MELO3C016072 (gene) Melon (DHL92) v3.5.1

NameMELO3C016072
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDNA-directed RNA polymerase subunit beta'
Locationchr7 : 18611259 .. 18611426 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATATTACGGCAACGTTGACGACGTGGACGAGGAAGACTCCACCTACGCGACGACCACCGCTTCAGAAGAAATTCACTACATTGAGACGACAAACGAGTGGTCTCAGTGGAGCGACGAACTAGCCGAATCGATGTTCACTGATTGGCAGTTGCGTAACGCTTAG

mRNA sequence

ATGACATATTACGGCAACGTTGACGACGTGGACGAGGAAGACTCCACCTACGCGACGACCACCGCTTCAGAAGAAATTCACTACATTGAGACGACAAACGAGTGGTCTCAGTGGAGCGACGAACTAGCCGAATCGATGTTCACTGATTGGCAGTTGCGTAACGCTTAG

Coding sequence (CDS)

ATGACATATTACGGCAACGTTGACGACGTGGACGAGGAAGACTCCACCTACGCGACGACCACCGCTTCAGAAGAAATTCACTACATTGAGACGACAAACGAGTGGTCTCAGTGGAGCGACGAACTAGCCGAATCGATGTTCACTGATTGGCAGTTGCGTAACGCTTAG

Protein sequence

MTYYGNVDDVDEEDSTYATTTASEEIHYIETTNEWSQWSDELAESMFTDWQLRNA*
BLAST of MELO3C016072 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 5.3e-16
Identity = 41/53 (77.36%), Postives = 45/53 (84.91%), Query Frame = 1

Query: 1   MTYYGNVDDVDEEDSTYATTTASEEIHYIETTNEWSQWSDELAESMFTDWQLR 54
           MTY  +V+D DE DSTYATTTASE+I YIETTNEWSQW D+LA SMFTDWQ R
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFR 335

BLAST of MELO3C016072 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-07
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 1

Query: 1   MTYYGNVDDVDEEDSTYATTTASEEIHYIETTNEWSQWSDELAESMFT 49
           MT +   D++DE DST+AT TA+++IHYIET+NEWSQW D LAE + T
Sbjct: 311 MTNFDIEDNIDEVDSTHAT-TAADDIHYIETSNEWSQWRDNLAEEIMT 357

BLAST of MELO3C016072 vs. NCBI nr
Match: gi|659099182|ref|XP_008450472.1| (PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 3.1e-17
Identity = 44/55 (80.00%), Postives = 46/55 (83.64%), Query Frame = 1

Query: 1   MTYYGNVDDVDEEDSTYATTTASEEIHYIETTNEWSQWSDELAESMFTDWQLRNA 56
           MTY  +VDDVDE D  YATTT  EEIHYIE TNEWSQW D+LAESMFTDWQLRNA
Sbjct: 142 MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA 196

BLAST of MELO3C016072 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 90.9 bits (224), Expect = 7.7e-16
Identity = 41/53 (77.36%), Postives = 45/53 (84.91%), Query Frame = 1

Query: 1   MTYYGNVDDVDEEDSTYATTTASEEIHYIETTNEWSQWSDELAESMFTDWQLR 54
           MTY  +V+D DE DSTYATTTASE+I YIETTNEWSQW D+LA SMFTDWQ R
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFR 335

BLAST of MELO3C016072 vs. NCBI nr
Match: gi|659121362|ref|XP_008460622.1| (PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo])

HSP 1 Score: 80.9 bits (198), Expect = 7.9e-13
Identity = 36/54 (66.67%), Postives = 46/54 (85.19%), Query Frame = 1

Query: 1   MTYYGNVDDVDEEDSTYATTTASEEIHYIETTNEWSQWSDELAESMFTDWQLRN 55
           MT +   D++DE DST+AT TA+++IHYIET+NEWSQW D+LAE MFTDW+LRN
Sbjct: 150 MTNFDIEDNIDEVDSTHAT-TAADDIHYIETSNEWSQWRDDLAEEMFTDWELRN 202

BLAST of MELO3C016072 vs. NCBI nr
Match: gi|659112451|ref|XP_008456228.1| (PREDICTED: uncharacterized protein LOC103496233 [Cucumis melo])

HSP 1 Score: 76.3 bits (186), Expect = 2.0e-11
Identity = 32/54 (59.26%), Postives = 47/54 (87.04%), Query Frame = 1

Query: 1   MTYYGNVDDVDEEDSTYATTTASEEIHYIETTNEWSQWSDELAESMFTDWQLRN 55
           MT +  VDD+DE DST+AT +A+++IHYIET+NEW++W D+LA+ MF++W+LRN
Sbjct: 152 MTTFDIVDDIDEVDSTHAT-SAADDIHYIETSNEWTRWRDDLAKEMFSEWELRN 204

BLAST of MELO3C016072 vs. NCBI nr
Match: gi|659083293|ref|XP_008442271.1| (PREDICTED: uncharacterized protein LOC103486178 [Cucumis melo])

HSP 1 Score: 75.9 bits (185), Expect = 2.6e-11
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 1

Query: 1   MTYYGNVDDVDEEDSTYATTTASEEIHYIETTNEWSQWSDELAESMFTDWQLRN 55
           MT +   DD+DE DST+ATT   ++IHYIET+NEW+ W DEL E MF+DW+LRN
Sbjct: 105 MTNFNIEDDIDEVDSTHATTVG-DDIHYIETSNEWTPWRDELVEEMFSDWELRN 157

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E5GBB2_CUCME5.3e-1677.36Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCB5_CUCME1.2e-0760.42Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659099182|ref|XP_008450472.1|3.1e-1780.00PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo][more]
gi|307135889|gb|ADN33754.1|7.7e-1677.36retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659121362|ref|XP_008460622.1|7.9e-1366.67PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo][more]
gi|659112451|ref|XP_008456228.1|2.0e-1159.26PREDICTED: uncharacterized protein LOC103496233 [Cucumis melo][more]
gi|659083293|ref|XP_008442271.1|2.6e-1161.11PREDICTED: uncharacterized protein LOC103486178 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C016072T1MELO3C016072T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
MELO3C016072MELO3C025612Melon (DHL92) v3.5.1memeB153