MELO3C016572 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C016572
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Protein kinase
Location	chr6 : 27396761 .. 27397050 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAGTTTATGAGTACATGCCAAACAAAAGTTTGGACTTCTTGTTATTTGGTAAAAATCTCTCAACTCTTTAAATTTACCTAGTTTGTCCTCTATTAAATAAAAGCCTATTACATTTTGATCAAAACGTTAATCTTACACCTTCAACATAACATGGTTGGATCGAGTAAGTTTGAAATCGACAGATGAAAGGCAACATCAACTATTAAACTGGTCGCAACAACACCACATTGTCGATCTGCGGAATTGCAAGAGGACTCCTTTTATCTTCATCAAGATTCTAGATTGA

mRNA sequence

ATGCTAGTTTATGAGTACATGCCAAACAAAAGTTTGGACTTCTTGTTATTTGATGAAAGGCAACATCAACTATTAAACTGGTCGCAACAACACCACATTGTCGATCTGCGGAATTGCAAGAGGACTCCTTTTATCTTCATCAAGATTCTAGATTGA

Coding sequence (CDS)

ATGCTAGTTTATGAGTACATGCCAAACAAAAGTTTGGACTTCTTGTTATTTGATGAAAGGCAACATCAACTATTAAACTGGTCGCAACAACACCACATTGTCGATCTGCGGAATTGCAAGAGGACTCCTTTTATCTTCATCAAGATTCTAGATTGA

Protein sequence

MLVYEYMPNKSLDFLLFDERQHQLLNWSQQHHIVDLRNCKRTPFIFIKILD*

Homology

[Close]

BLAST of MELO3C016572 vs. Swiss-Prot
Match: CRK42_ARATH (Cysteine-rich receptor-like protein kinase 42 OS=Arabidopsis thaliana GN=CRK42 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 3.9e-06
Identity = 22/34 (64.71%), Postives = 27/34 (79.41%), Query Frame = 1


Query: 1   MLVYEYMPNKSLDFLLFDERQHQLLNWSQQHHIV 35
           +LVYEY+PNKSLD  LFDE Q ++LNWSQ+ +I+
Sbjct: 385 LLVYEYVPNKSLDQFLFDESQSKVLNWSQRLNII 418

[Close]

BLAST of MELO3C016572 vs. Swiss-Prot
Match: SD11_ARATH (G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 OS=Arabidopsis thaliana GN=SD11 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 6.7e-06
Identity = 20/35 (57.14%), Postives = 27/35 (77.14%), Query Frame = 1


Query: 1   MLVYEYMPNKSLDFLLFDERQHQLLNWSQQHHIVD 36
           ML+YEYMPNKSLDF +FDER+   L+W ++ +I++
Sbjct: 570 MLIYEYMPNKSLDFFIFDERRSTELDWKKRMNIIN 604

[Close]

BLAST of MELO3C016572 vs. Swiss-Prot
Match: B120_ARATH (G-type lectin S-receptor-like serine/threonine-protein kinase B120 OS=Arabidopsis thaliana GN=B120 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 6.7e-06
Identity = 21/35 (60.00%), Postives = 25/35 (71.43%), Query Frame = 1


Query: 1   MLVYEYMPNKSLDFLLFDERQHQLLNWSQQHHIVD 36
           MLVYEYMPNKSLDF LFDE +  L++W  +  I++
Sbjct: 599 MLVYEYMPNKSLDFFLFDETKQALIDWKLRFSIIE 633

[Close]

BLAST of MELO3C016572 vs. TrEMBL
Match: A0A067L4F6_JATCU (Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_00736 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 6.1e-06
Identity = 21/35 (60.00%), Postives = 31/35 (88.57%), Query Frame = 1


Query: 1   MLVYEYMPNKSLDFLLFDERQHQLLNWSQQHHIVD 36
           ML+YE+MPNKSLDF +FD RQ ++L+W ++HHI++
Sbjct: 577 MLIYEFMPNKSLDFFIFDRRQSKILDWPKRHHIIN 611

[Close]

BLAST of MELO3C016572 vs. TAIR10
Match: AT5G40380.1 (AT5G40380.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 42)

HSP 1 Score: 51.2 bits (121), Expect = 2.2e-07
Identity = 22/34 (64.71%), Postives = 27/34 (79.41%), Query Frame = 1


Query: 1   MLVYEYMPNKSLDFLLFDERQHQLLNWSQQHHIV 35
           +LVYEY+PNKSLD  LFDE Q ++LNWSQ+ +I+
Sbjct: 385 LLVYEYVPNKSLDQFLFDESQSKVLNWSQRLNII 418

[Close]

BLAST of MELO3C016572 vs. TAIR10
Match: AT4G27300.1 (AT4G27300.1 S-locus lectin protein kinase family protein)

HSP 1 Score: 50.4 bits (119), Expect = 3.8e-07
Identity = 20/35 (57.14%), Postives = 27/35 (77.14%), Query Frame = 1


Query: 1   MLVYEYMPNKSLDFLLFDERQHQLLNWSQQHHIVD 36
           ML+YEYMPNKSLDF +FDER+   L+W ++ +I++
Sbjct: 570 MLIYEYMPNKSLDFFIFDERRSTELDWKKRMNIIN 604

[Close]

BLAST of MELO3C016572 vs. TAIR10
Match: AT4G21390.1 (AT4G21390.1 S-locus lectin protein kinase family protein)

HSP 1 Score: 50.4 bits (119), Expect = 3.8e-07
Identity = 21/35 (60.00%), Postives = 25/35 (71.43%), Query Frame = 1


Query: 1   MLVYEYMPNKSLDFLLFDERQHQLLNWSQQHHIVD 36
           MLVYEYMPNKSLDF LFDE +  L++W  +  I++
Sbjct: 599 MLVYEYMPNKSLDFFLFDETKQALIDWKLRFSIIE 633

[Close]

BLAST of MELO3C016572 vs. TAIR10
Match: AT1G11300.1 (AT1G11300.1 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding)

HSP 1 Score: 47.4 bits (111), Expect = 3.2e-06
Identity = 19/35 (54.29%), Postives = 26/35 (74.29%), Query Frame = 1


Query: 1    MLVYEYMPNKSLDFLLFDERQHQLLNWSQQHHIVD 36
            MLVYE+MP KSLDF +FD R+ +LL+W+ +  I++
Sbjct: 1409 MLVYEFMPKKSLDFYIFDPREAKLLDWNTRFEIIN 1443

HSP 2 Score: 47.0 bits (110), Expect = 4.2e-06
Identity = 19/35 (54.29%), Postives = 26/35 (74.29%), Query Frame = 1


Query: 1   MLVYEYMPNKSLDFLLFDERQHQLLNWSQQHHIVD 36
           MLVYE+MP KSLD+ LFD R+ +LL+W  + +I++
Sbjct: 579 MLVYEFMPKKSLDYYLFDSRRAKLLDWKTRFNIIN 613

[Close]

BLAST of MELO3C016572 vs. TAIR10
Match: AT4G23240.1 (AT4G23240.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 16)

HSP 1 Score: 47.4 bits (111), Expect = 3.2e-06
Identity = 19/34 (55.88%), Postives = 25/34 (73.53%), Query Frame = 1


Query: 1   MLVYEYMPNKSLDFLLFDERQHQLLNWSQQHHIV 35
           +LVYEYMPNKSLD+ LFD R+   L+W  +++I+
Sbjct: 95  ILVYEYMPNKSLDYFLFDHRRRGQLDWRTRYNII 128

[Close]

BLAST of MELO3C016572 vs. NCBI nr
Match: gi|778688389|ref|XP_011652740.1| (PREDICTED: uncharacterized protein LOC101210952 [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 1.0e-06
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 1


Query: 1    MLVYEYMPNKSLDFLLFDERQHQLLNWSQQHHIV 35
            MLVYEYMPNKSLDF +FD  Q QLL+WSQ++HI+
Sbjct: 1412 MLVYEYMPNKSLDFFIFDRTQRQLLDWSQRYHII 1445

[Close]

BLAST of MELO3C016572 vs. NCBI nr
Match: gi|778688389|ref|XP_011652740.1| (PREDICTED: uncharacterized protein LOC101210952 [Cucumis sativus])

HSP 1 Score: 53.9 bits (128), Expect = 9.6e-05
Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 1


Query: 1   MLVYEYMPNKSLDFLLFDERQHQLLNWSQQHHIV 35
           MLVYEYMPNKSLDF +F++ Q QLL+WS ++ I+
Sbjct: 573 MLVYEYMPNKSLDFFIFNKTQRQLLSWSNRYRII 606

HSP 2 Score: 60.5 bits (145), Expect = 1.0e-06
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 1


Query: 1   MLVYEYMPNKSLDFLLFDERQHQLLNWSQQHHIV 35
           MLVYEYMPNKSLDF +FD  Q QLL+WSQ++HI+
Sbjct: 600 MLVYEYMPNKSLDFFIFDRTQRQLLDWSQRYHII 633

[Close]

BLAST of MELO3C016572 vs. NCBI nr
Match: gi|802586659|ref|XP_012070692.1| (PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas])

HSP 1 Score: 57.4 bits (137), Expect = 8.7e-06
Identity = 21/35 (60.00%), Postives = 31/35 (88.57%), Query Frame = 1


Query: 1   MLVYEYMPNKSLDFLLFDERQHQLLNWSQQHHIVD 36
           ML+YE+MPNKSLDF +FD RQ ++L+W ++HHI++
Sbjct: 577 MLIYEFMPNKSLDFFIFDRRQSKILDWPKRHHIIN 611

[Close]

BLAST of MELO3C016572 vs. NCBI nr
Match: gi|659102788|ref|XP_008452314.1| (PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Cucumis melo])

HSP 1 Score: 57.4 bits (137), Expect = 8.7e-06
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 1


Query: 1   MLVYEYMPNKSLDFLLFDERQHQLLNWSQQHHIV 35
           MLVYEYMPNKSLDF +FD  Q QLL+WSQ++ I+
Sbjct: 571 MLVYEYMPNKSLDFFIFDRTQRQLLDWSQRYRII 604

The following BLAST results are available for this feature:

BLAST of MELO3C016572 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CRK42_ARATH	3.9e-06	64.71	Cysteine-rich receptor-like protein kinase 42 OS=Arabidopsis thaliana GN=CRK42 P...	[more]
SD11_ARATH	6.7e-06	57.14	G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 OS=Arabidops...	[more]
B120_ARATH	6.7e-06	60.00	G-type lectin S-receptor-like serine/threonine-protein kinase B120 OS=Arabidopsi...	[more]

BLAST of MELO3C016572 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067L4F6_JATCU	6.1e-06	60.00	Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_00736 PE=3 SV=1	[more]

BLAST of MELO3C016572 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G40380.1	2.2e-07	64.71	cysteine-rich RLK (RECEPTOR-like protein kinase) 42	[more]
AT4G27300.1	3.8e-07	57.14	S-locus lectin protein kinase family protein	[more]
AT4G21390.1	3.8e-07	60.00	S-locus lectin protein kinase family protein	[more]
AT1G11300.1	3.2e-06	54.29	protein serine/threonine kinases;protein kinases;ATP binding;sugar b...	[more]
AT4G23240.1	3.2e-06	55.88	cysteine-rich RLK (RECEPTOR-like protein kinase) 16	[more]

BLAST of MELO3C016572 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778688389\|ref\|XP_011652740.1\|	1.0e-06	73.53	PREDICTED: uncharacterized protein LOC101210952 [Cucumis sativus]	[more]
gi\|778688389\|ref\|XP_011652740.1\|	9.6e-05	64.71	PREDICTED: uncharacterized protein LOC101210952 [Cucumis sativus]	[more]
gi\|802586659\|ref\|XP_012070692.1\|	8.7e-06	60.00	PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g272...	[more]
gi\|659102788\|ref\|XP_008452314.1\|	8.7e-06	70.59	PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g272...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0048544	recognition of pollen
biological_process	GO:0009069	serine family amino acid metabolic process
cellular_component	GO:0031410	cytoplasmic vesicle
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0004674	protein serine/threonine kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C016572T1	MELO3C016572T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR27002	FAMILY NOT NAMED	coord: 1..34 score: 2.3
None	No IPR available	PANTHER	PTHR27002:SF95	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE B120	coord: 1..34 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C016572	Bhi11G000575	Wax gourd	mewgoB503

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C016572	Watermelon (97103) v2	mewmbB433
MELO3C016572	Wax gourd	mewgoB511
MELO3C016572	Melon (DHL92) v3.5.1	memeB073
MELO3C016572	Cucumber (Gy14) v1	cgymeB076
MELO3C016572	Cucumber (Gy14) v1	cgymeB200
MELO3C016572	Cucurbita maxima (Rimu)	cmameB292
MELO3C016572	Cucurbita maxima (Rimu)	cmameB689
MELO3C016572	Cucurbita moschata (Rifu)	cmomeB285
MELO3C016572	Cucurbita moschata (Rifu)	cmomeB680
MELO3C016572	Wild cucumber (PI 183967)	cpimeB078
MELO3C016572	Wild cucumber (PI 183967)	cpimeB242
MELO3C016572	Cucumber (Chinese Long) v2	cumeB077
MELO3C016572	Cucumber (Chinese Long) v2	cumeB244
MELO3C016572	Watermelon (97103) v1	mewmB457
MELO3C016572	Watermelon (Charleston Gray)	mewcgB416
MELO3C016572	Watermelon (Charleston Gray)	mewcgB426
MELO3C016572	Watermelon (97103) v1	mewmB458
MELO3C016572	Cucurbita pepo (Zucchini)	cpemeB186
MELO3C016572	Cucurbita pepo (Zucchini)	cpemeB409
MELO3C016572	Bottle gourd (USVL1VR-Ls)	lsimeB380
MELO3C016572	Cucumber (Gy14) v2	cgybmeB069
MELO3C016572	Cucumber (Gy14) v2	cgybmeB211
MELO3C016572	Silver-seed gourd	carmeB0223
MELO3C016572	Silver-seed gourd	carmeB0670
MELO3C016572	Watermelon (97103) v2	mewmbB431
MELO3C016572	Cucumber (Chinese Long) v3	cucmeB083
MELO3C016572	Cucumber (Chinese Long) v3	cucmeB248