MELO3C016061 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C016061
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPutative reverse transcriptase
Locationchr7 : 18286919 .. 18287341 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATATTTTGTGTTGTTAATGAGCCCTCTATCAGATTTATTCGAGAATGTCTTCAGAGGTTTGGTGAGCTTTCAGGTTTGTTTGCAAATCCTAGGAAAAGCTCTATTTTCATTGCAGGAGTTAATAATGAGAATGCTTCTCGTTTGGCTGCTTGTATGGGTTTTGTCCGTGGAAATCTCCCTGTTCGTTATCTTGGCCTTCCTCTTCTTACTGGTCGGTTACGTTCTAATGATTGTGTTCCTCTGATTCAGCGTATCACTAGTCGAATTCGTTCTCGGTCTGCTCGAGTTCTTTCTTTTGCTGGTAGACTGCAGCTTGTTTGTTCTGTGCTTTGTAGCCTTCAAGTTTACTGGGCTATTGTGTTTGTTCTTCCTGCGTATGTGCATAATGAGGTGGACAAGATTCTCAGATCTTATCTGTAG

mRNA sequence

ATGATATTTTGTGTTGTTAATGAGCCCTCTATCAGATTTATTCGAGAATGTCTTCAGAGGTTTGGAGTTAATAATGAGAATGCTTCTCGTTTGGCTGCTTGTATGGGTTTTGTCCGTGGAAATCTCCCTGTTCGTTATCTTGGCCTTCCTCTTCTTACTGGTCGGTTACGTTCTAATGATTGTGTTCCTCTGATTCAGCGTATCACTAGTCGAATTCGTTCTCGGTCTGCTCGAGTTCTTTCTTTTGCTGGTAGACTGCAGCTTGTTTGTTCTGTGCTTTGTAGCCTTCAAGTTTACTGGGCTATTGTGTTTGTTCTTCCTGCGTATGTGCATAATGAGGTGGACAAGATTCTCAGATCTTATCTGTAG

Coding sequence (CDS)

ATGATATTTTGTGTTGTTAATGAGCCCTCTATCAGATTTATTCGAGAATGTCTTCAGAGGTTTGGAGTTAATAATGAGAATGCTTCTCGTTTGGCTGCTTGTATGGGTTTTGTCCGTGGAAATCTCCCTGTTCGTTATCTTGGCCTTCCTCTTCTTACTGGTCGGTTACGTTCTAATGATTGTGTTCCTCTGATTCAGCGTATCACTAGTCGAATTCGTTCTCGGTCTGCTCGAGTTCTTTCTTTTGCTGGTAGACTGCAGCTTGTTTGTTCTGTGCTTTGTAGCCTTCAAGTTTACTGGGCTATTGTGTTTGTTCTTCCTGCGTATGTGCATAATGAGGTGGACAAGATTCTCAGATCTTATCTGTAG

Protein sequence

MIFCVVNEPSIRFIRECLQRFGVNNENASRLAACMGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSFAGRLQLVCSVLCSLQVYWAIVFVLPAYVHNEVDKILRSYL*
Homology
[Close]
BLAST of MELO3C016061 vs. TrEMBL
Match: A0A0V0IYZ4_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.3e-16
Identity = 50/140 (35.71%), Postives = 77/140 (55.00%), Query Frame = 1 

Query: 1   MIFCVVNEPSIRFIRECLQRF------------------GVNNENASRLAACMGFVRGNL 60
           ++FC  +  S   + EC Q+F                  GV+ +    +    GF +GNL
Sbjct: 341 LLFCRGDVQSTVLLYECFQQFSQVSGLIANQAKSCVYFGGVSKQEQQLILQHTGFTKGNL 400

Query: 61  PVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSFAGRLQLVCSVLCSLQVYWAI 120
           P RYLG+PL + +L  + C PL+ R+   I + + + LS+AGRLQLV SVL S+Q +WA 
Sbjct: 401 PFRYLGVPLSSKKLSISQCQPLLDRMLGIINTWTVKFLSYAGRLQLVQSVLTSIQAFWAQ 460

Query: 121 VFVLPAYVHNEVDKILRSYL 123
           +F+LP  V  +V+ I + +L
Sbjct: 461 IFLLPKKVFQQVEAICKRFL 480

[Close]
BLAST of MELO3C016061 vs. TrEMBL
Match: Q1KUN8_9ROSI (Putative uncharacterized protein OS=Tarenaya spinosa PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.4e-15
Identity = 44/101 (43.56%), Postives = 65/101 (64.36%), Query Frame = 1 

Query: 22  GVNNENASRLAACMGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLS 81
           G+N   AS L A +GF RG LPVRYLG+ L   RL  +D  PL+ R+ ++I S + R LS
Sbjct: 194 GLNGTEASTLCAVIGFTRGYLPVRYLGVSLSPVRLTKSDYQPLLDRVKAKINSWTTRYLS 253

Query: 82  FAGRLQLVCSVLCSLQVYWAIVFVLPAYVHNEVDKILRSYL 123
           +AGRLQLV +V+  +   W ++F+LP +   +VD++   +L
Sbjct: 254 YAGRLQLVGTVIYGMVNAWGMIFMLPKFFTKQVDRLCAGFL 294

[Close]
BLAST of MELO3C016061 vs. TrEMBL
Match: F4NCG1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.5e-15
Identity = 50/140 (35.71%), Postives = 78/140 (55.71%), Query Frame = 1 

Query: 1   MIFCVVNEPSIRFIRECLQRF------------------GVNNENASRLAACMGFVRGNL 60
           ++FC  ++ S+  +    Q+F                  GV++E A  LA  +    G L
Sbjct: 693 LMFCRADKSSLDHMNVAFQKFSHASGLAASHEKSNIYFCGVDDETARELADYVHMQLGEL 752

Query: 61  PVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSFAGRLQLVCSVLCSLQVYWAI 120
           P RYLG+PL + +L    C PL++ IT+R ++  A++LS+AGRLQL+ S+L S+Q YWA 
Sbjct: 753 PFRYLGVPLTSKKLTYAQCKPLVEMITNRAQTWMAKLLSYAGRLQLIKSILSSMQNYWAH 812

Query: 121 VFVLPAYVHNEVDKILRSYL 123
           +F L   V   V+K+ R +L
Sbjct: 813 IFPLSKKVIQAVEKVCRKFL 832

[Close]
BLAST of MELO3C016061 vs. TrEMBL
Match: O64612_ARATH (Putative reverse transcriptase OS=Arabidopsis thaliana GN=At2g18820 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.5e-15
Identity = 48/120 (40.00%), Postives = 72/120 (60.00%), Query Frame = 1 

Query: 3    FCVVNEPSIRFIRECLQRFGVNNENASRLAACMGFVRGNLPVRYLGLPLLTGRLRSNDCV 62
            F   +  +I   +  L    +++E  + + A   F  G+LPVRYLGLPL+T R+   DC+
Sbjct: 983  FAAFSGLNISLEKSTLFMASISSETCASILARFPFDSGSLPVRYLGLPLMTKRMTLADCL 1042

Query: 63   PLIQRITSRIRSRSARVLSFAGRLQLVCSVLCSLQVYWAIVFVLPAYVHNEVDKILRSYL 122
            PL+++I SRI S   R LS+AGRLQL+ SV+ SL  +W   F LP     E+++I  ++L
Sbjct: 1043 PLLEKIRSRISSWKNRFLSYAGRLQLLNSVISSLTKFWISAFRLPRACIREIEQISAAFL 1102

[Close]
BLAST of MELO3C016061 vs. TrEMBL
Match: O81284_ARATH (AT4g02490 protein OS=Arabidopsis thaliana GN=T14P8.10 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 9.9e-15
Identity = 44/101 (43.56%), Postives = 70/101 (69.31%), Query Frame = 1 

Query: 22  GVNNENASRLAACMGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLS 81
           G N E    +AA +G  +G+LPVRYLG+PL++ +++ +D  PL+ RI SR  S +AR LS
Sbjct: 288 GGNFERNRIMAASLGVSQGSLPVRYLGVPLMSQKMKKHDYQPLVDRINSRFTSWTARHLS 347

Query: 82  FAGRLQLVCSVLCSLQVYWAIVFVLPAYVHNEVDKILRSYL 123
           FAGRLQL+ SV+ S   +WA +F+LP    ++++++  ++L
Sbjct: 348 FAGRLQLLKSVIYSTINFWASIFILPNQCLHKLEQMCNAFL 388

[Close]
BLAST of MELO3C016061 vs. TAIR10
Match: AT3G24255.1 (AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein)

HSP 1 Score: 86.3 bits (212), Expect = 1.5e-17
Identity = 46/101 (45.54%), Postives = 62/101 (61.39%), Query Frame = 1 

Query: 22  GVNNENASRLAACMGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLS 81
           GV + + + +     F  G LPVRYLGLPLLT ++ ++D  PL+++I  RI   +AR LS
Sbjct: 3   GVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLS 62

Query: 82  FAGRLQLVCSVLCSLQVYWAIVFVLPAYVHNEVDKILRSYL 123
           FAGRLQL+ SV+ SL  +W   F LP+    E+D I  S+L
Sbjct: 63  FAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFL 103

[Close]
BLAST of MELO3C016061 vs. NCBI nr
Match: gi|659126450|ref|XP_008463188.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 200.3 bits (508), Expect = 2.0e-48
Identity = 106/140 (75.71%), Postives = 112/140 (80.00%), Query Frame = 1 

Query: 1   MIFCVVNEPSIRFIRECLQRFG------------------VNNENASRLAACMGFVRGNL 60
           MIFC  +E SIRFIR+CLQ+FG                  VNNENAS LAACMGFVRGNL
Sbjct: 126 MIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVRGNL 185

Query: 61  PVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSFAGRLQLVCSVLCSLQVYWAI 120
            VRYLGLPLLTGRL SNDC PLIQRITS+IRS +ARVLSFAGR+QLVCSVL SLQVYWA 
Sbjct: 186 SVRYLGLPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWAS 245

Query: 121 VFVLPAYVHNEVDKILRSYL 123
           VFVLPAYVHNEVDKILRSYL
Sbjct: 246 VFVLPAYVHNEVDKILRSYL 265

[Close]
BLAST of MELO3C016061 vs. NCBI nr
Match: gi|659121154|ref|XP_008460525.1| (PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 198.7 bits (504), Expect = 5.7e-48
Identity = 107/140 (76.43%), Postives = 109/140 (77.86%), Query Frame = 1 

Query: 1   MIFCVVNEPSIRFIRECLQRFG------------------VNNENASRLAACMGFVRGNL 60
           MIFC  NEPSIRFIRECLQ+FG                  VNNENAS LA CMGFVRGNL
Sbjct: 70  MIFCAANEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFVRGNL 129

Query: 61  PVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSFAGRLQLVCSVLCSLQVYWAI 120
            VRYLGLPLL GRLRSND  PLIQRITSRIRS +ARVLSFAGRLQLV SVL S QVYWA 
Sbjct: 130 SVRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVHSVLRSFQVYWAS 189

Query: 121 VFVLPAYVHNEVDKILRSYL 123
           VFVLPAYVHNEVDKILRSYL
Sbjct: 190 VFVLPAYVHNEVDKILRSYL 209

[Close]
BLAST of MELO3C016061 vs. NCBI nr
Match: gi|659102432|ref|XP_008452126.1| (PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo])

HSP 1 Score: 186.0 bits (471), Expect = 3.8e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 22  GVNNENASRLAACMGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLS 81
           GVNNENASRLAACMGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLS
Sbjct: 558 GVNNENASRLAACMGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLS 617

Query: 82  FAGRLQLVCSVLCSLQVYWAIVFVLPAYVHNE 114
           FAGRLQLVCSVLCSLQVYWAIVFVLPAYVHNE
Sbjct: 618 FAGRLQLVCSVLCSLQVYWAIVFVLPAYVHNE 649

[Close]
BLAST of MELO3C016061 vs. NCBI nr
Match: gi|659114595|ref|XP_008457134.1| (PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo])

HSP 1 Score: 158.3 bits (399), Expect = 8.6e-36
Identity = 84/101 (83.17%), Postives = 88/101 (87.13%), Query Frame = 1 

Query: 22   GVNNENASRLAACMGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLS 81
            GV++E AS LAA MGF  GNLPVRYLGLPLLTGRLRSNDC PLIQRITS IRS +ARVLS
Sbjct: 911  GVSHEAASHLAASMGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRSWTARVLS 970

Query: 82   FAGRLQLVCSVLCSLQVYWAIVFVLPAYVHNEVDKILRSYL 123
            F G LQLV SVL SLQVYWA +FVLPAYVHNEVDKILRSYL
Sbjct: 971  FFGTLQLVRSVLHSLQVYWASMFVLPAYVHNEVDKILRSYL 1011

[Close]
BLAST of MELO3C016061 vs. NCBI nr
Match: gi|778730244|ref|XP_011659736.1| (PREDICTED: uncharacterized protein LOC105436250 [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 1.6e-26
Identity = 71/95 (74.74%), Postives = 78/95 (82.11%), Query Frame = 1 

Query: 28  ASRLAACMGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSFAGRLQ 87
           AS+LAA MGF  G LPV YLGLPLL GRLRS+DC PLI+RIT+RIRS SAR  SF GRLQ
Sbjct: 43  ASQLAANMGFTIGYLPVCYLGLPLLLGRLRSSDCDPLIRRITNRIRSWSAR-QSFVGRLQ 102

Query: 88  LVCSVLCSLQVYWAIVFVLPAYVHNEVDKILRSYL 123
           LV SVL SLQVYWA VF+LP  VH +VDKILR+YL
Sbjct: 103 LVRSVLRSLQVYWASVFMLPMKVHRDVDKILRAYL 136

The following BLAST results are available for this feature:
BLAST of MELO3C016061 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0V0IYZ4_SOLCH5.3e-1635.71Putative ovule protein OS=Solanum chacoense PE=4 SV=1[more]
Q1KUN8_9ROSI3.4e-1543.56Putative uncharacterized protein OS=Tarenaya spinosa PE=4 SV=1[more]
F4NCG1_BETVU4.5e-1535.71Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1[more]
O64612_ARATH4.5e-1540.00Putative reverse transcriptase OS=Arabidopsis thaliana GN=At2g18820 PE=4 SV=1[more]
O81284_ARATH9.9e-1543.56AT4g02490 protein OS=Arabidopsis thaliana GN=T14P8.10 PE=4 SV=1[more]
BLAST of MELO3C016061 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G24255.11.5e-1745.54 RNA-directed DNA polymerase (reverse transcriptase)-related family p... [more]
BLAST of MELO3C016061 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659126450|ref|XP_008463188.1|2.0e-4875.71PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo][more]
gi|659121154|ref|XP_008460525.1|5.7e-4876.43PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein At1g65750 [Cucum... [more]
gi|659102432|ref|XP_008452126.1|3.8e-44100.00PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo][more]
gi|659114595|ref|XP_008457134.1|8.6e-3683.17PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo][more]
gi|778730244|ref|XP_011659736.1|1.6e-2674.74PREDICTED: uncharacterized protein LOC105436250 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C016061T1MELO3C016061T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR19446REVERSE TRANSCRIPTASEScoord: 24..84
score: 8.9
NoneNo IPR availablePANTHERPTHR19446:SF368SUBFAMILY NOT NAMEDcoord: 24..84
score: 8.9

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C016061Cucurbita moschata (Rifu)cmomeB296
MELO3C016061Watermelon (Charleston Gray)mewcgB454
MELO3C016061Cucurbita pepo (Zucchini)cpemeB198
MELO3C016061Bottle gourd (USVL1VR-Ls)lsimeB270
MELO3C016061Watermelon (97103) v2mewmbB464
MELO3C016061Melon (DHL92) v3.5.1memeB153
MELO3C016061Cucurbita maxima (Rimu)cmameB306