MELO3C016624 (gene) Melon (DHL92) v3.5.1

NameMELO3C016624
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrotransposon protein
Locationchr6 : 28801792 .. 28801959 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATATTGCGAGGACGTTGACGACGTGGACGAGGGGGACTCCACGTATGCGACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACCTAGCCGAATCGATATTCACCGATTGGCAGTTGCGTAACGCTTAG

mRNA sequence

ATGACATATTGCGAGGACGTTGACGACGTGGACGAGGGGGACTCCACGTATGCGACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACCTAGCCGAATCGATATTCACCGATTGGCAGTTGCGTAACGCTTAG

Coding sequence (CDS)

ATGACATATTGCGAGGACGTTGACGACGTGGACGAGGGGGACTCCACGTATGCGACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACCTAGCCGAATCGATATTCACCGATTGGCAGTTGCGTAACGCTTAG

Protein sequence

MTYCEDVDDVDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESIFTDWQLRNA*
BLAST of MELO3C016624 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.6e-20
Identity = 47/53 (88.68%), Postives = 49/53 (92.45%), Query Frame = 1

Query: 1   MTYCEDVDDVDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESIFTDWQLR 54
           MTYC DV+D DEGDSTYATTTASEDIQYIETTNEWSQWRDDLA S+FTDWQ R
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFR 335

BLAST of MELO3C016624 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.4e-08
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 1

Query: 1   MTYCEDVDDVDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESIFT 49
           MT  +  D++DE DST+ATT A++DI YIET+NEWSQWRD+LAE I T
Sbjct: 311 MTNFDIEDNIDEVDSTHATT-AADDIHYIETSNEWSQWRDNLAEEIMT 357

BLAST of MELO3C016624 vs. TrEMBL
Match: A0A0A0M0G4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690220 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.3e-06
Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 1

Query: 1  MTYCEDVDDVDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESIFTDWQLRN 55
          +T  + + DVDE D  YATT  + +I Y E +N+WSQWRDDL E++F  WQL N
Sbjct: 14 ITNVKILKDVDEVDLNYATTEGN-NINYNEASNKWSQWRDDLVEAMFNGWQLCN 66

BLAST of MELO3C016624 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 105.9 bits (263), Expect = 2.3e-20
Identity = 47/53 (88.68%), Postives = 49/53 (92.45%), Query Frame = 1

Query: 1   MTYCEDVDDVDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESIFTDWQLR 54
           MTYC DV+D DEGDSTYATTTASEDIQYIETTNEWSQWRDDLA S+FTDWQ R
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFR 335

BLAST of MELO3C016624 vs. NCBI nr
Match: gi|659099182|ref|XP_008450472.1| (PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo])

HSP 1 Score: 101.7 bits (252), Expect = 4.3e-19
Identity = 45/55 (81.82%), Postives = 48/55 (87.27%), Query Frame = 1

Query: 1   MTYCEDVDDVDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESIFTDWQLRNA 56
           MTYC+DVDDVDEGD  YATTT  E+I YIE TNEWSQWRD LAES+FTDWQLRNA
Sbjct: 142 MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA 196

BLAST of MELO3C016624 vs. NCBI nr
Match: gi|659121362|ref|XP_008460622.1| (PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo])

HSP 1 Score: 80.5 bits (197), Expect = 1.0e-12
Identity = 37/54 (68.52%), Postives = 46/54 (85.19%), Query Frame = 1

Query: 1   MTYCEDVDDVDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESIFTDWQLRN 55
           MT  +  D++DE DST+ATT A++DI YIET+NEWSQWRDDLAE +FTDW+LRN
Sbjct: 150 MTNFDIEDNIDEVDSTHATT-AADDIHYIETSNEWSQWRDDLAEEMFTDWELRN 202

BLAST of MELO3C016624 vs. NCBI nr
Match: gi|659125597|ref|XP_008462767.1| (PREDICTED: uncharacterized protein LOC103501052 [Cucumis melo])

HSP 1 Score: 77.4 bits (189), Expect = 8.8e-12
Identity = 32/53 (60.38%), Postives = 45/53 (84.91%), Query Frame = 1

Query: 1   MTYCEDVDDVDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESIFTDWQLR 54
           MT  ED+ D++E DS YATTT  ++IQYIETTNEW+QW+D+L++++F +WQLR
Sbjct: 107 MTNGEDLYDINEEDSAYATTTTGDNIQYIETTNEWTQWQDELSKAMFIEWQLR 159

BLAST of MELO3C016624 vs. NCBI nr
Match: gi|659086609|ref|XP_008444024.1| (PREDICTED: uncharacterized protein LOC103487473 [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-11
Identity = 33/54 (61.11%), Postives = 45/54 (83.33%), Query Frame = 1

Query: 1   MTYCEDVDDVDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESIFTDWQLRN 55
           +TY  ++DD D+GDST+ATT+  +DI YIE +NEW++WRD LA S+FT+WQLRN
Sbjct: 241 ITYINELDDEDDGDSTHATTSG-DDITYIEPSNEWTEWRDALASSMFTEWQLRN 293

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E5GBB2_CUCME1.6e-2088.68Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCB5_CUCME5.4e-0864.58Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0M0G4_CUCSA2.3e-0651.85Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690220 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|307135889|gb|ADN33754.1|2.3e-2088.68retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659099182|ref|XP_008450472.1|4.3e-1981.82PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo][more]
gi|659121362|ref|XP_008460622.1|1.0e-1268.52PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo][more]
gi|659125597|ref|XP_008462767.1|8.8e-1260.38PREDICTED: uncharacterized protein LOC103501052 [Cucumis melo][more]
gi|659086609|ref|XP_008444024.1|1.1e-1161.11PREDICTED: uncharacterized protein LOC103487473 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C016624T1MELO3C016624T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None