MELO3C016265 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C016265
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	UvrABC system protein B
Location	chr7 : 21380478 .. 21380732 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGAGCAAACCGATGATCAGGTTCAAGCAGTTCGTCAAGACGTTGAAGGATTAAAAGATCAATTGACAAAGATTCTAGGTTTGCTCACTACTGGAAGAGGAAAGAGTGTTGCGGGAACTTCATCACAAGTGGAAGTAGATCGGAACCAAGTACTAGAGGACATGCCTGCATACTCTCCGGGTTTTACTCCTCAAAGGTCGTCTAGTCCACGCATGGTGGATAGGACATATCCAACATCCTTTCCTGCGTAA

mRNA sequence

ATGAATGAGCAAACCGATGATCAGGTTCAAGCAGTTCGTCAAGACGTTGAAGGATTAAAAGATCAATTGACAAAGATTCTAGGTTTGCTCACTACTGGAAGAGGAAAGAGTGTTGCGGGAACTTCATCACAAGTGGAAGTAGATCGGAACCAAGTACTAGAGGACATGCCTGCATACTCTCCGGGTTTTACTCCTCAAAGGTCGTCTAGTCCACGCATGGTGGATAGGACATATCCAACATCCTTTCCTGCGTAA

Coding sequence (CDS)

ATGAATGAGCAAACCGATGATCAGGTTCAAGCAGTTCGTCAAGACGTTGAAGGATTAAAAGATCAATTGACAAAGATTCTAGGTTTGCTCACTACTGGAAGAGGAAAGAGTGTTGCGGGAACTTCATCACAAGTGGAAGTAGATCGGAACCAAGTACTAGAGGACATGCCTGCATACTCTCCGGGTTTTACTCCTCAAAGGTCGTCTAGTCCACGCATGGTGGATAGGACATATCCAACATCCTTTCCTGCGTAA

Protein sequence

MNEQTDDQVQAVRQDVEGLKDQLTKILGLLTTGRGKSVAGTSSQVEVDRNQVLEDMPAYSPGFTPQRSSSPRMVDRTYPTSFPA*

Homology

[Close]

BLAST of MELO3C016265 vs. NCBI nr
Match: gi|659102853|ref|XP_008452348.1| (PREDICTED: uncharacterized protein LOC103493407 [Cucumis melo])

HSP 1 Score: 145.6 bits (366), Expect = 4.0e-32
Identity = 74/84 (88.10%), Postives = 77/84 (91.67%), Query Frame = 1


Query: 1  MNEQTDDQVQAVRQDVEGLKDQLTKILGLLTTGRGKSVAGTSSQVEVDRNQVLEDMPAYS 60
          M+EQT+DQVQAVRQDVEGLKDQL KIL LLTTGRGKSVAGTSSQVEVD NQVLED+ AY 
Sbjct: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLEDILAYP 60

Query: 61 PGFTPQRSSSPRMVDRTYPTSFPA 85
          P FTPQR SSPRMVDRTYPTSFPA
Sbjct: 61 PSFTPQRPSSPRMVDRTYPTSFPA 84

[Close]

BLAST of MELO3C016265 vs. NCBI nr
Match: gi|659122237|ref|XP_008461036.1| (PREDICTED: uncharacterized protein LOC103499741 [Cucumis melo])

HSP 1 Score: 144.1 bits (362), Expect = 1.2e-31
Identity = 73/83 (87.95%), Postives = 77/83 (92.77%), Query Frame = 1


Query: 1  MNEQTDDQVQAVRQDVEGLKDQLTKILGLLTTGRGKSVAGTSSQVEVDRNQVLEDMPAYS 60
          M+EQT+DQVQAV QDVEGL+DQL KIL LLTTGRGK+VAGTSSQVEVD NQVLEDM AY 
Sbjct: 1  MDEQTNDQVQAVCQDVEGLEDQLKKILELLTTGRGKNVAGTSSQVEVDLNQVLEDMSAYL 60

Query: 61 PGFTPQRSSSPRMVDRTYPTSFP 84
          PGFTPQRSSSPRMVDRTYPTSFP
Sbjct: 61 PGFTPQRSSSPRMVDRTYPTSFP 83

[Close]

BLAST of MELO3C016265 vs. NCBI nr
Match: gi|659114599|ref|XP_008457136.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496882 [Cucumis melo])

HSP 1 Score: 137.1 bits (344), Expect = 1.4e-29
Identity = 69/83 (83.13%), Postives = 74/83 (89.16%), Query Frame = 1


Query: 1  MNEQTDDQVQAVRQDVEGLKDQLTKILGLLTTGRGKSVAGTSSQVEVDRNQVLEDMPAYS 60
          M+EQ++DQVQAVRQDVEGLKDQL KIL LLTTGRGKSVAG SSQVEVD NQVLEDM  Y 
Sbjct: 1  MDEQSNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGISSQVEVDLNQVLEDMTTYP 60

Query: 61 PGFTPQRSSSPRMVDRTYPTSFP 84
          PGFTPQ+SSSPR+VDRTYPT  P
Sbjct: 61 PGFTPQQSSSPRIVDRTYPTQNP 83

[Close]

BLAST of MELO3C016265 vs. NCBI nr
Match: gi|659093710|ref|XP_008447676.1| (PREDICTED: uncharacterized protein LOC103490085 [Cucumis melo])

HSP 1 Score: 128.3 bits (321), Expect = 6.6e-27
Identity = 68/83 (81.93%), Postives = 70/83 (84.34%), Query Frame = 1


Query: 1  MNEQTDDQVQAVRQDVEGLKDQLTKILGLLTTGRGKSVAGTSSQVEVDRNQVLEDMPAYS 60
          M+EQT+DQVQAVRQDVEGLKDQL KIL LLT GRGKSV G SSQVEVD NQVLEDMPAY 
Sbjct: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTIGRGKSVTGISSQVEVDLNQVLEDMPAYP 60

Query: 61 PGFTPQRSSSPRMVDRTYPTSFP 84
          PGFTPQRSSSPRM   TY T  P
Sbjct: 61 PGFTPQRSSSPRM---TYSTQNP 80

[Close]

BLAST of MELO3C016265 vs. NCBI nr
Match: gi|659130442|ref|XP_008465174.1| (PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo])

HSP 1 Score: 126.7 bits (317), Expect = 1.9e-26
Identity = 68/83 (81.93%), Postives = 70/83 (84.34%), Query Frame = 1


Query: 1  MNEQTDDQVQAVRQDVEGLKDQLTKILGLLTTGRGKSVAGTSSQVEVDRNQVLEDMPAYS 60
          M+EQT+DQVQAVRQDVEGLKDQL KIL L TTGR KSVAG SSQVEVD NQVLEDMPAY 
Sbjct: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELFTTGRRKSVAGISSQVEVDLNQVLEDMPAYP 60

Query: 61 PGFTPQRSSSPRMVDRTYPTSFP 84
           GFTPQRSSSPRM   TYPT  P
Sbjct: 61 IGFTPQRSSSPRM---TYPTQNP 80

The following BLAST results are available for this feature:

BLAST of MELO3C016265 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659102853\|ref\|XP_008452348.1\|	4.0e-32	88.10	PREDICTED: uncharacterized protein LOC103493407 [Cucumis melo]	[more]
gi\|659122237\|ref\|XP_008461036.1\|	1.2e-31	87.95	PREDICTED: uncharacterized protein LOC103499741 [Cucumis melo]	[more]
gi\|659114599\|ref\|XP_008457136.1\|	1.4e-29	83.13	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496882 [Cucumis me...	[more]
gi\|659093710\|ref\|XP_008447676.1\|	6.6e-27	81.93	PREDICTED: uncharacterized protein LOC103490085 [Cucumis melo]	[more]
gi\|659130442\|ref\|XP_008465174.1\|	1.9e-26	81.93	PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C016265T1	MELO3C016265T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 2..22 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C016265	Bhi01G002328	Wax gourd	mewgoB580

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C016265	Cucumber (Gy14) v2	cgybmeB269
MELO3C016265	Silver-seed gourd	carmeB0652
MELO3C016265	Cucumber (Chinese Long) v3	cucmeB315
MELO3C016265	Watermelon (97103) v2	mewmbB491
MELO3C016265	Cucumber (Gy14) v1	cgymeB165
MELO3C016265	Cucurbita maxima (Rimu)	cmameB301
MELO3C016265	Cucurbita maxima (Rimu)	cmameB694
MELO3C016265	Cucurbita moschata (Rifu)	cmomeB294
MELO3C016265	Cucurbita moschata (Rifu)	cmomeB686
MELO3C016265	Wild cucumber (PI 183967)	cpimeB310
MELO3C016265	Cucumber (Chinese Long) v2	cumeB312
MELO3C016265	Watermelon (Charleston Gray)	mewcgB485
MELO3C016265	Watermelon (97103) v1	mewmB516
MELO3C016265	Cucurbita pepo (Zucchini)	cpemeB196
MELO3C016265	Bottle gourd (USVL1VR-Ls)	lsimeB455