MELO3C016681	Wild cucumber (PI 183967)	cpimeB303
MELO3C016681	Cucumber (Chinese Long) v2	cumeB307
MELO3C016681	Watermelon (Charleston Gray)	mewcgB461
MELO3C016681	Watermelon (Charleston Gray)	mewcgB480
MELO3C016681	Watermelon (97103) v1	mewmB543
MELO3C016681	Bottle gourd (USVL1VR-Ls)	lsimeB321
MELO3C016681	Cucumber (Gy14) v2	cgybmeB265