MELO3C016677.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C016677.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionPentatricopeptide repeat-containing family protein
Locationchr07 : 2922210 .. 2922455 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTAAAGGAAGCAACTTCCATACTGGACGAGATGATCTTCAAGGGTTATGTGCCTCGTAATGAAAGCATAAACAAACTCGTAGACAGGTTGTGCCAGGAATGCAATATGGAGCTGTTGTGGATGGTCTTAAACAGTCTGGGAAGAGGAAATCGCATGAATATGGACACGTGGGCTAGAGTTGTTGCTTTTCTTTACAAGGAGAACCTATTGGAATCCTCCAACTTAATTGACTCATTGATCAGTTGA

mRNA sequence

CTAAAGGAAGCAACTTCCATACTGGACGAGATGATCTTCAAGGGTTATGTGCCTCGTAATGAAAGCATAAACAAACTCGTAGACAGGTTGTGCCAGGAATGCAATATGGAGCTGTTGTGGATGGTCTTAAACAGTCTGGGAAGAGGAAATCGCATGAATATGGACACGTGGGCTAGAGTTGTTGCTTTTCTTTACAAGGAGAACCTATTGGAATCCTCCAACTTAATTGACTCATTGATCAGTTGA

Coding sequence (CDS)

ATGATCTTCAAGGGTTATGTGCCTCGTAATGAAAGCATAAACAAACTCGTAGACAGGTTGTGCCAGGAATGCAATATGGAGCTGTTGTGGATGGTCTTAAACAGTCTGGGAAGAGGAAATCGCATGAATATGGACACGTGGGCTAGAGTTGTTGCTTTTCTTTACAAGGAGAACCTATTGGAATCCTCCAACTTAATTGACTCATTGATCAGTTGA

Protein sequence

MIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVVAFLYKENLLESSNLIDSLIS
Homology
[Close]
BLAST of MELO3C016677.2 vs. NCBI nr
Match: XP_008452430.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330 [Cucumis melo])

HSP 1 Score: 89.0 bits (219), Expect = 7.2e-15
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0 

Query: 29  LWMVLNSLGRGNRMNMDTWARVVAFLYKENLLESSNLIDSLIS 72
           LWMVLNSLGRGNRMNMDTWARVVAFLYKENLLESSNLIDSLIS
Sbjct: 483 LWMVLNSLGRGNRMNMDTWARVVAFLYKENLLESSNLIDSLIS 525

[Close]
BLAST of MELO3C016677.2 vs. NCBI nr
Match: XP_004146077.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 2.4e-10
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 33  LNSLGRGNRMNMDTWARVVAFLYKENLLESSNLIDSLIS 72
           LNSLGRGNRMNMD WARVVAF+YKENL ESSNLIDSLIS
Sbjct: 489 LNSLGRGNRMNMDMWARVVAFVYKENLSESSNLIDSLIS 527

[Close]
BLAST of MELO3C016677.2 vs. NCBI nr
Match: KGN55020.1 (hypothetical protein Csa_4G622790 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 2.4e-10
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 33  LNSLGRGNRMNMDTWARVVAFLYKENLLESSNLIDSLIS 72
           LNSLGRGNRMNMD WARVVAF+YKENL ESSNLIDSLIS
Sbjct: 457 LNSLGRGNRMNMDMWARVVAFVYKENLSESSNLIDSLIS 495

[Close]
BLAST of MELO3C016677.2 vs. NCBI nr
Match: PQP93234.1 (putative pentatricopeptide repeat-containing protein [Prunus yedoensis var. nudiflora])

HSP 1 Score: 68.9 bits (167), Expect = 7.7e-09
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = 0 

Query: 1   MIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVVAFL-YKENL 60
           MIFKGY P   S +KLV+ LC+E +ME +  VL S+G GN +++DTWA V++ +  KE L
Sbjct: 256 MIFKGYAPHCLSAHKLVEGLCREGDMEFVRTVLTSMGNGNVLHVDTWAMVISMVCKKEKL 315

Query: 61  LESSNLIDSLI 71
              S L+DSL+
Sbjct: 316 SNVSELVDSLL 326

[Close]
BLAST of MELO3C016677.2 vs. NCBI nr
Match: GAY32460.1 (hypothetical protein CUMW_273750, partial [Citrus unshiu])

HSP 1 Score: 67.4 bits (163), Expect = 2.2e-08
Identity = 32/72 (44.44%), Postives = 52/72 (72.22%), Query Frame = 0 

Query: 1   MIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVVAFLYKEN-L 60
           MIFKG+V R+  I+  V ++C   N+E+LW VLN+L +GN ++ DTW  V++ + K++ L
Sbjct: 125 MIFKGFVSRSARIHSFVGQMCDIGNVEVLWTVLNALIKGNVIDFDTWRTVISKMCKDDML 184

Query: 61  LESSNLIDSLIS 72
           L +S L++SLI+
Sbjct: 185 LNASQLVESLIA 196

[Close]
BLAST of MELO3C016677.2 vs. TrEMBL
Match: tr|A0A1S3BT71|A0A1S3BT71_CUCME (putative pentatricopeptide repeat-containing protein At1g53330 OS=Cucumis melo OX=3656 GN=LOC103493464 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.8e-15
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0 

Query: 29  LWMVLNSLGRGNRMNMDTWARVVAFLYKENLLESSNLIDSLIS 72
           LWMVLNSLGRGNRMNMDTWARVVAFLYKENLLESSNLIDSLIS
Sbjct: 483 LWMVLNSLGRGNRMNMDTWARVVAFLYKENLLESSNLIDSLIS 525

[Close]
BLAST of MELO3C016677.2 vs. TrEMBL
Match: tr|A0A0A0KZF4|A0A0A0KZF4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G622790 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-10
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 33  LNSLGRGNRMNMDTWARVVAFLYKENLLESSNLIDSLIS 72
           LNSLGRGNRMNMD WARVVAF+YKENL ESSNLIDSLIS
Sbjct: 457 LNSLGRGNRMNMDMWARVVAFVYKENLSESSNLIDSLIS 495

[Close]
BLAST of MELO3C016677.2 vs. TrEMBL
Match: tr|A0A2H5MWT0|A0A2H5MWT0_CITUN (Uncharacterized protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_273750 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.5e-08
Identity = 32/72 (44.44%), Postives = 52/72 (72.22%), Query Frame = 0 

Query: 1   MIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVVAFLYKEN-L 60
           MIFKG+V R+  I+  V ++C   N+E+LW VLN+L +GN ++ DTW  V++ + K++ L
Sbjct: 125 MIFKGFVSRSARIHSFVGQMCDIGNVEVLWTVLNALIKGNVIDFDTWRTVISKMCKDDML 184

Query: 61  LESSNLIDSLIS 72
           L +S L++SLI+
Sbjct: 185 LNASQLVESLIA 196

[Close]
BLAST of MELO3C016677.2 vs. TrEMBL
Match: tr|A0A2P2J200|A0A2P2J200_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.3e-08
Identity = 31/71 (43.66%), Postives = 47/71 (66.20%), Query Frame = 0 

Query: 1  MIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVVAFLYKENLL 60
          M+FKG+VP   SI KLVDRL +E N+ELL  +LN   +GN ++ D W + +  ++ +N +
Sbjct: 13 MVFKGFVPHPASIFKLVDRLSKEKNVELLCSILNGACKGNAVDADLWRKAITMVFNDNKI 72

Query: 61 ES-SNLIDSLI 71
           S   L+DSL+
Sbjct: 73 SSVCELVDSLV 83

[Close]
BLAST of MELO3C016677.2 vs. TrEMBL
Match: tr|A0A151SPJ1|A0A151SPJ1_CAJCA (Putative pentatricopeptide repeat-containing protein At1g53330 family OS=Cajanus cajan OX=3821 GN=KK1_002915 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.6e-07
Identity = 30/71 (42.25%), Postives = 46/71 (64.79%), Query Frame = 0 

Query: 1   MIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVVAFLYK-ENL 60
           M+FKGYVPR+ S+N+ + RL ++   ELLW VL+ LGR    + D W  VV+ + K E +
Sbjct: 387 MVFKGYVPRSSSLNEFIGRLGRDGKFELLWKVLSGLGREGFCSEDVWRTVVSLVCKSEKM 446

Query: 61  LESSNLIDSLI 71
           L +  + D+L+
Sbjct: 447 LGAFEVFDALV 457

The following BLAST results are available for this feature:
BLAST of MELO3C016677.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008452430.17.2e-15100.00PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330 [Cucum... [more]
XP_004146077.12.4e-1092.31PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330 [Cucum... [more]
KGN55020.12.4e-1092.31hypothetical protein Csa_4G622790 [Cucumis sativus][more]
PQP93234.17.7e-0949.30putative pentatricopeptide repeat-containing protein [Prunus yedoensis var. nudi... [more]
GAY32460.12.2e-0844.44hypothetical protein CUMW_273750, partial [Citrus unshiu][more]
BLAST of MELO3C016677.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C016677.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C016677.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BT71|A0A1S3BT71_CUCME4.8e-15100.00putative pentatricopeptide repeat-containing protein At1g53330 OS=Cucumis melo O... [more]
tr|A0A0A0KZF4|A0A0A0KZF4_CUCSA1.6e-1092.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G622790 PE=4 SV=1[more]
tr|A0A2H5MWT0|A0A2H5MWT0_CITUN1.5e-0844.44Uncharacterized protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_273750 PE=4... [more]
tr|A0A2P2J200|A0A2P2J200_RHIMU3.3e-0843.66Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
tr|A0A151SPJ1|A0A151SPJ1_CAJCA3.6e-0742.25Putative pentatricopeptide repeat-containing protein At1g53330 family OS=Cajanus... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0010154 fruit development
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0009451 RNA modification
biological_process GO:0048364 root development
biological_process GO:0048367 shoot system development
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C016677.2.1MELO3C016677.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C016677.2Cla97C11G223130Watermelon (97103) v2medwmbB464
MELO3C016677.2Bhi09G002920Wax gourdmedwgoB614
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C016677.2Watermelon (97103) v1medwmB528
MELO3C016677.2Cucumber (Gy14) v2cgybmedB263
MELO3C016677.2Cucumber (Gy14) v1cgymedB045
MELO3C016677.2Cucurbita maxima (Rimu)cmamedB796
MELO3C016677.2Cucurbita moschata (Rifu)cmomedB035
MELO3C016677.2Wild cucumber (PI 183967)cpimedB297
MELO3C016677.2Cucumber (Chinese Long) v2cumedB293
MELO3C016677.2Bottle gourd (USVL1VR-Ls)lsimedB335
MELO3C016677.2Watermelon (Charleston Gray)medwcgB454
MELO3C016677.2Cucumber (Chinese Long) v3cucmedB301