MELO3C016637 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C016637
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrotransposon gag protein
Locationchr7 : 3858825 .. 3859240 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTATACGAAGCTTTTACCTCAGTTAATTCAAAATCAACAGTTAGCTCCTATTCCAATGATTCCTATACAATCTCCTTATCCAAAATGGTATGATTCAAATGCTCGATGTGATTATCATGCTGGAGGAGCGGGACACTCAACTAAAACTTGTTTGGCTTTGAAAAGAAAGGTGCAATCTCTAATTAATGTTGGATGGTTAAGCTTCAAAAATTCTGGTGAGAAGCCGAATGTCAATGAAAATCCGCTACATAATCCTGAAAATCCAAAAGTGAACGATGTGGATAGCTTTGTTGAAAAGTACAAAAATGAAGTCCATGAGATAATGATGCCTATGGAAGCACTTTTTGAAGATCTATTTGAAGCAGGATATGTTAGTCAGGAATATCTAGACCCCAACATAAGATATGAAGA

mRNA sequence

ATGACTTATACGAAGCTTTTACCTCAGTTAATTCAAAATCAACAGTTAGCTCCTATTCCAATGATTCCTATACAATCTCCTTATCCAAAATGGTATGATTCAAATGCTCGATGTGATTATCATGCTGGAGGAGCGGGACACTCAACTAAAACTTGTTTGGCTTTGAAAAGAAAGGTGCAATCTCTAATTAATGTTGGATGGTTAAGCTTCAAAAATTCTGGTGAGAAGCCGAATGTCAATGAAAATCCGCTACATAATCCTGAAAATCCAAAAGTGAACGATGTGGATAGCTTTGTTGAAAAGTACAAAAATGAAGTCCATGAGATAATGATGCCTATGGAAGCACTTTTTGAAGATCTATTTGAAGCAGGATATGTTAGTCAGGAATATCTAGACCCCAACATAAGATATGAAGA

Coding sequence (CDS)

ATGACTTATACGAAGCTTTTACCTCAGTTAATTCAAAATCAACAGTTAGCTCCTATTCCAATGATTCCTATACAATCTCCTTATCCAAAATGGTATGATTCAAATGCTCGATGTGATTATCATGCTGGAGGAGCGGGACACTCAACTAAAACTTGTTTGGCTTTGAAAAGAAAGGTGCAATCTCTAATTAATGTTGGATGGTTAAGCTTCAAAAATTCTGGTGAGAAGCCGAATGTCAATGAAAATCCGCTACATAATCCTGAAAATCCAAAAGTGAACGATGTGGATAGCTTTGTTGAAAAGTACAAAAATGAAGTCCATGAGATAATGATGCCTATGGAAGCACTTTTTGAAGATCTATTTGAAGCAGGATATGTTAGTCAGGAATATCTAGACCCCAACATAAGATATGAAGA

Protein sequence

MTYTKLLPQLIQNQQLAPIPMIPIQSPYPKWYDSNARCDYHAGGAGHSTKTCLALKRKVQSLINVGWLSFKNSGEKPNVNENPLHNPENPKVNDVDSFVEKYKNEVHEIMMPMEALFEDLFEAGYVSQEYLDPNIRYE
Homology
[Close]
BLAST of MELO3C016637 vs. TrEMBL
Match: A0A061E2I6_THECC (RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein OS=Theobroma cacao GN=TCM_007834 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 6.3e-26
Identity = 62/131 (47.33%), Postives = 84/131 (64.12%), Query Frame = 1 

Query: 3   YTKLLPQLIQNQQLAPIPMIPIQSPYPKWYDSNARCDYHAGGAGHSTKTCLALKRKVQSL 62
           YT LLPQLI+N+ LA  P+ P++ P+PKWYD NA CDYH G  GHST+ C ALK KVQ+L
Sbjct: 368 YTTLLPQLIENRLLARTPLEPLRPPFPKWYDPNAHCDYHFGIQGHSTENCTALKHKVQAL 427

Query: 63  INVGWLSFKNSGEKPNVNENPLHNPENPKVNDV-DSFVEKYKNEVHEIMMPMEALFEDLF 122
           I  G L+F    +  NV+ NPL N   P VN + +  + + K  + EI MPM+ +FE L 
Sbjct: 428 IKAGLLNFAKK-DSSNVDGNPLPNHGRPTVNAIHEGMIRRVKKGIDEIQMPMDKVFEALS 487

Query: 123 EAGYVSQEYLD 133
           +   ++ E +D
Sbjct: 488 KINAITPEPID 497

[Close]
BLAST of MELO3C016637 vs. TrEMBL
Match: A0A061FBD9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_033215 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.6e-24
Identity = 60/119 (50.42%), Postives = 78/119 (65.55%), Query Frame = 1 

Query: 3   YTKLLPQLIQNQQLAPIPMIPIQSPYPKWYDSNARCDYHAGGAGHSTKTCLALKRKVQSL 62
           YT LLPQLI+N+ LA  P+ P++ P+PKWYD NA CDYH G  GHST+ C ALK KVQ+L
Sbjct: 400 YTTLLPQLIENRLLARTPLEPLRPPFPKWYDPNAHCDYHFGIQGHSTENCTALKHKVQAL 459

Query: 63  INVGWLSFKNSGEKPNVNENPLHNPENPKVNDV-DSFVEKYKNEVHEIMMPMEALFEDL 121
           I  G L+F    +  NV+ NPL N   P VN + +  + + K  V+EI  PM+ +FE L
Sbjct: 460 IKAGLLNFAKK-DNSNVDGNPLPNHGGPTVNAIHERMIRRVKKNVNEIRTPMDRVFEAL 517

[Close]
BLAST of MELO3C016637 vs. TrEMBL
Match: A0A061EXR3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_024883 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.7e-23
Identity = 58/131 (44.27%), Postives = 81/131 (61.83%), Query Frame = 1 

Query: 3    YTKLLPQLIQNQQLAPIPMIPIQSPYPKWYDSNARCDYHAGGAGHSTKTCLALKRKVQSL 62
            YT LLPQLI+ + L   P+ P++ P+PKWYD NA CDYH G  GHST+ C ALK KVQ+L
Sbjct: 1059 YTTLLPQLIEKRLLTQTPLEPLRPPFPKWYDPNAHCDYHFGIQGHSTENCTALKHKVQAL 1118

Query: 63   INVGWLSFKNSGEKPNVNENPLHNPENPKVNDV-DSFVEKYKNEVHEIMMPMEALFEDLF 122
            I  G L+F    +  +V+ NPL N   P VN + +  + + K  + EI  PM+ +FE L 
Sbjct: 1119 IKAGLLNFTKK-DSSSVDGNPLLNHGRPTVNAIHEGMIRRVKKGIDEIQTPMDKVFEALS 1178

Query: 123  EAGYVSQEYLD 133
            +   ++ E +D
Sbjct: 1179 KINAITPEPID 1188

[Close]
BLAST of MELO3C016637 vs. TrEMBL
Match: A0A061EXR3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_024883 PE=4 SV=1)

HSP 1 Score: 34.7 bits (78), Expect = 1.1e+02
Identity = 14/45 (31.11%), Postives = 23/45 (51.11%), Query Frame = 1 

Query: 32   YDSNARCDYHAGGAGHSTKTCLALKRKVQSLINVGWLSFKNSGEK 77
            +D    C +H G  GHS + C   +RK+Q L++   + F    E+
Sbjct: 1194 HDLAYSCKFHMGAIGHSIQNCDGFRRKLQELMDSSIIEFYEGAEE 1238


HSP 2 Score: 116.3 bits (290), Expect = 2.9e-23
Identity = 58/131 (44.27%), Postives = 81/131 (61.83%), Query Frame = 1 

Query: 3   YTKLLPQLIQNQQLAPIPMIPIQSPYPKWYDSNARCDYHAGGAGHSTKTCLALKRKVQSL 62
           YT LLPQLI+N+ LA  P+ P++ P+PKWYD NA CDYH G  GHST+ C  LK KVQ+L
Sbjct: 355 YTTLLPQLIENRLLARTPLEPLRPPFPKWYDPNAHCDYHFGIQGHSTENCTTLKHKVQAL 414

Query: 63  INVGWLSFKNSGEKPNVNENPLHNPENPKVNDV-DSFVEKYKNEVHEIMMPMEALFEDLF 122
           I  G L+F    +  +V+ NPL N     VN + +  + + K  + EI  PM+ +FE L 
Sbjct: 415 IKAGLLNFAKK-DNSSVDGNPLPNHGRSTVNAIHEGMIRRVKKGIDEIQTPMDKVFEALS 474

Query: 123 EAGYVSQEYLD 133
           +   ++ E +D
Sbjct: 475 KINAITPEPID 484

[Close]
BLAST of MELO3C016637 vs. TrEMBL
Match: A0A061ELG5_THECC (Gag-pro-like protein OS=Theobroma cacao GN=TCM_020601 PE=4 SV=1)

HSP 1 Score: 33.9 bits (76), Expect = 1.9e+02
Identity = 14/45 (31.11%), Postives = 24/45 (53.33%), Query Frame = 1 

Query: 32  YDSNARCDYHAGGAGHSTKTCLALKRKVQSLINVGWLSFKNSGEK 77
           +D    C +H G  GHS + C + +RK+Q L++   + F    E+
Sbjct: 490 HDLAYSCKFHMGAIGHSIQNCDSFRRKLQELMDSSVIEFYEEVEE 534


HSP 2 Score: 115.5 bits (288), Expect = 5.0e-23
Identity = 60/131 (45.80%), Postives = 79/131 (60.31%), Query Frame = 1 

Query: 3    YTKLLPQLIQNQQLAPIPMIPIQSPYPKWYDSNARCDYHAGGAGHSTKTCLALKRKVQSL 62
            YT LLPQLI+N+ LA  P+ P++  +PKWYD NA CDYH G  GHST+ C ALK KVQ L
Sbjct: 965  YTTLLPQLIENRLLARTPLEPLRPSFPKWYDPNAHCDYHFGIQGHSTENCTALKHKVQVL 1024

Query: 63   INVGWLSFKNSGEKPNVNENPLHNPENPKVNDV-DSFVEKYKNEVHEIMMPMEALFEDLF 122
            I  G L+F    +   V+ NPL N   P VN + +  +   K  + EI  PM+ +FE L 
Sbjct: 1025 IKAGLLNFTKK-DSSGVDGNPLPNHGRPTVNAIHEGMIRMVKKGIDEIQTPMDKVFEALS 1084

Query: 123  EAGYVSQEYLD 133
            +   V+ E +D
Sbjct: 1085 KINAVTPEPID 1094

[Close]
BLAST of MELO3C016637 vs. NCBI nr
Match: gi|659129309|ref|XP_008464622.1| (PREDICTED: uncharacterized protein LOC103502461 [Cucumis melo])

HSP 1 Score: 240.0 bits (611), Expect = 2.5e-60
Identity = 115/138 (83.33%), Postives = 123/138 (89.13%), Query Frame = 1 

Query: 1   MTYTKLLPQLIQNQQLAPIPMIPIQSPYPKWYDSNARCDYHAGGAGHSTKTCLALKRKVQ 60
           MTY +LL QLIQN+QLA IPMIPI+ PYPKW+DSNARCDYHAGG GHST+ CLALKRKVQ
Sbjct: 355 MTYIELLRQLIQNRQLALIPMIPIRPPYPKWFDSNARCDYHAGGVGHSTENCLALKRKVQ 414

Query: 61  SLINVGWLSFKNSGEKPNVNENPLHNPENPKVNDVDSFVEKYKNEVHEIMMPMEALFEDL 120
           SLIN GWLSFK SGEKPNVNENPL + ENPKVN VDS VEK K+EVHEI+MPMEALFE L
Sbjct: 415 SLINAGWLSFKKSGEKPNVNENPLSDHENPKVNVVDSLVEKCKSEVHEIVMPMEALFEGL 474

Query: 121 FEAGYVSQEYLDPNIRYE 139
           FEAGYVS EYLDPNIRYE
Sbjct: 475 FEAGYVSHEYLDPNIRYE 492

[Close]
BLAST of MELO3C016637 vs. NCBI nr
Match: gi|659125951|ref|XP_008462935.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103501197 [Cucumis melo])

HSP 1 Score: 216.1 bits (549), Expect = 3.9e-53
Identity = 104/128 (81.25%), Postives = 112/128 (87.50%), Query Frame = 1 

Query: 1   MTYTKLLPQLIQNQQLAPIPMIPIQSPYPKWYDSNARCDYHAGGAGHSTKTCLALKRKVQ 60
           ++ T+LLPQLIQN+QLAPIPMIPIQ  YPKWYDSNARCDYHA G  HST+ CLALKRKVQ
Sbjct: 345 ISMTELLPQLIQNRQLAPIPMIPIQPSYPKWYDSNARCDYHAEGMRHSTENCLALKRKVQ 404

Query: 61  SLINVGWLSFKNSGEKPNVNENPLHNPENPKVNDVDSFVEKYKNEVHEIMMPMEALFEDL 120
           SLIN GWLSFK SGEKPNVNENPL + ENPKVN VDS VEK KNEVHEI+MPMEALFE L
Sbjct: 405 SLINAGWLSFKKSGEKPNVNENPLPDHENPKVNAVDSLVEKCKNEVHEIVMPMEALFEGL 464

Query: 121 FEAGYVSQ 129
           FEAGYV +
Sbjct: 465 FEAGYVEK 472

[Close]
BLAST of MELO3C016637 vs. NCBI nr
Match: gi|659122237|ref|XP_008461036.1| (PREDICTED: uncharacterized protein LOC103499741 [Cucumis melo])

HSP 1 Score: 155.2 bits (391), Expect = 8.2e-35
Identity = 70/128 (54.69%), Postives = 90/128 (70.31%), Query Frame = 1 

Query: 3   YTKLLPQLIQNQQLAPIPMIPIQSPYPKWYDSNARCDYHAGGAGHSTKTCLALKRKVQSL 62
           YTKLLPQL+++ Q+A +P  P+Q PYPKWYD NARC+YHAG  GHS + C  LK KVQSL
Sbjct: 321 YTKLLPQLLKSHQVAIVPQEPLQPPYPKWYDPNARCEYHAGTVGHSIENCFPLKAKVQSL 380

Query: 63  INVGWLSFKNSGEKPNVNENPLHNPENPKVNDVDSFVEKYKNEVHEIMMPMEALFEDLFE 122
           +  GWL FK +GE+ +VN+NPL N E P +N VD+F E+ KN V  +   M  LF+ L  
Sbjct: 381 VKAGWLKFKKTGEELDVNQNPLPNHEGPAINVVDTFTERNKNMVSGVTTSMNTLFQILHG 440

Query: 123 AGYVSQEY 131
           AGY+S  +
Sbjct: 441 AGYLSPRF 448

[Close]
BLAST of MELO3C016637 vs. NCBI nr
Match: gi|590690026|ref|XP_007043393.1| (RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Theobroma cacao])

HSP 1 Score: 125.2 bits (313), Expect = 9.0e-26
Identity = 62/131 (47.33%), Postives = 84/131 (64.12%), Query Frame = 1 

Query: 3   YTKLLPQLIQNQQLAPIPMIPIQSPYPKWYDSNARCDYHAGGAGHSTKTCLALKRKVQSL 62
           YT LLPQLI+N+ LA  P+ P++ P+PKWYD NA CDYH G  GHST+ C ALK KVQ+L
Sbjct: 368 YTTLLPQLIENRLLARTPLEPLRPPFPKWYDPNAHCDYHFGIQGHSTENCTALKHKVQAL 427

Query: 63  INVGWLSFKNSGEKPNVNENPLHNPENPKVNDV-DSFVEKYKNEVHEIMMPMEALFEDLF 122
           I  G L+F    +  NV+ NPL N   P VN + +  + + K  + EI MPM+ +FE L 
Sbjct: 428 IKAGLLNFAKK-DSSNVDGNPLPNHGRPTVNAIHEGMIRRVKKGIDEIQMPMDKVFEALS 487

Query: 123 EAGYVSQEYLD 133
           +   ++ E +D
Sbjct: 488 KINAITPEPID 497

[Close]
BLAST of MELO3C016637 vs. NCBI nr
Match: gi|590612948|ref|XP_007022527.1| (Uncharacterized protein TCM_033215 [Theobroma cacao])

HSP 1 Score: 120.6 bits (301), Expect = 2.2e-24
Identity = 60/119 (50.42%), Postives = 78/119 (65.55%), Query Frame = 1 

Query: 3   YTKLLPQLIQNQQLAPIPMIPIQSPYPKWYDSNARCDYHAGGAGHSTKTCLALKRKVQSL 62
           YT LLPQLI+N+ LA  P+ P++ P+PKWYD NA CDYH G  GHST+ C ALK KVQ+L
Sbjct: 400 YTTLLPQLIENRLLARTPLEPLRPPFPKWYDPNAHCDYHFGIQGHSTENCTALKHKVQAL 459

Query: 63  INVGWLSFKNSGEKPNVNENPLHNPENPKVNDV-DSFVEKYKNEVHEIMMPMEALFEDL 121
           I  G L+F    +  NV+ NPL N   P VN + +  + + K  V+EI  PM+ +FE L
Sbjct: 460 IKAGLLNFAKK-DNSNVDGNPLPNHGGPTVNAIHERMIRRVKKNVNEIRTPMDRVFEAL 517

The following BLAST results are available for this feature:
BLAST of MELO3C016637 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A061E2I6_THECC6.3e-2647.33RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein... [more]
A0A061FBD9_THECC1.6e-2450.42Uncharacterized protein OS=Theobroma cacao GN=TCM_033215 PE=4 SV=1[more]
A0A061EXR3_THECC1.7e-2344.27Uncharacterized protein OS=Theobroma cacao GN=TCM_024883 PE=4 SV=1[more]
A0A061EXR3_THECC1.1e+0231.11Uncharacterized protein OS=Theobroma cacao GN=TCM_024883 PE=4 SV=1[more]
A0A061ELG5_THECC1.9e+0231.11Gag-pro-like protein OS=Theobroma cacao GN=TCM_020601 PE=4 SV=1[more]
BLAST of MELO3C016637 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659129309|ref|XP_008464622.1|2.5e-6083.33PREDICTED: uncharacterized protein LOC103502461 [Cucumis melo][more]
gi|659125951|ref|XP_008462935.1|3.9e-5381.25PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103501197 [Cucumis me... [more]
gi|659122237|ref|XP_008461036.1|8.2e-3554.69PREDICTED: uncharacterized protein LOC103499741 [Cucumis melo][more]
gi|590690026|ref|XP_007043393.1|9.0e-2647.33RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein... [more]
gi|590612948|ref|XP_007022527.1|2.2e-2450.42Uncharacterized protein TCM_033215 [Theobroma cacao][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C016637T1MELO3C016637T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C016637Watermelon (97103) v2mewmbB496
MELO3C016637Cucurbita maxima (Rimu)cmameB707
MELO3C016637Cucurbita maxima (Rimu)cmameB708
MELO3C016637Cucurbita moschata (Rifu)cmomeB699
MELO3C016637Cucurbita moschata (Rifu)cmomeB700
MELO3C016637Cucurbita pepo (Zucchini)cpemeB430
MELO3C016637Cucurbita pepo (Zucchini)cpemeB431
MELO3C016637Bottle gourd (USVL1VR-Ls)lsimeB320
MELO3C016637Silver-seed gourdcarmeB0675