MELO3C016526 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C016526
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Pseudouridine-5'-phosphate glycosidase
Location	chr6 : 26679179 .. 26679459 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATATATCTTCTGATCTCACCGAGCTAAGAAGAACCCCTGTAGCTGCCATCTCAGCTAGTGTAAAATTGATATTAGACATCTCCAGGACCCTTGAATATTTGGTACAATCTTCTATTGTCCTACAATAAACCTTTTTACACATCATGCAGCTTTCTTTTTTATTTATTCACTGGCCCAAAAATGTTATTAACACAGGAAACTCAGGGAGTATGTGTTGCAGCTTATAGAACGACAAACGAATTTCCTGCTTTTTTTCTTGGAAACCAGTGGCTGCAAG

mRNA sequence

ATGGATATATCTTCTGATCTCACCGAGCTAAGAAGAACCCCTGTAGCTGCCATCTCAGCTAGTGTAAAATTGATATTAGACATCTCCAGGACCCTTGAATATTTGGAAACTCAGGGAGTATGTGTTGCAGCTTATAGAACGACAAACGAATTTCCTGCTTTTTTTCTTGGAAACCAGTGGCTGCAAG

Coding sequence (CDS)

ATGGATATATCTTCTGATCTCACCGAGCTAAGAAGAACCCCTGTAGCTGCCATCTCAGCTAGTGTAAAATTGATATTAGACATCTCCAGGACCCTTGAATATTTGGAAACTCAGGGAGTATGTGTTGCAGCTTATAGAACGACAAACGAATTTCCTGCTTTTTTTCTTGGAAACCAGTGGCTGCAAG

Protein sequence

MDISSDLTELRRTPVAAISASVKLILDISRTLEYLETQGVCVAAYRTTNEFPAFFLGNQWLQ

Homology

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BLAST of MELO3C016526 vs. Swiss-Prot
Match: PSUG_BREBN (Pseudouridine-5'-phosphate glycosidase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=psuG PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 9.7e-12
Identity = 36/54 (66.67%), Postives = 40/54 (74.07%), Query Frame = 1


Query: 2   DISSDLTELRRTPVAAISASVKLILDISRTLEYLETQGVCVAAYRTTNEFPAFF 56
           D+S+DLTEL +T VA + A  K ILDI RTLEYLETQGV V  YR T+EFP+FF
Sbjct: 138 DVSADLTELAQTDVAVVCAGAKSILDIGRTLEYLETQGVPVVGYR-TDEFPSFF 190

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BLAST of MELO3C016526 vs. Swiss-Prot
Match: PSUG_METNO (Pseudouridine-5'-phosphate glycosidase OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=psuG PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.8e-11
Identity = 35/55 (63.64%), Postives = 40/55 (72.73%), Query Frame = 1


Query: 1   MDISSDLTELRRTPVAAISASVKLILDISRTLEYLETQGVCVAAYRTTNEFPAFF 56
           +DIS+DL EL RTPVA + A  K ILD+ RTLEYLET+GV V  YR T+ FPAF+
Sbjct: 138 LDISADLDELARTPVAVVCAGAKAILDLPRTLEYLETRGVPVVGYR-TDRFPAFW 191

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BLAST of MELO3C016526 vs. Swiss-Prot
Match: PSUG_CHLSY (Pseudouridine-5'-phosphate glycosidase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=psuG PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.3e-11
Identity = 34/54 (62.96%), Postives = 38/54 (70.37%), Query Frame = 1


Query: 2   DISSDLTELRRTPVAAISASVKLILDISRTLEYLETQGVCVAAYRTTNEFPAFF 56
           D+S+DLTEL RTPV  + A  K ILD+  TLEYLETQGV V  Y+T  EFPAF+
Sbjct: 136 DVSADLTELGRTPVLVVCAGAKAILDLPATLEYLETQGVPVVGYQTV-EFPAFY 188

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BLAST of MELO3C016526 vs. Swiss-Prot
Match: PSUG2_RHIL3 (Pseudouridine-5'-phosphate glycosidase 2 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=psuG2 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.8e-10
Identity = 36/54 (66.67%), Postives = 39/54 (72.22%), Query Frame = 1


Query: 2   DISSDLTELRRTPVAAISASVKLILDISRTLEYLETQGVCVAAYRTTNEFPAFF 56
           DIS+DLTEL RT  A + A VK ILDI++TLEYLETQ V V AY  T +FPAFF
Sbjct: 139 DISADLTELGRTKTAVVCAGVKSILDIAKTLEYLETQRVPVIAY-GTEDFPAFF 191

[Close]

BLAST of MELO3C016526 vs. Swiss-Prot
Match: PSUG_ROSS1 (Pseudouridine-5'-phosphate glycosidase OS=Roseiflexus sp. (strain RS-1) GN=psuG PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.1e-10
Identity = 33/54 (61.11%), Postives = 37/54 (68.52%), Query Frame = 1


Query: 2   DISSDLTELRRTPVAAISASVKLILDISRTLEYLETQGVCVAAYRTTNEFPAFF 56
           D+S+DLTEL RTPV  + A  K ILD+  TLEYLET GV V  +RT  EFPAF+
Sbjct: 148 DVSADLTELERTPVLVVCAGAKAILDLPATLEYLETGGVPVLGWRTA-EFPAFY 200

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BLAST of MELO3C016526 vs. TrEMBL
Match: A0A0A0LXQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G616850 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.7e-16
Identity = 49/55 (89.09%), Postives = 49/55 (89.09%), Query Frame = 1


Query: 1   MDISSDLTELRRTPVAAISASVKLILDISRTLEYLETQGVCVAAYRTTNEFPAFF 56
           MDISSDLTEL RTPVA ISA VK ILDI RTLEYLETQGVCVAAYR TNEFPAFF
Sbjct: 174 MDISSDLTELGRTPVAVISAGVKSILDIPRTLEYLETQGVCVAAYR-TNEFPAFF 227

[Close]

BLAST of MELO3C016526 vs. TrEMBL
Match: M5X1Q1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009681mg PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.5e-16
Identity = 48/55 (87.27%), Postives = 49/55 (89.09%), Query Frame = 1


Query: 1   MDISSDLTELRRTPVAAISASVKLILDISRTLEYLETQGVCVAAYRTTNEFPAFF 56
           MDISSDLTEL RTPVA ISA VK ILD+ RTLEYLETQGVCVAAYR TNEFPAFF
Sbjct: 106 MDISSDLTELGRTPVAVISAGVKSILDVPRTLEYLETQGVCVAAYR-TNEFPAFF 159

[Close]

BLAST of MELO3C016526 vs. TrEMBL
Match: B9GIF5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s26090g PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 5.9e-16
Identity = 48/55 (87.27%), Postives = 49/55 (89.09%), Query Frame = 1


Query: 1   MDISSDLTELRRTPVAAISASVKLILDISRTLEYLETQGVCVAAYRTTNEFPAFF 56
           MDISSDLTEL RTPVA ISA VK ILDI RTLEYLETQGVCVAAY+ TNEFPAFF
Sbjct: 174 MDISSDLTELGRTPVAVISAGVKSILDIPRTLEYLETQGVCVAAYK-TNEFPAFF 227

[Close]

BLAST of MELO3C016526 vs. TrEMBL
Match: D7T1C1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0009g02380 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 5.9e-16
Identity = 48/55 (87.27%), Postives = 49/55 (89.09%), Query Frame = 1


Query: 1   MDISSDLTELRRTPVAAISASVKLILDISRTLEYLETQGVCVAAYRTTNEFPAFF 56
           MDISSDLTEL RTPVA ISA VK ILDI RTLEYLETQGVCVAAY+ TNEFPAFF
Sbjct: 167 MDISSDLTELGRTPVAVISAGVKSILDIPRTLEYLETQGVCVAAYK-TNEFPAFF 220

[Close]

BLAST of MELO3C016526 vs. TrEMBL
Match: A0A0D2N992_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G136000 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 7.7e-16
Identity = 47/55 (85.45%), Postives = 49/55 (89.09%), Query Frame = 1


Query: 1   MDISSDLTELRRTPVAAISASVKLILDISRTLEYLETQGVCVAAYRTTNEFPAFF 56
           MDISSDLTEL RTPVA +SA VK ILDI RTLEYLETQGVCVAAY+ TNEFPAFF
Sbjct: 164 MDISSDLTELGRTPVAVVSAGVKSILDIPRTLEYLETQGVCVAAYK-TNEFPAFF 217

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BLAST of MELO3C016526 vs. TAIR10
Match: AT1G50510.1 (AT1G50510.1 indigoidine synthase A family protein)

HSP 1 Score: 76.3 bits (186), Expect = 7.6e-15
Identity = 41/55 (74.55%), Postives = 44/55 (80.00%), Query Frame = 1


Query: 1   MDISSDLTELRRTPVAAISASVKLILDISRTLEYLETQGVCVAAYRTTNEFPAFF 56
           MDISSDLT L RTP+A ISA VK ILDI +TLEYLETQ V VAAY+ ++EFPAFF
Sbjct: 163 MDISSDLTALGRTPIAVISAGVKSILDIPKTLEYLETQEVYVAAYK-SDEFPAFF 216

[Close]

BLAST of MELO3C016526 vs. NCBI nr
Match: gi|449442563|ref|XP_004139051.1| (PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 3.8e-16
Identity = 49/55 (89.09%), Postives = 49/55 (89.09%), Query Frame = 1


Query: 1   MDISSDLTELRRTPVAAISASVKLILDISRTLEYLETQGVCVAAYRTTNEFPAFF 56
           MDISSDLTEL RTPVA ISA VK ILDI RTLEYLETQGVCVAAYR TNEFPAFF
Sbjct: 174 MDISSDLTELGRTPVAVISAGVKSILDIPRTLEYLETQGVCVAAYR-TNEFPAFF 227

[Close]

BLAST of MELO3C016526 vs. NCBI nr
Match: gi|694330768|ref|XP_009356077.1| (PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05-like [Pyrus x bretschneideri])

HSP 1 Score: 92.0 bits (227), Expect = 3.8e-16
Identity = 49/55 (89.09%), Postives = 49/55 (89.09%), Query Frame = 1


Query: 1   MDISSDLTELRRTPVAAISASVKLILDISRTLEYLETQGVCVAAYRTTNEFPAFF 56
           MDISSDLTEL RTPVA ISA VK ILDI RTLEYLETQGVCVAAYR TNEFPAFF
Sbjct: 168 MDISSDLTELGRTPVAVISAGVKSILDIPRTLEYLETQGVCVAAYR-TNEFPAFF 221

[Close]

BLAST of MELO3C016526 vs. NCBI nr
Match: gi|694421361|ref|XP_009338535.1| (PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05-like [Pyrus x bretschneideri])

HSP 1 Score: 92.0 bits (227), Expect = 3.8e-16
Identity = 49/55 (89.09%), Postives = 49/55 (89.09%), Query Frame = 1


Query: 1   MDISSDLTELRRTPVAAISASVKLILDISRTLEYLETQGVCVAAYRTTNEFPAFF 56
           MDISSDLTEL RTPVA ISA VK ILDI RTLEYLETQGVCVAAYR TNEFPAFF
Sbjct: 168 MDISSDLTELGRTPVAVISAGVKSILDIPRTLEYLETQGVCVAAYR-TNEFPAFF 221

[Close]

BLAST of MELO3C016526 vs. NCBI nr
Match: gi|659098985|ref|XP_008450377.1| (PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05 isoform X4 [Cucumis melo])

HSP 1 Score: 91.7 bits (226), Expect = 5.0e-16
Identity = 48/55 (87.27%), Postives = 49/55 (89.09%), Query Frame = 1


Query: 1   MDISSDLTELRRTPVAAISASVKLILDISRTLEYLETQGVCVAAYRTTNEFPAFF 56
           MDISSDLTEL RTPVA ISA +K ILDI RTLEYLETQGVCVAAYR TNEFPAFF
Sbjct: 109 MDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETQGVCVAAYR-TNEFPAFF 162

[Close]

BLAST of MELO3C016526 vs. NCBI nr
Match: gi|595864465|ref|XP_007211776.1| (hypothetical protein PRUPE_ppa009681mg [Prunus persica])

HSP 1 Score: 91.7 bits (226), Expect = 5.0e-16
Identity = 48/55 (87.27%), Postives = 49/55 (89.09%), Query Frame = 1


Query: 1   MDISSDLTELRRTPVAAISASVKLILDISRTLEYLETQGVCVAAYRTTNEFPAFF 56
           MDISSDLTEL RTPVA ISA VK ILD+ RTLEYLETQGVCVAAYR TNEFPAFF
Sbjct: 106 MDISSDLTELGRTPVAVISAGVKSILDVPRTLEYLETQGVCVAAYR-TNEFPAFF 159

The following BLAST results are available for this feature:

BLAST of MELO3C016526 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSUG_BREBN	9.7e-12	66.67	Pseudouridine-5'-phosphate glycosidase OS=Brevibacillus brevis (strain 47 / JCM ...	[more]
PSUG_METNO	2.8e-11	63.64	Pseudouridine-5'-phosphate glycosidase OS=Methylobacterium nodulans (strain ORS2...	[more]
PSUG_CHLSY	6.3e-11	62.96	Pseudouridine-5'-phosphate glycosidase OS=Chloroflexus aurantiacus (strain ATCC ...	[more]
PSUG2_RHIL3	1.8e-10	66.67	Pseudouridine-5'-phosphate glycosidase 2 OS=Rhizobium leguminosarum bv. viciae (...	[more]
PSUG_ROSS1	4.1e-10	61.11	Pseudouridine-5'-phosphate glycosidase OS=Roseiflexus sp. (strain RS-1) GN=psuG ...	[more]

BLAST of MELO3C016526 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXQ4_CUCSA	2.7e-16	89.09	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G616850 PE=3 SV=1	[more]
M5X1Q1_PRUPE	3.5e-16	87.27	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009681mg PE=3 SV=1	[more]
B9GIF5_POPTR	5.9e-16	87.27	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s26090g PE=3 SV=1	[more]
D7T1C1_VITVI	5.9e-16	87.27	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0009g02380 PE=3 SV=...	[more]
A0A0D2N992_GOSRA	7.7e-16	85.45	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G136000 PE=3 SV=1	[more]

BLAST of MELO3C016526 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G50510.1	7.6e-15	74.55	indigoidine synthase A family protein	[more]

BLAST of MELO3C016526 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449442563\|ref\|XP_004139051.1\|	3.8e-16	89.09	PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05 [Cucumis sat...	[more]
gi\|694330768\|ref\|XP_009356077.1\|	3.8e-16	89.09	PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05-like [Pyrus ...	[more]
gi\|694421361\|ref\|XP_009338535.1\|	3.8e-16	89.09	PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05-like [Pyrus ...	[more]
gi\|659098985\|ref\|XP_008450377.1\|	5.0e-16	87.27	PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05 isoform X4 [...	[more]
gi\|595864465\|ref\|XP_007211776.1\|	5.0e-16	87.27	hypothetical protein PRUPE_ppa009681mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007342	PsuG

Vocabulary: **Molecular Function**
Term	Definition
GO:0016798	hydrolase activity, acting on glycosyl bonds

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005777	peroxisome
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0016798	hydrolase activity, acting on glycosyl bonds

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C016526T1	MELO3C016526T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007342	Pseudouridine-5'-phosphate glycosidase	PFAM	PF04227	Indigoidine_A	coord: 1..57 score: 6.0
None	No IPR available	PANTHER	PTHR10584	SUGAR KINASE	coord: 1..55 score: 2.7
None	No IPR available	PANTHER	PTHR10584:SF201	INDIGOIDINE SYNTHASE A-LIKE PROTEIN	coord: 1..55 score: 2.7
None	No IPR available	unknown	SSF110581	Indigoidine synthase A-like	coord: 1..58 score: 1.23

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C016526	Watermelon (97103) v1	mewmB457
MELO3C016526	Watermelon (Charleston Gray)	mewcgB416
MELO3C016526	Watermelon (Charleston Gray)	mewcgB426
MELO3C016526	Watermelon (97103) v1	mewmB458
MELO3C016526	Cucurbita pepo (Zucchini)	cpemeB186
MELO3C016526	Cucurbita pepo (Zucchini)	cpemeB409
MELO3C016526	Bottle gourd (USVL1VR-Ls)	lsimeB380
MELO3C016526	Cucumber (Gy14) v2	cgybmeB069
MELO3C016526	Cucumber (Gy14) v2	cgybmeB211
MELO3C016526	Silver-seed gourd	carmeB0478
MELO3C016526	Silver-seed gourd	carmeB0670
MELO3C016526	Watermelon (97103) v2	mewmbB431
MELO3C016526	Cucumber (Chinese Long) v3	cucmeB083
MELO3C016526	Cucumber (Chinese Long) v3	cucmeB248
MELO3C016526	Watermelon (97103) v2	mewmbB433
MELO3C016526	Wax gourd	mewgoB502
MELO3C016526	Melon (DHL92) v3.5.1	memeB073
MELO3C016526	Cucumber (Gy14) v1	cgymeB076
MELO3C016526	Cucumber (Gy14) v1	cgymeB200
MELO3C016526	Cucurbita maxima (Rimu)	cmameB292
MELO3C016526	Cucurbita maxima (Rimu)	cmameB689
MELO3C016526	Cucurbita moschata (Rifu)	cmomeB285
MELO3C016526	Cucurbita moschata (Rifu)	cmomeB680
MELO3C016526	Wild cucumber (PI 183967)	cpimeB078
MELO3C016526	Wild cucumber (PI 183967)	cpimeB242
MELO3C016526	Cucumber (Chinese Long) v2	cumeB077
MELO3C016526	Cucumber (Chinese Long) v2	cumeB244