MELO3C016240 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C016240
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPhosphoribosyl-AMP cyclohydrolase
Locationchr7 : 21165798 .. 21166423 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATCTTGTCCCGTGCCCTGAACCATGTATGGACTAAGGAGGAGGAGGACACTCTTTTAGAGTGTTTAGTGGAGTTGGTGTCCATTGAGGATGGAAATTTGATAATAGTACATTCCGGCCAGGTTACCTGGCTCAACTGATAGCATGATGGCCGAAAAAAATGTCTGGATGTCGTGTTCGCACAACCACTGTAATCGACTGAAAAATAAAGACACTTAAGTGGACATTTCAGGCCATTGCAGAAATGCGGGGGCCAGCGTGCAGTGGGTTCAGTTGGAACGATGAAGAAAATGCATAATTGCGGAGAAGGAAGTATTCGATAACTGGGTTAGGGTAAGGAAAATAATATAAACGTCACACTACTTGCGCAGTGTACATTTACTTCACAATTTTCCTATTAATACTTTTAAGTTGTTCTGTTTTTATGCAGTCGCATCCTGCAACGAAGGGGCTCCTTCACAAGCCATTTTTCTATTACGATGAACTTGTATATATGTTTGGACGCGATAGGGCGACGGATCGCTTTACTAAGACATTCATCAACGTTGGTTCTAACGAACTTACCGAGCATGAGGGGTTTGACATGTCGGACGGGAATGAGTTTCCATCCGTATACAGCTAG

mRNA sequence

ATGGCAATCTTGTCCCGTGCCCTGAACCATGTATGGACTAAGGAGGAGGAGGACACTCTTTTAGAGTGTTTAGTGGAGTTGGTGTCCATTGAGGATGGAAATTTGATAATAGTACATTCCGGCCAGTCGCATCCTGCAACGAAGGGGCTCCTTCACAAGCCATTTTTCTATTACGATGAACTTGTATATATGTTTGGACGCGATAGGGCGACGGATCGCTTTACTAAGACATTCATCAACGTTGGTTCTAACGAACTTACCGAGCATGAGGGGTTTGACATGTCGGACGGGAATGAGTTTCCATCCGTATACAGCTAG

Coding sequence (CDS)

ATGGCAATCTTGTCCCGTGCCCTGAACCATGTATGGACTAAGGAGGAGGAGGACACTCTTTTAGAGTGTTTAGTGGAGTTGGTGTCCATTGAGGATGGAAATTTGATAATAGTACATTCCGGCCAGTCGCATCCTGCAACGAAGGGGCTCCTTCACAAGCCATTTTTCTATTACGATGAACTTGTATATATGTTTGGACGCGATAGGGCGACGGATCGCTTTACTAAGACATTCATCAACGTTGGTTCTAACGAACTTACCGAGCATGAGGGGTTTGACATGTCGGACGGGAATGAGTTTCCATCCGTATACAGCTAG

Protein sequence

MAILSRALNHVWTKEEEDTLLECLVELVSIEDGNLIIVHSGQSHPATKGLLHKPFFYYDELVYMFGRDRATDRFTKTFINVGSNELTEHEGFDMSDGNEFPSVYS*
Homology
[Close]
BLAST of MELO3C016240 vs. TrEMBL
Match: A5Y732_CUCME (Transposase OS=Cucumis melo PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.9e-18
Identity = 52/93 (55.91%), Postives = 66/93 (70.97%), Query Frame = 1 

Query: 15  EEEDTLLECLVELVSIEDGNLIIVHSGQSHPATKGLLHKPFFYYDELVYMFGRDRATDRF 74
           E+E TL+ECLVELVS  D +  +  S Q+HPA KGLL+K F YYDELVY+F RDR T + 
Sbjct: 249 EDEATLVECLVELVSAMDESRTMGCSDQTHPAAKGLLNKLFPYYDELVYVFERDRVTGQG 308

Query: 75  TKTFINVGSNELTEHEGFDMSDGNEF--PSVYS 106
            KTF+NV SN+  E+EGF   D N+   P++YS
Sbjct: 309 VKTFVNVESNDPIEYEGFQTPDENDMKNPTMYS 341

[Close]
BLAST of MELO3C016240 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.6e-13
Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = 1 

Query: 42  QSHPATKGLLHKPFFYYDELVYMFGRDRATDRFTKTFINVGSNEL-TEHEGFDMSDGNE- 101
           +S PA KGLL+ PF YYDEL Y+FGRDRAT RF +TF +VGSNE    ++ FDM DGNE 
Sbjct: 430 RSPPAAKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNED 489

Query: 102 FPSVYS 106
           FP VYS
Sbjct: 490 FPPVYS 495

[Close]
BLAST of MELO3C016240 vs. NCBI nr
Match: gi|148270941|gb|ABQ53639.1| (transposase [Cucumis melo])

HSP 1 Score: 98.6 bits (244), Expect = 7.0e-18
Identity = 52/93 (55.91%), Postives = 66/93 (70.97%), Query Frame = 1 

Query: 15  EEEDTLLECLVELVSIEDGNLIIVHSGQSHPATKGLLHKPFFYYDELVYMFGRDRATDRF 74
           E+E TL+ECLVELVS  D +  +  S Q+HPA KGLL+K F YYDELVY+F RDR T + 
Sbjct: 249 EDEATLVECLVELVSAMDESRTMGCSDQTHPAAKGLLNKLFPYYDELVYVFERDRVTGQG 308

Query: 75  TKTFINVGSNELTEHEGFDMSDGNEF--PSVYS 106
            KTF+NV SN+  E+EGF   D N+   P++YS
Sbjct: 309 VKTFVNVESNDPIEYEGFQTPDENDMKNPTMYS 341

[Close]
BLAST of MELO3C016240 vs. NCBI nr
Match: gi|659093712|ref|XP_008447677.1| (PREDICTED: uncharacterized protein LOC103490086 [Cucumis melo])

HSP 1 Score: 86.3 bits (212), Expect = 3.6e-14
Identity = 44/79 (55.70%), Postives = 56/79 (70.89%), Query Frame = 1 

Query: 33  GNLI-----IVHSGQSHPATKGLLHKPFFYYDELVYMFGRDRATDRFTKTFINVGSNELT 92
           GNL+      +  G+   ++KGLL+K F YYDEL YMF RDR TDRF +TF ++GSNE  
Sbjct: 151 GNLLSCTQACMDEGRGEHSSKGLLNKSFPYYDELAYMFDRDRTTDRFIETFTDIGSNEPI 210

Query: 93  EHEGFDMSDGN-EFPSVYS 106
            +EGF+MSDGN EF S+YS
Sbjct: 211 RYEGFNMSDGNEEFSSIYS 229

[Close]
BLAST of MELO3C016240 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 82.4 bits (202), Expect = 5.2e-13
Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = 1 

Query: 42  QSHPATKGLLHKPFFYYDELVYMFGRDRATDRFTKTFINVGSNEL-TEHEGFDMSDGNE- 101
           +S PA KGLL+ PF YYDEL Y+FGRDRAT RF +TF +VGSNE    ++ FDM DGNE 
Sbjct: 430 RSPPAAKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNED 489

Query: 102 FPSVYS 106
           FP VYS
Sbjct: 490 FPPVYS 495

[Close]
BLAST of MELO3C016240 vs. NCBI nr
Match: gi|659113923|ref|XP_008456820.1| (PREDICTED: uncharacterized protein LOC103496659 [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 9.7e-12
Identity = 49/112 (43.75%), Postives = 58/112 (51.79%), Query Frame = 1 

Query: 1   MAILSRALNHVWTKEEEDTLLECLVELVS--------------------------IEDGN 60
           MA  SRA  H WTKEEE  L+ECLVELVS                          + D N
Sbjct: 1   MASSSRATKHAWTKEEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTN 60

Query: 61  L--IIVHSGQSHPATKGLLHKPFFYYDELVYMFGRDRATDRFTKTFINVGSN 85
           +        +SHPA KGLLHK F YYD+L Y+FG D AT   ++TF + GSN
Sbjct: 61  IQGSPTIDCRSHPAAKGLLHKSFPYYDDLSYVFGNDGATGAHSETFADGGSN 112

[Close]
BLAST of MELO3C016240 vs. NCBI nr
Match: gi|659068476|ref|XP_008444620.1| (PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 3.1e-10
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 1 

Query: 44  HPATKGLLHKPFFYYDELVYMFGRDRATDRFTKTFINVGSNELTEHEGFDMSDGN--EFP 103
           HP  K LL+K F YYDEL Y+F +DRAT R  +TF ++GSN+ + +EGF   DGN  E P
Sbjct: 32  HPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPPDGNDMEIP 91

Query: 104 SVYS 106
           ++YS
Sbjct: 92  TIYS 95

The following BLAST results are available for this feature:
BLAST of MELO3C016240 vs. TrEMBL
Match NameE-valueIdentityDescription
A5Y732_CUCME4.9e-1855.91Transposase OS=Cucumis melo PE=4 SV=1[more]
E5GBB2_CUCME3.6e-1365.15Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of MELO3C016240 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|148270941|gb|ABQ53639.1|7.0e-1855.91transposase [Cucumis melo][more]
gi|659093712|ref|XP_008447677.1|3.6e-1455.70PREDICTED: uncharacterized protein LOC103490086 [Cucumis melo][more]
gi|307135889|gb|ADN33754.1|5.2e-1365.15retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659113923|ref|XP_008456820.1|9.7e-1243.75PREDICTED: uncharacterized protein LOC103496659 [Cucumis melo][more]
gi|659068476|ref|XP_008444620.1|3.1e-1053.13PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C016240T1MELO3C016240T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C016240Cucurbita maxima (Rimu)cmameB301
MELO3C016240Cucurbita moschata (Rifu)cmomeB294
MELO3C016240Cucurbita moschata (Rifu)cmomeB697
MELO3C016240Watermelon (Charleston Gray)mewcgB485
MELO3C016240Watermelon (97103) v1mewmB508
MELO3C016240Cucurbita pepo (Zucchini)cpemeB196
MELO3C016240Cucurbita pepo (Zucchini)cpemeB426
MELO3C016240Bottle gourd (USVL1VR-Ls)lsimeB455
MELO3C016240Silver-seed gourdcarmeB0042
MELO3C016240Silver-seed gourdcarmeB0652
MELO3C016240Watermelon (97103) v2mewmbB491