MELO3C016615 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C016615
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	AP complex subunit beta
Location	chr6 : 28498108 .. 28498847 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAACACTCGAAAGGGTTCTTATGCGGCAAAGTCTTCTGAAGATGATCTTGAAGCTCGAATTTCATCGCCTTCTATGCATAATATGAGGATGAGAGGTCGTCAGTTGGAAAGTACTCAACTACGGAGACCTTATTGCCTTTCGTTCAAAAAATCACAGGTGAATGTTTCAGCCAGTCTTCATGAGCCTTTGCCAGAAAAAGTTATTTCTCGTGATTCTAGGACGATTACTGAACATGCACTTGGTGTTCCTGAGACTCATATGTCTGATATAGATTTCGATGATCTTAATGATGTGCCTTTGGCCTGTTTGTGAAGAAGACTTTTGTTCCAGATGTTGCGGTTGAAAGGCCTATAGACGCTCCTGTATCTGATCATGCTCAGGAAAACTCGTCTACTGAAGGTGTGTTTGTTCCTACCCCTGGTCTTCAACATACTTCTACTTTTGAACCAGGTCCATCACTTTATTCATCTCTAGTTCAATCTCCTACTCCACATTCTACTTCCTCTAGTCTGAAAAATGACCCTGCATCTCCACCTGCTGATGAAACCGCTGCACTTGAGAGAGGGACTGATGTTCATAATGATGACGATGAGCTTGACCCTGTCATTCCTAAGGTTAATACTTGTGAGATCCCTGTTGATGTTGATGTTGATAATACCTTGGCTGCTCCAACTGAGTCTCCTGCATTTCCTGAGATATCCCGACCTGCAAAGAAAAAGTTGCAGCAGAATTAG

mRNA sequence

ATGGTGAACACTCGAAAGGGTTCTTATGCGGCAAAGTCTTCTGAAGATGATCTTGAAGCTCGAATTTCATCGCCTTCTATGCATAATATGAGGATGAGAGGTCGTCAGTTGGAAAGTACTCAACTACGGAGACCTTATTGCCTTTCGTTCAAAAAATCACAGAAGACTTTTGTTCCAGATGTTGCGGTTGAAAGGCCTATAGACGCTCCTGTATCTGATCATGCTCAGGAAAACTCGTCTACTGAAGGTGTGTTTGTTCCTACCCCTGGTCTTCAACATACTTCTACTTTTGAACCAGGTCCATCACTTTATTCATCTCTAGTTCAATCTCCTACTCCACATTCTACTTCCTCTAGTCTGAAAAATGACCCTGCATCTCCACCTGCTGATGAAACCGCTGCACTTGAGAGAGGGACTGATGTTCATAATGATGACGATGAGCTTGACCCTGTCATTCCTAAGGTTAATACTTGTGAGATCCCTGTTGATGTTGATGTTGATAATACCTTGGCTGCTCCAACTGAGTCTCCTGCATTTCCTGAGATATCCCGACCTGCAAAGAAAAAGTTGCAGCAGAATTAG

Coding sequence (CDS)

ATGGTGAACACTCGAAAGGGTTCTTATGCGGCAAAGTCTTCTGAAGATGATCTTGAAGCTCGAATTTCATCGCCTTCTATGCATAATATGAGGATGAGAGGTCGTCAGTTGGAAAGTACTCAACTACGGAGACCTTATTGCCTTTCGTTCAAAAAATCACAGAAGACTTTTGTTCCAGATGTTGCGGTTGAAAGGCCTATAGACGCTCCTGTATCTGATCATGCTCAGGAAAACTCGTCTACTGAAGGTGTGTTTGTTCCTACCCCTGGTCTTCAACATACTTCTACTTTTGAACCAGGTCCATCACTTTATTCATCTCTAGTTCAATCTCCTACTCCACATTCTACTTCCTCTAGTCTGAAAAATGACCCTGCATCTCCACCTGCTGATGAAACCGCTGCACTTGAGAGAGGGACTGATGTTCATAATGATGACGATGAGCTTGACCCTGTCATTCCTAAGGTTAATACTTGTGAGATCCCTGTTGATGTTGATGTTGATAATACCTTGGCTGCTCCAACTGAGTCTCCTGCATTTCCTGAGATATCCCGACCTGCAAAGAAAAAGTTGCAGCAGAATTAG

Protein sequence

MVNTRKGSYAAKSSEDDLEARISSPSMHNMRMRGRQLESTQLRRPYCLSFKKSQKTFVPDVAVERPIDAPVSDHAQENSSTEGVFVPTPGLQHTSTFEPGPSLYSSLVQSPTPHSTSSSLKNDPASPPADETAALERGTDVHNDDDELDPVIPKVNTCEIPVDVDVDNTLAAPTESPAFPEISRPAKKKLQQN*

Homology

[Close]

BLAST of MELO3C016615 vs. TrEMBL
Match: E5GBC0_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.9e-38
Identity = 107/229 (46.72%), Postives = 132/229 (57.64%), Query Frame = 1


Query: 1   MVNTRKGSYAAKSSEDDLEARISSPSMHNMR----------------------------- 60
           M+NTRKG+Y AKSSED LEA+I + SMH                                
Sbjct: 1   MMNTRKGTYVAKSSEDGLEAQILTTSMHGANVSTRLHKLVPNDVNSQNPTTNAEHEPSAP 60

Query: 61  ------MRGRQLESTQLRRPYCLSFKKSQKTFVPDVAVERPIDAPVSDHAQENSSTEGVF 120
                 M    L+  +L R         +KT+VP+VA    ID  VS H+QE+SSTEGVF
Sbjct: 61  KTHMYDMDSNDLDDVRLARLL-------KKTYVPNVAAGNSIDPSVSSHSQESSSTEGVF 120

Query: 121 VPTPGLQHTSTFEPGPSLYSSLVQSPTPHSTSSSLKNDPASPPADETAALERGTDVHNDD 180
           VPTPG+QHTS F+ GPSLYSS V+S  P +T+S L N+ A  PADE+A  E  TDVHND+
Sbjct: 121 VPTPGVQHTSNFKLGPSLYSSPVRSSVPDTTTSGLNNNSAPAPADESATTEGRTDVHNDE 180

Query: 181 DE-LDPVIPKVNTCEIPVDVDVDNTLAAPTESPAFPEISRPAKKKLQQN 194
           DE ++P     +T EIPVD D +N  A P ++ AFPE SRPAKK  QQN
Sbjct: 181 DEIIEPANTGDHTGEIPVD-DNNNPTAQP-KTHAFPEESRPAKKS-QQN 219

[Close]

BLAST of MELO3C016615 vs. TrEMBL
Match: E5GCP1_CUCME (Envelope-like protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.7e-19
Identity = 65/140 (46.43%), Postives = 78/140 (55.71%), Query Frame = 1


Query: 54  QKTFVPDVAVERPIDAPVSDHAQENSSTEGVFVPTPGLQHTSTFEPGPS-LYSSLVQSPT 113
           +KT +PDV VE P    VS H+QE+SSTE VFVP P +QHTS  +PGPS ++S  V SP 
Sbjct: 16  KKTTIPDVVVEMPTTPSVSIHSQESSSTEEVFVPKPSIQHTSNVQPGPSIIHSPFVHSPI 75

Query: 114 PHSTSSSLKNDPASPPADETAALERGTDVHNDDDELDPVIPKVNTCEI-PVDVDVDNTLA 173
                S      AS P D + A E  TD HND DELDP  P +++ E  PV     N   
Sbjct: 76  SEPLPSETNIAQASAPGDVSVAPEVRTDGHNDKDELDPSNPDIHSEEFHPV---AANNPT 135

Query: 174 APTESPAFPEISRPAKKKLQ 192
           AP  S   P  S+ AK K Q
Sbjct: 136 APPASHEIPIESQLAKGKSQ 152

[Close]

BLAST of MELO3C016615 vs. NCBI nr
Match: gi|307135897|gb|ADN33761.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 165.6 bits (418), Expect = 8.5e-38
Identity = 107/229 (46.72%), Postives = 132/229 (57.64%), Query Frame = 1


Query: 1   MVNTRKGSYAAKSSEDDLEARISSPSMHNMR----------------------------- 60
           M+NTRKG+Y AKSSED LEA+I + SMH                                
Sbjct: 1   MMNTRKGTYVAKSSEDGLEAQILTTSMHGANVSTRLHKLVPNDVNSQNPTTNAEHEPSAP 60

Query: 61  ------MRGRQLESTQLRRPYCLSFKKSQKTFVPDVAVERPIDAPVSDHAQENSSTEGVF 120
                 M    L+  +L R         +KT+VP+VA    ID  VS H+QE+SSTEGVF
Sbjct: 61  KTHMYDMDSNDLDDVRLARLL-------KKTYVPNVAAGNSIDPSVSSHSQESSSTEGVF 120

Query: 121 VPTPGLQHTSTFEPGPSLYSSLVQSPTPHSTSSSLKNDPASPPADETAALERGTDVHNDD 180
           VPTPG+QHTS F+ GPSLYSS V+S  P +T+S L N+ A  PADE+A  E  TDVHND+
Sbjct: 121 VPTPGVQHTSNFKLGPSLYSSPVRSSVPDTTTSGLNNNSAPAPADESATTEGRTDVHNDE 180

Query: 181 DE-LDPVIPKVNTCEIPVDVDVDNTLAAPTESPAFPEISRPAKKKLQQN 194
           DE ++P     +T EIPVD D +N  A P ++ AFPE SRPAKK  QQN
Sbjct: 181 DEIIEPANTGDHTGEIPVD-DNNNPTAQP-KTHAFPEESRPAKKS-QQN 219

[Close]

BLAST of MELO3C016615 vs. NCBI nr
Match: gi|659123177|ref|XP_008461533.1| (PREDICTED: uncharacterized protein LOC103500104 [Cucumis melo])

HSP 1 Score: 125.9 bits (315), Expect = 7.5e-26
Identity = 81/213 (38.03%), Postives = 122/213 (57.28%), Query Frame = 1


Query: 1   MVNTRKGSYAAKSSEDDLEARISSPSMHNMRMRGRQLESTQLRRPYCLSFKKS------- 60
           MVNTRKG+Y  KSSE+ L+A  S  ++H +R  GR+ +ST L+R Y L  +KS       
Sbjct: 1   MVNTRKGTYTDKSSEEVLKAPSSRAAVHEVR--GRRFKSTPLQRSYKLPSEKSHADIPTN 60

Query: 61  -------------QKTFVPDVAVERPIDAPVSDHAQENSSTEGVFVPTPGLQHTSTFEPG 120
                        +K   PDV +E+ +D  +S H+QE+S +EGVFVPTPGL+ TS+ EPG
Sbjct: 61  FDDLDDVPLARLLKKVAAPDVFLEKSVDLVLSVHSQESSPSEGVFVPTPGLRQTSSIEPG 120

Query: 121 PSLYSSLVQSPTPHSTSSSLKNDPASPPADETAALERGTDVHNDDDELDPVIPKVNTCEI 180
           PS YS  +Q P   + +S+   DP + P ++        +   ++D ++PV    +  E+
Sbjct: 121 PSHYSPPIQWPILDNIAST---DPHAAPVEDV------VEPVCNEDVVEPVDTDDHNDEV 180

Query: 181 PVDVDVDNTLAAPTESPAFPEISRPAKKKLQQN 194
           PVD +VD   +A  E+ + P    P++KK+QQN
Sbjct: 181 PVDDNVDQ--SAQQETQSVPTEPNPSRKKVQQN 200

[Close]

BLAST of MELO3C016615 vs. NCBI nr
Match: gi|307136434|gb|ADN34240.1| (envelope-like protein [Cucumis melo subsp. melo])

HSP 1 Score: 102.8 bits (255), Expect = 6.8e-19
Identity = 65/140 (46.43%), Postives = 78/140 (55.71%), Query Frame = 1


Query: 54  QKTFVPDVAVERPIDAPVSDHAQENSSTEGVFVPTPGLQHTSTFEPGPS-LYSSLVQSPT 113
           +KT +PDV VE P    VS H+QE+SSTE VFVP P +QHTS  +PGPS ++S  V SP 
Sbjct: 16  KKTTIPDVVVEMPTTPSVSIHSQESSSTEEVFVPKPSIQHTSNVQPGPSIIHSPFVHSPI 75

Query: 114 PHSTSSSLKNDPASPPADETAALERGTDVHNDDDELDPVIPKVNTCEI-PVDVDVDNTLA 173
                S      AS P D + A E  TD HND DELDP  P +++ E  PV     N   
Sbjct: 76  SEPLPSETNIAQASAPGDVSVAPEVRTDGHNDKDELDPSNPDIHSEEFHPV---AANNPT 135

Query: 174 APTESPAFPEISRPAKKKLQ 192
           AP  S   P  S+ AK K Q
Sbjct: 136 APPASHEIPIESQLAKGKSQ 152

[Close]

BLAST of MELO3C016615 vs. NCBI nr
Match: gi|659127352|ref|XP_008463658.1| (PREDICTED: uncharacterized protein LOC103501750 [Cucumis melo])

HSP 1 Score: 102.1 bits (253), Expect = 1.2e-18
Identity = 61/141 (43.26%), Postives = 80/141 (56.74%), Query Frame = 1


Query: 53  SQKTFVPDVAVERPIDAPVSDHAQENSSTEGVFVPTPGLQHTSTFEPGPSLYSSLVQSPT 112
           S  +  P++      D   +D   E+SSTEGVFVPTPG+ HTS  +PGPS++S  ++SP 
Sbjct: 45  SSSSHAPNIPETIVSDMDSNDLDDESSSTEGVFVPTPGIHHTSNIQPGPSIHSPFIRSPI 104

Query: 113 PHSTSSSLKNDPASPPADETAALERGTDVHNDDDELDPVIPKVNTCEIPVDVDVDNTLAA 172
                S      A  P + +      TDV+ND+DEL+P  PKV++ E   DV  DN L A
Sbjct: 105 SEPLPSKPNTAHAIVPGEVSIEPLVRTDVYNDEDELNPPNPKVHSEEFS-DV-ADNNLTA 164

Query: 173 PTESPAFPEISRPAKKKLQQN 194
              S A P  S+PAKKK QQN
Sbjct: 165 SPASYAIPVESQPAKKKSQQN 183

[Close]

BLAST of MELO3C016615 vs. NCBI nr
Match: gi|659127352|ref|XP_008463658.1| (PREDICTED: uncharacterized protein LOC103501750 [Cucumis melo])

HSP 1 Score: 42.0 bits (97), Expect = 1.4e+00
Identity = 51/198 (25.76%), Postives = 74/198 (37.37%), Query Frame = 1


Query: 32  MRGRQLESTQLRRPYCLSFKKSQKTFVPDVAVERPIDAPVSDHAQENSSTEGVFVPTPGL 91
           MRGR+ ++T  RRPY L  +KSQ              A VS    E S  E V  P P  
Sbjct: 1   MRGRRFKNTPPRRPYRLPSEKSQ--------------AEVSSRLSE-SMPETVDSPNPTS 60

Query: 92  QHTSTFEPGPSLYSSLVQSPTPHSTSSSLKNDPASPPADETAALERGTDVHND---DDEL 151
             +       ++ S +  +     +SS+      +P    T+ ++ G  +H+        
Sbjct: 61  SSSHAPNIPETIVSDMDSNDLDDESSSTEGVFVPTPGIHHTSNIQPGPSIHSPFIRSPIS 120

Query: 152 DPVIPKVNTCE--IPVDVDV-------------------------------DNTLAAPTE 194
           +P+  K NT    +P +V +                               DN L A   
Sbjct: 121 EPLPSKPNTAHAIVPGEVSIEPLVRTDVYNDEDELNPPNPKVHSEEFSDVADNNLTASPA 180

HSP 2 Score: 97.4 bits (241), Expect = 2.8e-17
Identity = 69/202 (34.16%), Postives = 104/202 (51.49%), Query Frame = 1


Query: 1   MVNTRKGSYAAKSSEDDLEARISSPSMHNMRMRGRQLESTQLRRPYCLSFKKSQKTFVPD 60
           MVNTRKG+Y  KSS++  EA     +MH         E          S  ++    + D
Sbjct: 1   MVNTRKGTYTGKSSKEVHEAPSPKATMHGPVQEDAGFEGAAKDAKTRSSVFEAH---LSD 60

Query: 61  VAVERPIDAPVSDHAQENSSTEGVFVPTPGLQHTSTFEPGPSLYSSLVQSPTPHSTSSSL 120
           +  +   D P++ H+Q +SS++GVF+PTPG  HTS  EP PS YSS ++S  P  T+++ 
Sbjct: 61  MDFDDLDDIPLALHSQGSSSSKGVFIPTPGFHHTSVIEPIPSHYSSPIRSSIPDKTTTTD 120

Query: 121 KN-DPASPPADETAALERGTDVHNDDDEL--DPVIPKVNTCEIPVDVDVDNTLAAPTESP 180
            + D A    DE+ A E  TDV +D+     D V+  VNT +      +D+ +     + 
Sbjct: 121 SHVDLARASVDESVATEGRTDVCDDEPPAGDDDVVESVNTDDHNDKFSIDDNVDQGAHND 180

Query: 181 AFPEI------SRPAKKKLQQN 194
           + PE       SR A+KK+Q+N
Sbjct: 181 SQPETQLVREESRQARKKVQKN 199

The following BLAST results are available for this feature:

BLAST of MELO3C016615 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBC0_CUCME	5.9e-38	46.72	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCP1_CUCME	4.7e-19	46.43	Envelope-like protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of MELO3C016615 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307135897\|gb\|ADN33761.1\|	8.5e-38	46.72	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|659123177\|ref\|XP_008461533.1\|	7.5e-26	38.03	PREDICTED: uncharacterized protein LOC103500104 [Cucumis melo]	[more]
gi\|307136434\|gb\|ADN34240.1\|	6.8e-19	46.43	envelope-like protein [Cucumis melo subsp. melo]	[more]
gi\|659127352\|ref\|XP_008463658.1\|	1.2e-18	43.26	PREDICTED: uncharacterized protein LOC103501750 [Cucumis melo]	[more]
gi\|659127352\|ref\|XP_008463658.1\|	1.4e+00	25.76	PREDICTED: uncharacterized protein LOC103501750 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C016615T1	MELO3C016615T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C016615	Cucurbita maxima (Rimu)	cmameB292
MELO3C016615	Cucurbita maxima (Rimu)	cmameB689
MELO3C016615	Cucurbita moschata (Rifu)	cmomeB293
MELO3C016615	Cucurbita moschata (Rifu)	cmomeB680
MELO3C016615	Wild cucumber (PI 183967)	cpimeB242
MELO3C016615	Cucumber (Chinese Long) v2	cumeB244
MELO3C016615	Watermelon (Charleston Gray)	mewcgB416
MELO3C016615	Watermelon (97103) v1	mewmB455
MELO3C016615	Cucurbita pepo (Zucchini)	cpemeB014
MELO3C016615	Cucurbita pepo (Zucchini)	cpemeB409
MELO3C016615	Bottle gourd (USVL1VR-Ls)	lsimeB380
MELO3C016615	Cucumber (Gy14) v2	cgybmeB211
MELO3C016615	Silver-seed gourd	carmeB0670
MELO3C016615	Silver-seed gourd	carmeB0790
MELO3C016615	Watermelon (97103) v2	mewmbB431
MELO3C016615	Cucumber (Chinese Long) v3	cucmeB248
MELO3C016615	Wax gourd	mewgoB511