MELO3C016559 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C016559
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Cullin 1C
Location	chr6 : 27275509 .. 27276078 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGTGGTGTTGTTTGTTGTGTGCATCCCTCTTCCGCTTGTGGATGAGAAAAAGAAAGTCATTGGAGATGTTGACAAGGATCGAAGGTATGTGACTTGACCATGAGATACGTGAACTTGAAGTAAGGACATGCATCGTTCTGAGCTTTGTAAGAGATCAAGAAATCTTCGAAAATCGTTTAGAGCTTTGATAGACATAGGGTATGTGACTTCCATCAACGCTCGGTGCAATTCATAACATTTGTATACTTCTACCCTTTTTTGAAGTGTATTTTTGTGTGTACGCTCTCAAGGAAGCTTTTGAAGTTTTTTGCAATAAGGGTGTTGCTAGAAGTTCTAGTATAGAATTTCTTGTTACCTTTTGTGATAACATCCTTAAGAAAAGTGAGAGAGAGAAGTTGAGTGATAAAAAAATCAAGGAGACACTTGAGAAGGTAATTTTTCTATTTATTAATCATTTGAAGTTCATTTAGTGTTGTAACTTTGGATTTCATATGATTTAAAAATACAGGTTGTGAAGTTGTTAGCATACATTGACAAAGATCTGTTTGCTGAATTCTATAGGTGA

mRNA sequence

ATGAATGTGGTGTTGTTTGTTGTGTGCATCCCTCTTCCGCTTGTGGATGAGAAAAAGAAAGTCATTGGAGATGTTGACAAGGATCGAAGGTATGAAGCTTTTGAAGTTTTTTGCAATAAGGGTGTTGCTAGAAGTTCTAGTATAGAATTTCTTGTTACCTTTTGTGATAACATCCTTAAGAAAAGTGAGAGAGAGAAGTTGAGTGATAAAAAAATCAAGGAGACACTTGAGAAGGTTGTGAAGTTGTTAGCATACATTGACAAAGATCTGTTTGCTGAATTCTATAGGTGA

Coding sequence (CDS)

ATGAATGTGGTGTTGTTTGTTGTGTGCATCCCTCTTCCGCTTGTGGATGAGAAAAAGAAAGTCATTGGAGATGTTGACAAGGATCGAAGGTATGAAGCTTTTGAAGTTTTTTGCAATAAGGGTGTTGCTAGAAGTTCTAGTATAGAATTTCTTGTTACCTTTTGTGATAACATCCTTAAGAAAAGTGAGAGAGAGAAGTTGAGTGATAAAAAAATCAAGGAGACACTTGAGAAGGTTGTGAAGTTGTTAGCATACATTGACAAAGATCTGTTTGCTGAATTCTATAGGTGA

Protein sequence

MNVVLFVVCIPLPLVDEKKKVIGDVDKDRRYEAFEVFCNKGVARSSSIEFLVTFCDNILKKSEREKLSDKKIKETLEKVVKLLAYIDKDLFAEFYR*

Homology

[Close]

BLAST of MELO3C016559 vs. Swiss-Prot
Match: CUL1_ARATH (Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-20
Identity = 52/66 (78.79%), Postives = 54/66 (81.82%), Query Frame = 1


Query: 32  EAFEVFCNKGVARSSSIEFLVTFCDNILKKSEREKLSDKKIKETLEKVVKLLAYI-DKDL 91
           EAFE+FCNK VA SSS E L TFCDNILKK   EKLSD+ I++TLEKVVKLLAYI DKDL
Sbjct: 369 EAFEIFCNKTVAGSSSAELLATFCDNILKKGGSEKLSDEAIEDTLEKVVKLLAYISDKDL 428

Query: 92  FAEFYR 97
           FAEFYR
Sbjct: 429 FAEFYR 434

HSP 2 Score: 41.2 bits (95), Expect = 7.6e-03
Identity = 18/22 (81.82%), Postives = 18/22 (81.82%), Query Frame = 1


Query: 10  IPLPLVDEKKKVIGDVDKDRRY 32
           IPLP VDE+KKV+ DVDKDRRY
Sbjct: 650 IPLPPVDERKKVVEDVDKDRRY 671

[Close]

BLAST of MELO3C016559 vs. Swiss-Prot
Match: CLL1_ARATH (Putative cullin-like protein 1 OS=Arabidopsis thaliana GN=At1g43140 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.6e-16
Identity = 47/67 (70.15%), Postives = 50/67 (74.63%), Query Frame = 1


Query: 32  EAFEVFCNKGVARSSSIEFLVTFCDNILK-KSEREKLSDKKIKETLEKVVKLLAYI-DKD 91
           EAFEVFCNK VA +SS E L T+CDNILK +   EKLSD+  + TLEKVV LL YI DKD
Sbjct: 374 EAFEVFCNKTVAGASSAEILATYCDNILKTRGGSEKLSDEATEITLEKVVNLLVYISDKD 433

Query: 92  LFAEFYR 97
           LFAEFYR
Sbjct: 434 LFAEFYR 440

HSP 2 Score: 41.2 bits (95), Expect = 7.6e-03
Identity = 28/83 (33.73%), Postives = 44/83 (53.01%), Query Frame = 1


Query: 10  IPLPLVDEKKKVIGDVDKDRRYEAFEVFCNKGVARSSSI---EFLVTFCDNILKKSEREK 69
           +PLP +DE+KKV+ DVDKDRRY          + +S  +   + LV+ C   L K  +  
Sbjct: 633 VPLPPMDERKKVVEDVDKDRRYAIDAALVR--IMKSRKVLAHQQLVSECVEHLSKMFKPD 692

Query: 70  LSDKKIKETLEKVVKLLAYIDKD 90
           +  K IK+ +E ++    Y+++D
Sbjct: 693 I--KMIKKRIEDLIN-RDYLERD 710

[Close]

BLAST of MELO3C016559 vs. Swiss-Prot
Match: CUL2_ARATH (Cullin-2 OS=Arabidopsis thaliana GN=CUL2 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-14
Identity = 45/67 (67.16%), Postives = 49/67 (73.13%), Query Frame = 1


Query: 32  EAFEVFCNKGVARSSSIEFLVTFCDNILKKSER-EKLSDKKIKETLEKVVKLLAYI-DKD 91
           EAFEVFCNK VA  SS E L T+CDNILK     EKL ++ ++ TLEKVVKLL YI DKD
Sbjct: 372 EAFEVFCNKTVAGVSSAEILATYCDNILKTGGGIEKLENEDLELTLEKVVKLLVYISDKD 431

Query: 92  LFAEFYR 97
           LFAEF+R
Sbjct: 432 LFAEFFR 438

HSP 2 Score: 40.8 bits (94), Expect = 9.9e-03
Identity = 27/83 (32.53%), Postives = 44/83 (53.01%), Query Frame = 1


Query: 10  IPLPLVDEKKKVIGDVDKDRRYEAFEVFCNKGVARSSSI---EFLVTFCDNILKKSEREK 69
           +PLP +DE+KK++ DVDKDRRY          + +S  +   + LV+ C   L K  +  
Sbjct: 654 VPLPPMDERKKIVEDVDKDRRYAIDAALVR--IMKSRKVLGHQQLVSECVEHLSKMFKPD 713

Query: 70  LSDKKIKETLEKVVKLLAYIDKD 90
           +  K IK+ +E ++    Y+++D
Sbjct: 714 I--KMIKKRIEDLIS-RDYLERD 731

[Close]

BLAST of MELO3C016559 vs. TrEMBL
Match: Q711G6_TOBAC (Cullin 1C (Fragment) OS=Nicotiana tabacum GN=cul1C PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 6.2e-20
Identity = 55/66 (83.33%), Postives = 57/66 (86.36%), Query Frame = 1


Query: 32  EAFEVFCNKGVARSSSIEFLVTFCDNILKKSEREKLSDKKIKETLEKVVKLLAYI-DKDL 91
           EAFEVFCNKGVA SSS E L TFCDNILKK   EKLSD+ I+ETLEKVVKLLAYI DKDL
Sbjct: 78  EAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEETLEKVVKLLAYISDKDL 137

Query: 92  FAEFYR 97
           FAEFYR
Sbjct: 138 FAEFYR 143

[Close]

BLAST of MELO3C016559 vs. TrEMBL
Match: Q711G6_TOBAC (Cullin 1C (Fragment) OS=Nicotiana tabacum GN=cul1C PE=2 SV=1)

HSP 1 Score: 40.4 bits (93), Expect = 1.4e+00
Identity = 19/22 (86.36%), Postives = 19/22 (86.36%), Query Frame = 1


Query: 10  IPLPLVDEKKKVIGDVDKDRRY 32
           IPLP  DEKKKVI DVDKDRRY
Sbjct: 359 IPLPPEDEKKKVIEDVDKDRRY 380

HSP 2 Score: 104.8 bits (260), Expect = 6.2e-20
Identity = 55/66 (83.33%), Postives = 57/66 (86.36%), Query Frame = 1


Query: 32  EAFEVFCNKGVARSSSIEFLVTFCDNILKKSEREKLSDKKIKETLEKVVKLLAYI-DKDL 91
           EAFEVFCNKGVA SSS E L TFCDNILKK   EKLSD+ I+ETLEKVVKLLAYI DKDL
Sbjct: 375 EAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEETLEKVVKLLAYICDKDL 434

Query: 92  FAEFYR 97
           FAEFYR
Sbjct: 435 FAEFYR 440

[Close]

BLAST of MELO3C016559 vs. TrEMBL
Match: A0A0A0KCC8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G197230 PE=3 SV=1)

HSP 1 Score: 42.7 bits (99), Expect = 2.9e-01
Identity = 20/22 (90.91%), Postives = 20/22 (90.91%), Query Frame = 1


Query: 10  IPLPLVDEKKKVIGDVDKDRRY 32
           IPLP VDEKKKVI DVDKDRRY
Sbjct: 656 IPLPPVDEKKKVIEDVDKDRRY 677

HSP 2 Score: 104.8 bits (260), Expect = 6.2e-20
Identity = 55/66 (83.33%), Postives = 57/66 (86.36%), Query Frame = 1


Query: 32  EAFEVFCNKGVARSSSIEFLVTFCDNILKKSEREKLSDKKIKETLEKVVKLLAYI-DKDL 91
           EAFEVFCNKGVA SSS E L TFCDNILKK   EKLSD+ I+ETLEKVVKLLAYI DKDL
Sbjct: 384 EAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEETLEKVVKLLAYISDKDL 443

Query: 92  FAEFYR 97
           FAEFYR
Sbjct: 444 FAEFYR 449

[Close]

BLAST of MELO3C016559 vs. TrEMBL
Match: W9RHF4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023551 PE=3 SV=1)

HSP 1 Score: 42.7 bits (99), Expect = 2.9e-01
Identity = 20/22 (90.91%), Postives = 20/22 (90.91%), Query Frame = 1


Query: 10  IPLPLVDEKKKVIGDVDKDRRY 32
           IPLP VDEKKKVI DVDKDRRY
Sbjct: 665 IPLPPVDEKKKVIEDVDKDRRY 686

HSP 2 Score: 104.8 bits (260), Expect = 6.2e-20
Identity = 55/66 (83.33%), Postives = 57/66 (86.36%), Query Frame = 1


Query: 32  EAFEVFCNKGVARSSSIEFLVTFCDNILKKSEREKLSDKKIKETLEKVVKLLAYI-DKDL 91
           EAFEVFCNKGVA SSS E L TFCDNILKK   EKLSD+ I+ETLEKVVKLLAYI DKDL
Sbjct: 375 EAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEETLEKVVKLLAYISDKDL 434

Query: 92  FAEFYR 97
           FAEFYR
Sbjct: 435 FAEFYR 440

[Close]

BLAST of MELO3C016559 vs. TrEMBL
Match: V4RG42_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004406mg PE=3 SV=1)

HSP 1 Score: 42.7 bits (99), Expect = 2.9e-01
Identity = 20/22 (90.91%), Postives = 20/22 (90.91%), Query Frame = 1


Query: 10  IPLPLVDEKKKVIGDVDKDRRY 32
           IPLP VDEKKKVI DVDKDRRY
Sbjct: 656 IPLPPVDEKKKVIEDVDKDRRY 677

HSP 2 Score: 104.8 bits (260), Expect = 6.2e-20
Identity = 55/66 (83.33%), Postives = 57/66 (86.36%), Query Frame = 1


Query: 32  EAFEVFCNKGVARSSSIEFLVTFCDNILKKSEREKLSDKKIKETLEKVVKLLAYI-DKDL 91
           EAFEVFCNKGVA SSS E L TFCDNILKK   EKLSD+ I+ETLEKVVKLLAYI DKDL
Sbjct: 375 EAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEETLEKVVKLLAYISDKDL 434

Query: 92  FAEFYR 97
           FAEFYR
Sbjct: 435 FAEFYR 440

[Close]

BLAST of MELO3C016559 vs. TAIR10
Match: AT4G02570.1 (AT4G02570.1 cullin 1)

HSP 1 Score: 100.1 bits (248), Expect = 7.7e-22
Identity = 52/66 (78.79%), Postives = 54/66 (81.82%), Query Frame = 1


Query: 32  EAFEVFCNKGVARSSSIEFLVTFCDNILKKSEREKLSDKKIKETLEKVVKLLAYI-DKDL 91
           EAFE+FCNK VA SSS E L TFCDNILKK   EKLSD+ I++TLEKVVKLLAYI DKDL
Sbjct: 369 EAFEIFCNKTVAGSSSAELLATFCDNILKKGGSEKLSDEAIEDTLEKVVKLLAYISDKDL 428

Query: 92  FAEFYR 97
           FAEFYR
Sbjct: 429 FAEFYR 434

HSP 2 Score: 41.2 bits (95), Expect = 4.3e-04
Identity = 18/22 (81.82%), Postives = 18/22 (81.82%), Query Frame = 1


Query: 10  IPLPLVDEKKKVIGDVDKDRRY 32
           IPLP VDE+KKV+ DVDKDRRY
Sbjct: 650 IPLPPVDERKKVVEDVDKDRRY 671

[Close]

BLAST of MELO3C016559 vs. TAIR10
Match: AT1G43140.1 (AT1G43140.1 Cullin family protein)

HSP 1 Score: 85.1 bits (209), Expect = 2.6e-17
Identity = 47/67 (70.15%), Postives = 50/67 (74.63%), Query Frame = 1


Query: 32  EAFEVFCNKGVARSSSIEFLVTFCDNILK-KSEREKLSDKKIKETLEKVVKLLAYI-DKD 91
           EAFEVFCNK VA +SS E L T+CDNILK +   EKLSD+  + TLEKVV LL YI DKD
Sbjct: 374 EAFEVFCNKTVAGASSAEILATYCDNILKTRGGSEKLSDEATEITLEKVVNLLVYISDKD 433

Query: 92  LFAEFYR 97
           LFAEFYR
Sbjct: 434 LFAEFYR 440

HSP 2 Score: 41.2 bits (95), Expect = 4.3e-04
Identity = 28/83 (33.73%), Postives = 44/83 (53.01%), Query Frame = 1


Query: 10  IPLPLVDEKKKVIGDVDKDRRYEAFEVFCNKGVARSSSI---EFLVTFCDNILKKSEREK 69
           +PLP +DE+KKV+ DVDKDRRY          + +S  +   + LV+ C   L K  +  
Sbjct: 633 VPLPPMDERKKVVEDVDKDRRYAIDAALVR--IMKSRKVLAHQQLVSECVEHLSKMFKPD 692

Query: 70  LSDKKIKETLEKVVKLLAYIDKD 90
           +  K IK+ +E ++    Y+++D
Sbjct: 693 I--KMIKKRIEDLIN-RDYLERD 710

[Close]

BLAST of MELO3C016559 vs. TAIR10
Match: AT1G02980.1 (AT1G02980.1 cullin 2)

HSP 1 Score: 80.5 bits (197), Expect = 6.3e-16
Identity = 45/67 (67.16%), Postives = 49/67 (73.13%), Query Frame = 1


Query: 32  EAFEVFCNKGVARSSSIEFLVTFCDNILKKSER-EKLSDKKIKETLEKVVKLLAYI-DKD 91
           EAFEVFCNK VA  SS E L T+CDNILK     EKL ++ ++ TLEKVVKLL YI DKD
Sbjct: 372 EAFEVFCNKTVAGVSSAEILATYCDNILKTGGGIEKLENEDLELTLEKVVKLLVYISDKD 431

Query: 92  LFAEFYR 97
           LFAEF+R
Sbjct: 432 LFAEFFR 438

HSP 2 Score: 40.8 bits (94), Expect = 5.6e-04
Identity = 27/83 (32.53%), Postives = 44/83 (53.01%), Query Frame = 1


Query: 10  IPLPLVDEKKKVIGDVDKDRRYEAFEVFCNKGVARSSSI---EFLVTFCDNILKKSEREK 69
           +PLP +DE+KK++ DVDKDRRY          + +S  +   + LV+ C   L K  +  
Sbjct: 654 VPLPPMDERKKIVEDVDKDRRYAIDAALVR--IMKSRKVLGHQQLVSECVEHLSKMFKPD 713

Query: 70  LSDKKIKETLEKVVKLLAYIDKD 90
           +  K IK+ +E ++    Y+++D
Sbjct: 714 I--KMIKKRIEDLIS-RDYLERD 731

[Close]

BLAST of MELO3C016559 vs. NCBI nr
Match: gi|703105670|ref|XP_010098303.1| (hypothetical protein L484_023551 [Morus notabilis])

HSP 1 Score: 104.8 bits (260), Expect = 8.9e-20
Identity = 55/66 (83.33%), Postives = 57/66 (86.36%), Query Frame = 1


Query: 32  EAFEVFCNKGVARSSSIEFLVTFCDNILKKSEREKLSDKKIKETLEKVVKLLAYI-DKDL 91
           EAFEVFCNKGVA SSS E L TFCDNILKK   EKLSD+ I+ETLEKVVKLLAYI DKDL
Sbjct: 384 EAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEETLEKVVKLLAYISDKDL 443

Query: 92  FAEFYR 97
           FAEFYR
Sbjct: 444 FAEFYR 449

[Close]

BLAST of MELO3C016559 vs. NCBI nr
Match: gi|703105670|ref|XP_010098303.1| (hypothetical protein L484_023551 [Morus notabilis])

HSP 1 Score: 42.7 bits (99), Expect = 4.1e-01
Identity = 20/22 (90.91%), Postives = 20/22 (90.91%), Query Frame = 1


Query: 10  IPLPLVDEKKKVIGDVDKDRRY 32
           IPLP VDEKKKVI DVDKDRRY
Sbjct: 665 IPLPPVDEKKKVIEDVDKDRRY 686

HSP 2 Score: 104.8 bits (260), Expect = 8.9e-20
Identity = 55/66 (83.33%), Postives = 57/66 (86.36%), Query Frame = 1


Query: 32  EAFEVFCNKGVARSSSIEFLVTFCDNILKKSEREKLSDKKIKETLEKVVKLLAYI-DKDL 91
           EAFEVFCNKGVA SSS E L TFCDNILKK   EKLSD+ I+ETLEKVVKLLAYI DKDL
Sbjct: 375 EAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEETLEKVVKLLAYICDKDL 434

Query: 92  FAEFYR 97
           FAEFYR
Sbjct: 435 FAEFYR 440

[Close]

BLAST of MELO3C016559 vs. NCBI nr
Match: gi|449450670|ref|XP_004143085.1| (PREDICTED: cullin-1 [Cucumis sativus])

HSP 1 Score: 42.7 bits (99), Expect = 4.1e-01
Identity = 20/22 (90.91%), Postives = 20/22 (90.91%), Query Frame = 1


Query: 10  IPLPLVDEKKKVIGDVDKDRRY 32
           IPLP VDEKKKVI DVDKDRRY
Sbjct: 656 IPLPPVDEKKKVIEDVDKDRRY 677

HSP 2 Score: 104.8 bits (260), Expect = 8.9e-20
Identity = 55/66 (83.33%), Postives = 57/66 (86.36%), Query Frame = 1


Query: 32  EAFEVFCNKGVARSSSIEFLVTFCDNILKKSEREKLSDKKIKETLEKVVKLLAYI-DKDL 91
           EAFEVFCNKGVA SSS E L TFCDNILKK   EKLSD+ I+ETLEKVVKLLAYI DKDL
Sbjct: 375 EAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEETLEKVVKLLAYISDKDL 434

Query: 92  FAEFYR 97
           FAEFYR
Sbjct: 435 FAEFYR 440

[Close]

BLAST of MELO3C016559 vs. NCBI nr
Match: gi|672164483|ref|XP_008802119.1| (PREDICTED: cullin-1 [Phoenix dactylifera])

HSP 1 Score: 42.4 bits (98), Expect = 5.4e-01
Identity = 19/22 (86.36%), Postives = 20/22 (90.91%), Query Frame = 1


Query: 10  IPLPLVDEKKKVIGDVDKDRRY 32
           IPLP VDEKKKV+ DVDKDRRY
Sbjct: 656 IPLPPVDEKKKVVEDVDKDRRY 677

HSP 2 Score: 104.8 bits (260), Expect = 8.9e-20
Identity = 55/66 (83.33%), Postives = 57/66 (86.36%), Query Frame = 1


Query: 32  EAFEVFCNKGVARSSSIEFLVTFCDNILKKSEREKLSDKKIKETLEKVVKLLAYI-DKDL 91
           EAFEVFCNKGVA SSS E L TFCDNILKK   EKLSD+ I+ETLEKVVKLLAYI DKDL
Sbjct: 78  EAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEETLEKVVKLLAYISDKDL 137

Query: 92  FAEFYR 97
           FAEFYR
Sbjct: 138 FAEFYR 143

[Close]

BLAST of MELO3C016559 vs. NCBI nr
Match: gi|34481803|emb|CAC87837.1| (cullin 1C [Nicotiana tabacum])

HSP 1 Score: 40.4 bits (93), Expect = 2.1e+00
Identity = 19/22 (86.36%), Postives = 19/22 (86.36%), Query Frame = 1


Query: 10  IPLPLVDEKKKVIGDVDKDRRY 32
           IPLP  DEKKKVI DVDKDRRY
Sbjct: 359 IPLPPEDEKKKVIEDVDKDRRY 380

HSP 2 Score: 104.8 bits (260), Expect = 8.9e-20
Identity = 55/66 (83.33%), Postives = 57/66 (86.36%), Query Frame = 1


Query: 32  EAFEVFCNKGVARSSSIEFLVTFCDNILKKSEREKLSDKKIKETLEKVVKLLAYI-DKDL 91
           EAFEVFCNKGVA SSS E L TFCDNILKK   EKLSD+ I+ETLEKVVKLLAYI DKDL
Sbjct: 375 EAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEETLEKVVKLLAYISDKDL 434

Query: 92  FAEFYR 97
           FAEFYR
Sbjct: 435 FAEFYR 440

The following BLAST results are available for this feature:

BLAST of MELO3C016559 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CUL1_ARATH	1.4e-20	78.79	Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1	[more]
CLL1_ARATH	4.6e-16	70.15	Putative cullin-like protein 1 OS=Arabidopsis thaliana GN=At1g43140 PE=3 SV=1	[more]
CUL2_ARATH	1.1e-14	67.16	Cullin-2 OS=Arabidopsis thaliana GN=CUL2 PE=1 SV=1	[more]

BLAST of MELO3C016559 vs. TrEMBL


Match Name	E-value	Identity	Description
Q711G6_TOBAC	6.2e-20	83.33	Cullin 1C (Fragment) OS=Nicotiana tabacum GN=cul1C PE=2 SV=1	[more]
Q711G6_TOBAC	1.4e+00	86.36	Cullin 1C (Fragment) OS=Nicotiana tabacum GN=cul1C PE=2 SV=1	[more]
A0A0A0KCC8_CUCSA	2.9e-01	90.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G197230 PE=3 SV=1	[more]
W9RHF4_9ROSA	2.9e-01	90.91	Uncharacterized protein OS=Morus notabilis GN=L484_023551 PE=3 SV=1	[more]
V4RG42_9ROSI	2.9e-01	90.91	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004406mg PE=3 SV=1	[more]

BLAST of MELO3C016559 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G02570.1	7.7e-22	78.79	cullin 1	[more]
AT1G43140.1	2.6e-17	70.15	Cullin family protein	[more]
AT1G02980.1	6.3e-16	67.16	cullin 2	[more]

BLAST of MELO3C016559 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|703105670\|ref\|XP_010098303.1\|	8.9e-20	83.33	hypothetical protein L484_023551 [Morus notabilis]	[more]
gi\|703105670\|ref\|XP_010098303.1\|	4.1e-01	90.91	hypothetical protein L484_023551 [Morus notabilis]	[more]
gi\|449450670\|ref\|XP_004143085.1\|	4.1e-01	90.91	PREDICTED: cullin-1 [Cucumis sativus]	[more]
gi\|672164483\|ref\|XP_008802119.1\|	5.4e-01	86.36	PREDICTED: cullin-1 [Phoenix dactylifera]	[more]
gi\|34481803\|emb\|CAC87837.1\|	2.1e+00	86.36	cullin 1C [Nicotiana tabacum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001373	Cullin_N
IPR016158	Cullin_homology

Vocabulary: **Biological Process**
Term	Definition
GO:0006511	ubiquitin-dependent protein catabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0031625	ubiquitin protein ligase binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0031461	cullin-RING ubiquitin ligase complex
molecular_function	GO:0031625	ubiquitin protein ligase binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C016559T1	MELO3C016559T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001373	Cullin, N-terminal	PFAM	PF00888	Cullin	coord: 31..96 score: 3.0
IPR016158	Cullin homology	PROFILE	PS50069	CULLIN_2	coord: 46..96 score: 9
IPR016158	Cullin homology	unknown	SSF75632	Cullin homology domain	coord: 45..96 score: 6.0
None	No IPR available	GENE3D	G3DSA:1.20.1310.10		coord: 47..96 score: 4.4
None	No IPR available	PANTHER	PTHR11932	CULLIN	coord: 32..96 score: 2.1
None	No IPR available	PANTHER	PTHR11932:SF84	SUBFAMILY NOT NAMED	coord: 32..96 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C016559	Silver-seed gourd	carmeB0223
MELO3C016559	Silver-seed gourd	carmeB0670
MELO3C016559	Watermelon (97103) v2	mewmbB431
MELO3C016559	Cucumber (Chinese Long) v3	cucmeB083
MELO3C016559	Cucumber (Chinese Long) v3	cucmeB248
MELO3C016559	Watermelon (97103) v2	mewmbB433
MELO3C016559	Wax gourd	mewgoB511
MELO3C016559	Melon (DHL92) v3.5.1	memeB073
MELO3C016559	Cucumber (Gy14) v1	cgymeB076
MELO3C016559	Cucumber (Gy14) v1	cgymeB200
MELO3C016559	Cucurbita maxima (Rimu)	cmameB292
MELO3C016559	Cucurbita maxima (Rimu)	cmameB689
MELO3C016559	Cucurbita moschata (Rifu)	cmomeB285
MELO3C016559	Cucurbita moschata (Rifu)	cmomeB680
MELO3C016559	Wild cucumber (PI 183967)	cpimeB078
MELO3C016559	Wild cucumber (PI 183967)	cpimeB242
MELO3C016559	Cucumber (Chinese Long) v2	cumeB077
MELO3C016559	Cucumber (Chinese Long) v2	cumeB244
MELO3C016559	Watermelon (97103) v1	mewmB457
MELO3C016559	Watermelon (Charleston Gray)	mewcgB416
MELO3C016559	Watermelon (Charleston Gray)	mewcgB426
MELO3C016559	Watermelon (97103) v1	mewmB458
MELO3C016559	Cucurbita pepo (Zucchini)	cpemeB186
MELO3C016559	Cucurbita pepo (Zucchini)	cpemeB409
MELO3C016559	Bottle gourd (USVL1VR-Ls)	lsimeB380
MELO3C016559	Cucumber (Gy14) v2	cgybmeB069
MELO3C016559	Cucumber (Gy14) v2	cgybmeB211