MELO3C016455 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C016455
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionIntegrase-type DNA-binding superfamily protein
Locationchr6 : 25153927 .. 25154265 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGATACATAATATGTACGATCTACCTATTGTACCTCCACCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAACTGAACTCGATGAAGTTTACCATAATGTAGAAGAAGTGCCTCCTACAACACAAACACAGAGCCAAACTGGTTATGGTAGTCTGATGACGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTGAGTTCGGTACAGGATATTATGATGCAGGGGTCGGTCCATCTTATTCTTACATGCATGGACATGGACGTGGCTATGGGGAACATAACGAATATCTGTATCATGAAGCACCTACAGATGTATCAGATCGACAATAG

mRNA sequence

ATGGAGAAGATACATAATATGTACGATCTACCTATTGTACCTCCACCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAACTGAACTCGATGAAGTTTACCATAATGTAGAAGAAGTGCCTCCTACAACACAAACACAGAGCCAAACTGGTTATGGTAGTCTGATGACGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTGAGTTCGGTACAGGATATTATGATGCAGGGGTCGGTCCATCTTATTCTTACATGCATGGACATGGACGTGGCTATGGGGAACATAACGAATATCTGTATCATGAAGCACCTACAGATGTATCAGATCGACAATAG

Coding sequence (CDS)

ATGGAGAAGATACATAATATGTACGATCTACCTATTGTACCTCCACCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAACTGAACTCGATGAAGTTTACCATAATGTAGAAGAAGTGCCTCCTACAACACAAACACAGAGCCAAACTGGTTATGGTAGTCTGATGACGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTGAGTTCGGTACAGGATATTATGATGCAGGGGTCGGTCCATCTTATTCTTACATGCATGGACATGGACGTGGCTATGGGGAACATAACGAATATCTGTATCATGAAGCACCTACAGATGTATCAGATCGACAATAG

Protein sequence

MEKIHNMYDLPIVPPPVHRGRVRVEETELDEVYHNVEEVPPTTQTQSQTGYGSLMTMMPTFGAGYCDSEFGTGYYDAGVGPSYSYMHGHGRGYGEHNEYLYHEAPTDVSDRQ*
Homology
[Close]
BLAST of MELO3C016455 vs. NCBI nr
Match: gi|659069376|ref|XP_008449513.1| (PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo])

HSP 1 Score: 121.3 bits (303), Expect = 1.1e-24
Identity = 68/136 (50.00%), Postives = 82/136 (60.29%), Query Frame = 1 

Query: 1   MEKIHNMYDLPIVPPPVHRGRVRVEETE-LDEVYHNVEEVPPTTQTQSQT--GYGSLMTM 60
           ME IH MYD+PIVP PV R R  V+E++ L+EV  + EEVPP TQTQ+Q+   Y S + M
Sbjct: 77  MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 136

Query: 61  MPTFGAGYCDS----------------------EFGTGYYDAGVGPSYSYMHGHGRGYGE 112
           MPTFG  Y DS                      +FG  YYD G  PS SYMHGHGRG GE
Sbjct: 137 MPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 196

[Close]
BLAST of MELO3C016455 vs. NCBI nr
Match: gi|778688386|ref|XP_011652738.1| (PREDICTED: uncharacterized protein LOC105435074 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-07
Identity = 35/67 (52.24%), Postives = 43/67 (64.18%), Query Frame = 1 

Query: 24  VEETELDEVYHNVEEVPPTTQTQSQTGYGSLMTMMPTFGAGYCD------SEFGTGYYDA 83
           V+  +L+EV  NVEEV P TQTQS+ GY SL+ MMPTFG  Y D      S+F T YY++
Sbjct: 166 VKSDQLEEVDQNVEEVAPVTQTQSEHGYVSLVMMMPTFGTTYYDYGVGQSSDFRTWYYNS 225

Query: 84  GVGPSYS 85
             G S S
Sbjct: 226 EAGSSSS 232

The following BLAST results are available for this feature:
BLAST of MELO3C016455 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659069376|ref|XP_008449513.1|1.1e-2450.00PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo][more]
gi|778688386|ref|XP_011652738.1|2.0e-0752.24PREDICTED: uncharacterized protein LOC105435074 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C016455T1MELO3C016455T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C016455Cucurbita maxima (Rimu)cmameB292
MELO3C016455Cucurbita maxima (Rimu)cmameB689
MELO3C016455Cucurbita moschata (Rifu)cmomeB285
MELO3C016455Cucurbita moschata (Rifu)cmomeB680
MELO3C016455Wild cucumber (PI 183967)cpimeB242
MELO3C016455Cucumber (Chinese Long) v2cumeB244
MELO3C016455Watermelon (Charleston Gray)mewcgB416
MELO3C016455Watermelon (97103) v1mewmB458
MELO3C016455Cucurbita pepo (Zucchini)cpemeB186
MELO3C016455Cucurbita pepo (Zucchini)cpemeB409
MELO3C016455Bottle gourd (USVL1VR-Ls)lsimeB380
MELO3C016455Cucumber (Gy14) v2cgybmeB211
MELO3C016455Silver-seed gourdcarmeB0007
MELO3C016455Silver-seed gourdcarmeB0565
MELO3C016455Watermelon (97103) v2mewmbB431
MELO3C016455Cucumber (Chinese Long) v3cucmeB248
MELO3C016455Wax gourdmewgoB509
MELO3C016455Cucumber (Gy14) v1cgymeB437