MELO3C016600 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C016600
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Pol polyprotein
Location	chr6 : 28145665 .. 28145964 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGAGACCAAAATGATCAATGAGTTCACAGGAACAATTAGTGGTCCAACAAGCAAGTTCTTCACACTCAATATTGCACTTGAAGATTCATCATTGGTCAAGAAACCCCTCGACTCCATCCCCTATAAATATTTTCCCATTGTCGCCAAAATCGAGCAATTCCTAGATCTCCAAACCATGCCGTTTGAAGAAGCGATCGGAGGAATGAAGGTGTATGAGGAATGGATAGTGCGACTCCTTGGAAACAACAACAACACTGATGGACAACTCCTTGGTGAACAAAGGGCGCGGATCTAG

mRNA sequence

ATGAAGGAGACCAAAATGATCAATGAGTTCACAGGAACAATTAGTGGTCCAACAAGCAAGTTCTTCACACTCAATATTGCACTTGAAGATTCATCATTGGTCAAGAAACCCCTCGACTCCATCCCCTATAAATATTTTCCCATTGTCGCCAAAATCGAGCAATTCCTAGATCTCCAAACCATGCCGTTTGAAGAAGCGATCGGAGGAATGAAGGTGTATGAGGAATGGATAGTGCGACTCCTTGGAAACAACAACAACACTGATGGACAACTCCTTGGTGAACAAAGGGCGCGGATCTAG

Coding sequence (CDS)

ATGAAGGAGACCAAAATGATCAATGAGTTCACAGGAACAATTAGTGGTCCAACAAGCAAGTTCTTCACACTCAATATTGCACTTGAAGATTCATCATTGGTCAAGAAACCCCTCGACTCCATCCCCTATAAATATTTTCCCATTGTCGCCAAAATCGAGCAATTCCTAGATCTCCAAACCATGCCGTTTGAAGAAGCGATCGGAGGAATGAAGGTGTATGAGGAATGGATAGTGCGACTCCTTGGAAACAACAACAACACTGATGGACAACTCCTTGGTGAACAAAGGGCGCGGATCTAG

Protein sequence

MKETKMINEFTGTISGPTSKFFTLNIALEDSSLVKKPLDSIPYKYFPIVAKIEQFLDLQTMPFEEAIGGMKVYEEWIVRLLGNNNNTDGQLLGEQRARI*

Homology

[Close]

BLAST of MELO3C016600 vs. TrEMBL
Match: Q0IZT5_ORYSJ (Os09g0551200 protein OS=Oryza sativa subsp. japonica GN=Os09g0551200 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.8e-14
Identity = 46/92 (50.00%), Postives = 60/92 (65.22%), Query Frame = 1


Query: 1   MKETKMINEFTGTISGPTSKFFTLNIALEDSSLVKKPLDSIPYKYFPIVAKIEQFLDLQT 60
           MK+T+ I+EF G ISG  +    L   + D  LVKK LDS+P K+  I+A IEQF DL T
Sbjct: 130 MKKTETIDEFAGKISGLANAMSGLGATMTDDELVKKLLDSVPEKFLHIIAAIEQFCDLDT 189

Query: 61  MPFEEAIGGMKVYEEWIVRLLGNNNNTDGQLL 93
           MPFEEAIG +K +EE   R+  +++N   QLL
Sbjct: 190 MPFEEAIGRLKAFEE---RIRKHSDNDGEQLL 218

[Close]

BLAST of MELO3C016600 vs. TrEMBL
Match: Q2QVG3_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g12910 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 8.9e-14
Identity = 46/92 (50.00%), Postives = 60/92 (65.22%), Query Frame = 1


Query: 1   MKETKMINEFTGTISGPTSKFFTLNIALEDSSLVKKPLDSIPYKYFPIVAKIEQFLDLQT 60
           MK+T+ I+EF G ISG  +    L   + D  LVKK LDS+P K+  I+A IEQF DL T
Sbjct: 121 MKKTETIDEFAGKISGLANAMSGLGATMTDDELVKKLLDSVPEKFLHIIAAIEQFCDLDT 180

Query: 61  MPFEEAIGGMKVYEEWIVRLLGNNNNTDGQLL 93
           MPFEEAIG +K +EE   R+  +++N   QLL
Sbjct: 181 MPFEEAIGRLKAFEE---RIRKHSDNYGEQLL 209

[Close]

BLAST of MELO3C016600 vs. TrEMBL
Match: Q2QUP7_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os12g15530 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.5e-13
Identity = 40/77 (51.95%), Postives = 54/77 (70.13%), Query Frame = 1


Query: 1   MKETKMINEFTGTISGPTSKFFTLNIALEDSSLVKKPLDSIPYKYFPIVAKIEQFLDLQT 60
           MK+T+ I+EF G ISG  +K   L + ++D   VKK LDS+P K+  ++A IEQF DL +
Sbjct: 543 MKDTESIDEFAGKISGLANKLSDLGVTMDDDEQVKKLLDSVPDKFLHVIAAIEQFSDLDS 602

Query: 61  MPFEEAIGGMKVYEEWI 78
           MPF+EAIG +K YEE I
Sbjct: 603 MPFDEAIGRLKAYEERI 619

[Close]

BLAST of MELO3C016600 vs. TrEMBL
Match: Q0JH75_ORYSJ (Os01g0879800 protein OS=Oryza sativa subsp. japonica GN=Os01g0879800 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.5e-13
Identity = 40/77 (51.95%), Postives = 54/77 (70.13%), Query Frame = 1


Query: 1   MKETKMINEFTGTISGPTSKFFTLNIALEDSSLVKKPLDSIPYKYFPIVAKIEQFLDLQT 60
           MK+T+ I+EF G ISG  +K   L + ++D   VKK LDS+P K+  ++A IEQF DL +
Sbjct: 130 MKDTESIDEFAGKISGLANKLSDLGVTMDDDEQVKKLLDSVPDKFLHVIAAIEQFSDLDS 189

Query: 61  MPFEEAIGGMKVYEEWI 78
           MPF+EAIG +K YEE I
Sbjct: 190 MPFDEAIGRLKAYEERI 206

[Close]

BLAST of MELO3C016600 vs. TrEMBL
Match: C6JSM1_SORBI (Putative uncharacterized protein Sb1475s002010 OS=Sorghum bicolor GN=Sb1475s002010 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.8e-13
Identity = 38/92 (41.30%), Postives = 63/92 (68.48%), Query Frame = 1


Query: 1   MKETKMINEFTGTISGPTSKFFTLNIALEDSSLVKKPLDSIPYKYFPIVAKIEQFLDLQT 60
           MK+ + ++++ G ++G + ++  L  +LED++LVKK  D++P +Y  ++A IEQF DLQT
Sbjct: 128 MKDEESLDQYVGRLTGMSVRYGNLGGSLEDAALVKKLFDTVPGRYIHVIAGIEQFYDLQT 187

Query: 61  MPFEEAIGGMKVYEEWIVRLLGNNNNTDGQLL 93
           M FE+A+G +K YEE   R +G   +  GQ+L
Sbjct: 188 MKFEDAVGRLKAYEERTRRGVGEGRSEAGQVL 219

[Close]

BLAST of MELO3C016600 vs. NCBI nr
Match: gi|778722274|ref|XP_011658449.1| (PREDICTED: uncharacterized protein LOC105436008 [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 8.6e-26
Identity = 65/92 (70.65%), Postives = 72/92 (78.26%), Query Frame = 1


Query: 1   MKETKMINEFTGTISGPTSKFFTLNIALEDSSLVKKPLDSIPYKYFPIVAKIEQFLDLQT 60
           MKET+ I+EF G IS   SKF TL +ALEDSSLVKK LDS+P KY  IV +IEQF DL+T
Sbjct: 118 MKETETIDEFAGKISKLASKFTTLGVALEDSSLVKKLLDSVPDKYLLIVTRIEQFQDLET 177

Query: 61  MPFEEAIGGMKVYEEWIVRLLGNNNNTDGQLL 93
           MPFEE IG M VYEE   +LLGNNNNTDGQLL
Sbjct: 178 MPFEETIGRMMVYEERTTQLLGNNNNTDGQLL 209

[Close]

BLAST of MELO3C016600 vs. NCBI nr
Match: gi|113632099|dbj|BAF25780.1| (Os09g0551200 [Oryza sativa Japonica Group])

HSP 1 Score: 84.7 bits (208), Expect = 9.8e-14
Identity = 46/92 (50.00%), Postives = 60/92 (65.22%), Query Frame = 1


Query: 1   MKETKMINEFTGTISGPTSKFFTLNIALEDSSLVKKPLDSIPYKYFPIVAKIEQFLDLQT 60
           MK+T+ I+EF G ISG  +    L   + D  LVKK LDS+P K+  I+A IEQF DL T
Sbjct: 130 MKKTETIDEFAGKISGLANAMSGLGATMTDDELVKKLLDSVPEKFLHIIAAIEQFCDLDT 189

Query: 61  MPFEEAIGGMKVYEEWIVRLLGNNNNTDGQLL 93
           MPFEEAIG +K +EE   R+  +++N   QLL
Sbjct: 190 MPFEEAIGRLKAFEE---RIRKHSDNDGEQLL 218

[Close]

BLAST of MELO3C016600 vs. NCBI nr
Match: gi|77553519|gb|ABA96315.1| (retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group])

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-13
Identity = 46/92 (50.00%), Postives = 60/92 (65.22%), Query Frame = 1


Query: 1   MKETKMINEFTGTISGPTSKFFTLNIALEDSSLVKKPLDSIPYKYFPIVAKIEQFLDLQT 60
           MK+T+ I+EF G ISG  +    L   + D  LVKK LDS+P K+  I+A IEQF DL T
Sbjct: 121 MKKTETIDEFAGKISGLANAMSGLGATMTDDELVKKLLDSVPEKFLHIIAAIEQFCDLDT 180

Query: 61  MPFEEAIGGMKVYEEWIVRLLGNNNNTDGQLL 93
           MPFEEAIG +K +EE   R+  +++N   QLL
Sbjct: 181 MPFEEAIGRLKAFEE---RIRKHSDNYGEQLL 209

[Close]

BLAST of MELO3C016600 vs. NCBI nr
Match: gi|113534520|dbj|BAF06903.1| (Os01g0879800 [Oryza sativa Japonica Group])

HSP 1 Score: 83.6 bits (205), Expect = 2.2e-13
Identity = 40/77 (51.95%), Postives = 54/77 (70.13%), Query Frame = 1


Query: 1   MKETKMINEFTGTISGPTSKFFTLNIALEDSSLVKKPLDSIPYKYFPIVAKIEQFLDLQT 60
           MK+T+ I+EF G ISG  +K   L + ++D   VKK LDS+P K+  ++A IEQF DL +
Sbjct: 130 MKDTESIDEFAGKISGLANKLSDLGVTMDDDEQVKKLLDSVPDKFLHVIAAIEQFSDLDS 189

Query: 61  MPFEEAIGGMKVYEEWI 78
           MPF+EAIG +K YEE I
Sbjct: 190 MPFDEAIGRLKAYEERI 206

[Close]

BLAST of MELO3C016600 vs. NCBI nr
Match: gi|77554492|gb|ABA97288.1| (retrotransposon protein, putative, Ty1-copia subclass, expressed [Oryza sativa Japonica Group])

HSP 1 Score: 83.6 bits (205), Expect = 2.2e-13
Identity = 40/77 (51.95%), Postives = 54/77 (70.13%), Query Frame = 1


Query: 1   MKETKMINEFTGTISGPTSKFFTLNIALEDSSLVKKPLDSIPYKYFPIVAKIEQFLDLQT 60
           MK+T+ I+EF G ISG  +K   L + ++D   VKK LDS+P K+  ++A IEQF DL +
Sbjct: 543 MKDTESIDEFAGKISGLANKLSDLGVTMDDDEQVKKLLDSVPDKFLHVIAAIEQFSDLDS 602

Query: 61  MPFEEAIGGMKVYEEWI 78
           MPF+EAIG +K YEE I
Sbjct: 603 MPFDEAIGRLKAYEERI 619

The following BLAST results are available for this feature:

BLAST of MELO3C016600 vs. TrEMBL


Match Name	E-value	Identity	Description
Q0IZT5_ORYSJ	6.8e-14	50.00	Os09g0551200 protein OS=Oryza sativa subsp. japonica GN=Os09g0551200 PE=4 SV=1	[more]
Q2QVG3_ORYSJ	8.9e-14	50.00	Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. jap...	[more]
Q2QUP7_ORYSJ	1.5e-13	51.95	Retrotransposon protein, putative, Ty1-copia subclass, expressed OS=Oryza sativa...	[more]
Q0JH75_ORYSJ	1.5e-13	51.95	Os01g0879800 protein OS=Oryza sativa subsp. japonica GN=Os01g0879800 PE=4 SV=1	[more]
C6JSM1_SORBI	5.8e-13	41.30	Putative uncharacterized protein Sb1475s002010 OS=Sorghum bicolor GN=Sb1475s0020...	[more]

BLAST of MELO3C016600 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778722274\|ref\|XP_011658449.1\|	8.6e-26	70.65	PREDICTED: uncharacterized protein LOC105436008 [Cucumis sativus]	[more]
gi\|113632099\|dbj\|BAF25780.1\|	9.8e-14	50.00	Os09g0551200 [Oryza sativa Japonica Group]	[more]
gi\|77553519\|gb\|ABA96315.1\|	1.3e-13	50.00	retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Gro...	[more]
gi\|113534520\|dbj\|BAF06903.1\|	2.2e-13	51.95	Os01g0879800 [Oryza sativa Japonica Group]	[more]
gi\|77554492\|gb\|ABA97288.1\|	2.2e-13	51.95	retrotransposon protein, putative, Ty1-copia subclass, expressed [Oryza sativa J...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
cellular_component	GO:0031410	cytoplasmic vesicle
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C016600T1	MELO3C016600T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..98 score: 5.3
None	No IPR available	PANTHER	PTHR11439:SF172	SUBFAMILY NOT NAMED	coord: 1..98 score: 5.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C016600	Watermelon (97103) v2	mewmbB431
MELO3C016600	Cucumber (Chinese Long) v3	cucmeB248
MELO3C016600	Wax gourd	mewgoB511
MELO3C016600	Cucumber (Gy14) v1	cgymeB076
MELO3C016600	Cucurbita maxima (Rimu)	cmameB292
MELO3C016600	Cucurbita maxima (Rimu)	cmameB689
MELO3C016600	Cucurbita moschata (Rifu)	cmomeB293
MELO3C016600	Cucurbita moschata (Rifu)	cmomeB680
MELO3C016600	Wild cucumber (PI 183967)	cpimeB242
MELO3C016600	Cucumber (Chinese Long) v2	cumeB244
MELO3C016600	Watermelon (Charleston Gray)	mewcgB416
MELO3C016600	Watermelon (97103) v1	mewmB455
MELO3C016600	Cucurbita pepo (Zucchini)	cpemeB014
MELO3C016600	Cucurbita pepo (Zucchini)	cpemeB409
MELO3C016600	Bottle gourd (USVL1VR-Ls)	lsimeB380
MELO3C016600	Cucumber (Gy14) v2	cgybmeB211
MELO3C016600	Silver-seed gourd	carmeB0670