MELO3C016327 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C016327
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionSpc97 / Spc98 family of spindle pole body (SBP) component, putative isoform 4
Locationchr7 : 22090800 .. 22090982 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACTGCTCGTGCTTTTCCGAAGCCCCCTTCGCTGCTGCCGTCACTGCAGCCCACCATTGGCTTTGTCAGTCCCGTTTCCTTCCAAACGTCGTCGTCGTTGCCTTATCGTCTCCGGAGACACCGTTCAATTGTCACTTCTCATCAGCGGCCACTGCCACTCCCGTTGCCGCGTCCTTGA

mRNA sequence

ATGGCCACTGCTCGTGCTTTTCCGAAGCCCCCTTCGCTGCTGCCGTCACTGCAGCCCACCATTGGCTTTGTCAGTCCCGTTTCCTTCCAAACGTCGTCGTCGTTGCCTTATCGTCTCCGGAGACACCGTTCAATTGTCACTTCTCATCAGCGGCCACTGCCACTCCCGTTGCCGCGTCCTTGA

Coding sequence (CDS)

ATGGCCACTGCTCGTGCTTTTCCGAAGCCCCCTTCGCTGCTGCCGTCACTGCAGCCCACCATTGGCTTTGTCAGTCCCGTTTCCTTCCAAACGTCGTCGTCGTTGCCTTATCGTCTCCGGAGACACCGTTCAATTGTCACTTCTCATCAGCGGCCACTGCCACTCCCGTTGCCGCGTCCTTGA

Protein sequence

MATARAFPKPPSLLPSLQPTIGFVSPVSFQTSSSLPYRLRRHRSIVTSHQRPLPLPLPRP*
Homology
[Close]
BLAST of MELO3C016327 vs. TrEMBL
Match: A0A0A0KUY0_CUCSA (Protein translocase subunit SecA OS=Cucumis sativus GN=Csa_4G050230 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 9.9e-16
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 1 

Query: 1  MATARAFPKPPSLLPSLQPTIGFVSPVSFQTSSSLPYRLRRHRSIVTS 49
          MAT RAFPKPPSLLPSLQPTIGFVSP+SFQTSSSL YRLRRHRSIV S
Sbjct: 1  MATTRAFPKPPSLLPSLQPTIGFVSPISFQTSSSLRYRLRRHRSIVNS 48

[Close]
BLAST of MELO3C016327 vs. NCBI nr
Match: gi|659102168|ref|XP_008451986.1| (PREDICTED: protein translocase subunit SECA2, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 91.7 bits (226), Expect = 4.9e-16
Identity = 46/57 (80.70%), Postives = 48/57 (84.21%), Query Frame = 1 

Query: 1  MATARAFPKPPSLLPSLQPTIGFVSPVSFQTSSSLPYRLRRHRSIVTSHQRPLPLPL 58
          MATARAFPKPPSLLPSL  T+GFVSPVSFQTSSSLPYRLRRHRSIVTS       P+
Sbjct: 1  MATARAFPKPPSLLPSLPLTVGFVSPVSFQTSSSLPYRLRRHRSIVTSSSAATATPV 57

[Close]
BLAST of MELO3C016327 vs. NCBI nr
Match: gi|449457678|ref|XP_004146575.1| (PREDICTED: protein translocase subunit SECA2, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-15
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 1 

Query: 1  MATARAFPKPPSLLPSLQPTIGFVSPVSFQTSSSLPYRLRRHRSIVTS 49
          MAT RAFPKPPSLLPSLQPTIGFVSP+SFQTSSSL YRLRRHRSIV S
Sbjct: 1  MATTRAFPKPPSLLPSLQPTIGFVSPISFQTSSSLRYRLRRHRSIVNS 48

The following BLAST results are available for this feature:
BLAST of MELO3C016327 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUY0_CUCSA9.9e-1691.67Protein translocase subunit SecA OS=Cucumis sativus GN=Csa_4G050230 PE=3 SV=1[more]
BLAST of MELO3C016327 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659102168|ref|XP_008451986.1|4.9e-1680.70PREDICTED: protein translocase subunit SECA2, chloroplastic isoform X1 [Cucumis ... [more]
gi|449457678|ref|XP_004146575.1|1.4e-1591.67PREDICTED: protein translocase subunit SECA2, chloroplastic isoform X1 [Cucumis ... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0017038 protein import
biological_process GO:0006605 protein targeting
cellular_component GO:0005622 intracellular
cellular_component GO:0016020 membrane
molecular_function GO:0005524 ATP binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C016327T1MELO3C016327T1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C016327ClCG07G007680Watermelon (Charleston Gray)mewcgB484
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C016327Watermelon (97103) v2mewmbB455
MELO3C016327Watermelon (97103) v2mewmbB483
MELO3C016327Watermelon (97103) v2mewmbB490
MELO3C016327Wax gourdmewgoB568
MELO3C016327Melon (DHL92) v3.5.1memeB021
MELO3C016327Melon (DHL92) v3.5.1memeB022
MELO3C016327Melon (DHL92) v3.5.1memeB151
MELO3C016327Cucumber (Gy14) v1cgymeB141
MELO3C016327Cucumber (Gy14) v1cgymeB501
MELO3C016327Cucurbita maxima (Rimu)cmameB301
MELO3C016327Cucurbita maxima (Rimu)cmameB694
MELO3C016327Cucurbita moschata (Rifu)cmomeB274
MELO3C016327Cucurbita moschata (Rifu)cmomeB294
MELO3C016327Cucurbita moschata (Rifu)cmomeB686
MELO3C016327Wild cucumber (PI 183967)cpimeB252
MELO3C016327Wild cucumber (PI 183967)cpimeB310
MELO3C016327Wild cucumber (PI 183967)cpimeB405
MELO3C016327Cucumber (Chinese Long) v2cumeB257
MELO3C016327Cucumber (Chinese Long) v2cumeB312
MELO3C016327Cucumber (Chinese Long) v2cumeB407
MELO3C016327Cucumber (Chinese Long) v2cumeB408
MELO3C016327Watermelon (Charleston Gray)mewcgB467
MELO3C016327Watermelon (Charleston Gray)mewcgB468
MELO3C016327Watermelon (Charleston Gray)mewcgB478
MELO3C016327Watermelon (97103) v1mewmB505
MELO3C016327Watermelon (97103) v1mewmB526
MELO3C016327Watermelon (97103) v1mewmB530
MELO3C016327Cucurbita pepo (Zucchini)cpemeB196
MELO3C016327Cucurbita pepo (Zucchini)cpemeB415
MELO3C016327Bottle gourd (USVL1VR-Ls)lsimeB038
MELO3C016327Bottle gourd (USVL1VR-Ls)lsimeB387
MELO3C016327Bottle gourd (USVL1VR-Ls)lsimeB457
MELO3C016327Cucumber (Gy14) v2cgybmeB220
MELO3C016327Cucumber (Gy14) v2cgybmeB269
MELO3C016327Cucumber (Gy14) v2cgybmeB355
MELO3C016327Silver-seed gourdcarmeB0596
MELO3C016327Silver-seed gourdcarmeB0924
MELO3C016327Cucumber (Chinese Long) v3cucmeB258
MELO3C016327Cucumber (Chinese Long) v3cucmeB315
MELO3C016327Cucumber (Chinese Long) v3cucmeB417
MELO3C016327Cucumber (Chinese Long) v3cucmeB418