MELO3C015980.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C015980.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Location	chr01 : 32220919 .. 32222157 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCAAGCACTCATACTTTCCCTTCACATTTTATGAAAAGAGCTTGAAATCCCTACAATTTCAACTCACACCATTTTTACCAAGGTAATGGCACCAAAAGGTTTCAAGCTCTTTCACACCCTTTTCTTAGTGCTTGTTTGGCAATGTTGTGGGAAGGTCGGAGCCACTTTCGGTGACTTCACTGGTAGCGTAGAACCCGCTGTCGATAATAAATTCCCCTTCCGTGCCTTTGGATCACACGGCAAACAAGCACCAGCGGTTGCACCAGTGAGCAGCGTCGGCGGAAAAATTCTTGTTGTTTCTCATGGTCATGAAACCAGCACGGCAAAGGGTGCCGGTAGTGTTGTCGTTTCTCATGGTAAAAAAACGGGTGCGAACGGCAACGGCGGAAGTGTCGTTGCTATTTCTAGTGGTCATGAAATCAGCAAGAAGAGTGGTGGTAGTAGTGTTATTGTTTCTCGTGGTGGCAAAACCGGTGTGAAGAACGGTAGTAGTTTGGTTGCGGTTTCTCAAGGTCAAGAAATCACGAAGAAGGGTAGCGGCAGCATCATTGTCGCCCGTGGTTCCAAAACCGGTGTGAATGGAGGCGGTAGTATTGTTGCAGTATCTAGCGGTCACGAAGTGAGTGCAAAGAGTGGCGGCAGTGTTGTCATTTCTCATAGAGGAAAAATCGGTGGGAACATGGGGAGAAGGAGTGTCGTCGTGGCCAGCGGTCAAGAAACTAGAGTGAAGAGCGCCACCAGTACTGTTGTTTCTCATGGACATGGAGCTGGCATGATTCGTGGTGGTGCTGGTTTGTTTTCTCAAGGAATCCATACTAGTAAGAGCAGCAGCAGCAAAAGCATGTTTGCTTCTCACAATGTCCAAAATACAAAGGGAGCTCATGGTATTCACACAAGTGGCAGCAGCAGCGTTGTTTTTCATACTCATCACCAAACTACAAGCACCATTACCGGTAGCGTTGTTTCTCATGGAGCTTTCAATGCTCAACCTTAACAACTTAAGGCTATATGTTGTATTATGCCTAATTCTAAAGCACCATTCAAATTTAAAATTTTTCTTAATTGAATGAAAAGATTTTTTCACCCACACAATACTTTTTGTGTCCAACAACATTATGATAATTTTGTTCTATAACCCAATTTATGTTTCTATGAGAAACTGTATTAATTAAGGCTTTAAAATTGAAATTGTACCCCTTCATTGATATGTGACTTCATTCATATGTAAATTAATTAA

mRNA sequence

ATCCAAGCACTCATACTTTCCCTTCACATTTTATGAAAAGAGCTTGAAATCCCTACAATTTCAACTCACACCATTTTTACCAAGGTAATGGCACCAAAAGGTTTCAAGCTCTTTCACACCCTTTTCTTAGTGCTTGTTTGGCAATGTTGTGGGAAGGTCGGAGCCACTTTCGGTGACTTCACTGGTAGCGTAGAACCCGCTGTCGATAATAAATTCCCCTTCCGTGCCTTTGGATCACACGGCAAACAAGCACCAGCGGTTGCACCAGTGAGCAGCGTCGGCGGAAAAATTCTTGTTGTTTCTCATGGTCATGAAACCAGCACGGCAAAGGGTGCCGGTAGTGTTGTCGTTTCTCATGGTAAAAAAACGGGTGCGAACGGCAACGGCGGAAGTGTCGTTGCTATTTCTAGTGGTCATGAAATCAGCAAGAAGAGTGGTGGTAGTAGTGTTATTGTTTCTCGTGGTGGCAAAACCGGTGTGAAGAACGGTAGTAGTTTGGTTGCGGTTTCTCAAGGTCAAGAAATCACGAAGAAGGGTAGCGGCAGCATCATTGTCGCCCGTGGTTCCAAAACCGGTGTGAATGGAGGCGGTAGTATTGTTGCAGTATCTAGCGGTCACGAAGTGAGTGCAAAGAGTGGCGGCAGTGTTGTCATTTCTCATAGAGGAAAAATCGGTGGGAACATGGGGAGAAGGAGTGTCGTCGTGGCCAGCGGTCAAGAAACTAGAGTGAAGAGCGCCACCAGTACTGTTGTTTCTCATGGACATGGAGCTGGCATGATTCGTGGTGGTGCTGGTTTGTTTTCTCAAGGAATCCATACTAGTAAGAGCAGCAGCAGCAAAAGCATGTTTGCTTCTCACAATGTCCAAAATACAAAGGGAGCTCATGGTATTCACACAAGTGGCAGCAGCAGCGTTGTTTTTCATACTCATCACCAAACTACAAGCACCATTACCGGTAGCGTTGTTTCTCATGGAGCTTTCAATGCTCAACCTTAACAACTTAAGGCTATATGTTGTATTATGCCTAATTCTAAAGCACCATTCAAATTTAAAATTTTTCTTAATTGAATGAAAAGATTTTTTCACCCACACAATACTTTTTGTGTCCAACAACATTATGATAATTTTGTTCTATAACCCAATTTATGTTTCTATGAGAAACTGTATTAATTAAGGCTTTAAAATTGAAATTGTACCCCTTCATTGATATGTGACTTCATTCATATGTAAATTAATTAA

Coding sequence (CDS)

ATGGCACCAAAAGGTTTCAAGCTCTTTCACACCCTTTTCTTAGTGCTTGTTTGGCAATGTTGTGGGAAGGTCGGAGCCACTTTCGGTGACTTCACTGGTAGCGTAGAACCCGCTGTCGATAATAAATTCCCCTTCCGTGCCTTTGGATCACACGGCAAACAAGCACCAGCGGTTGCACCAGTGAGCAGCGTCGGCGGAAAAATTCTTGTTGTTTCTCATGGTCATGAAACCAGCACGGCAAAGGGTGCCGGTAGTGTTGTCGTTTCTCATGGTAAAAAAACGGGTGCGAACGGCAACGGCGGAAGTGTCGTTGCTATTTCTAGTGGTCATGAAATCAGCAAGAAGAGTGGTGGTAGTAGTGTTATTGTTTCTCGTGGTGGCAAAACCGGTGTGAAGAACGGTAGTAGTTTGGTTGCGGTTTCTCAAGGTCAAGAAATCACGAAGAAGGGTAGCGGCAGCATCATTGTCGCCCGTGGTTCCAAAACCGGTGTGAATGGAGGCGGTAGTATTGTTGCAGTATCTAGCGGTCACGAAGTGAGTGCAAAGAGTGGCGGCAGTGTTGTCATTTCTCATAGAGGAAAAATCGGTGGGAACATGGGGAGAAGGAGTGTCGTCGTGGCCAGCGGTCAAGAAACTAGAGTGAAGAGCGCCACCAGTACTGTTGTTTCTCATGGACATGGAGCTGGCATGATTCGTGGTGGTGCTGGTTTGTTTTCTCAAGGAATCCATACTAGTAAGAGCAGCAGCAGCAAAAGCATGTTTGCTTCTCACAATGTCCAAAATACAAAGGGAGCTCATGGTATTCACACAAGTGGCAGCAGCAGCGTTGTTTTTCATACTCATCACCAAACTACAAGCACCATTACCGGTAGCGTTGTTTCTCATGGAGCTTTCAATGCTCAACCTTAA

Protein sequence

MAPKGFKLFHTLFLVLVWQCCGKVGATFGDFTGSVEPAVDNKFPFRAFGSHGKQAPAVAPVSSVGGKILVVSHGHETSTAKGAGSVVVSHGKKTGANGNGGSVVAISSGHEISKKSGGSSVIVSRGGKTGVKNGSSLVAVSQGQEITKKGSGSIIVARGSKTGVNGGGSIVAVSSGHEVSAKSGGSVVISHRGKIGGNMGRRSVVVASGQETRVKSATSTVVSHGHGAGMIRGGAGLFSQGIHTSKSSSSKSMFASHNVQNTKGAHGIHTSGSSSVVFHTHHQTTSTITGSVVSHGAFNAQP

Homology

[Close]

BLAST of MELO3C015980.2 vs. NCBI nr
Match: KGN44963.1 (Ankyrin repeat protein [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 1.9e-40
Identity = 248/302 (82.12%), Postives = 256/302 (84.77%), Query Frame = 0


Query: 1   MAPKGFKLFHTLFLVLVWQCCGKVGATFGDFTGSVEPAVDNKFPFRAFGSHGKQAPAVAP 60
           MAP GFKLFHTLFLVL WQCCGKVGATFGD TGSVEPA+D K P RAFGSHG QA AVAP
Sbjct: 3   MAPNGFKLFHTLFLVLAWQCCGKVGATFGDVTGSVEPALDRKLPIRAFGSHGTQASAVAP 62

Query: 61  VSSVGGKILVVSHGHETSTAK-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           VSSVGGK+LVVS GHE STAK                  XXXXXXXXXXXXXXXXXXXXX
Sbjct: 63  VSSVGGKVLVVSQGHEISTAKSAGSVVVSHGRKTGPNANXXXXXXXXXXXXXXXXXXXXX 122

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           XXXXXXXXXXXXXXXXXXXXXXXXX  XXXXXXXXXXX      XXXXXXXXXXXXXXXX
Sbjct: 123 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGSKTGXXXXXXXXXXXXXXXX 182

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLFS 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AGLFS
Sbjct: 183 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGLFS 242

Query: 241 QGIHTSKSSSSKSMFASHNVQNTKGAHGIHTSGSSSVVFHTHHQTTSTITGSVVSHGAFN 300
            GIHT+   SSKS F+S+N+Q TKGA GIHTSGSSSVV HTHHQTTST++GSV SHGAFN
Sbjct: 243 HGIHTN-HRSSKSFFSSNNIQTTKGADGIHTSGSSSVVVHTHHQTTSTVSGSVFSHGAFN 302

Query: 301 AQ 302
           AQ
Sbjct: 303 AQ 303

[Close]

BLAST of MELO3C015980.2 vs. NCBI nr
Match: XP_022973509.1 (myosin light chain kinase, smooth muscle-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 87.8 bits (216), Expect = 6.8e-14
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 4  KGFKLFHTLFLVLVWQCCGKVGATFGDFTGSVEPAVDNKFPFRAFGSHGKQAPAVAPVSS 63
          KGFKLFHTLFLV+ WQCC KVGATFGD TG+V   +D++F FRA GSH  +AP  AP+ S
Sbjct: 5  KGFKLFHTLFLVVAWQCCAKVGATFGDVTGAVN--LDDQFSFRATGSHDTKAPVTAPIGS 62

[Close]

BLAST of MELO3C015980.2 vs. NCBI nr
Match: XP_022973508.1 (myosin light chain kinase, smooth muscle-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 87.8 bits (216), Expect = 6.8e-14
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 4  KGFKLFHTLFLVLVWQCCGKVGATFGDFTGSVEPAVDNKFPFRAFGSHGKQAPAVAPVSS 63
          KGFKLFHTLFLV+ WQCC KVGATFGD TG+V   +D++F FRA GSH  +AP  AP+ S
Sbjct: 5  KGFKLFHTLFLVVAWQCCAKVGATFGDVTGAVN--LDDQFSFRATGSHDTKAPVTAPIGS 62

[Close]

BLAST of MELO3C015980.2 vs. NCBI nr
Match: XP_022925496.1 (uncharacterized protein LOC111432782 isoform X1 [Cucurbita moschata] >XP_022925497.1 uncharacterized protein LOC111432782 isoform X2 [Cucurbita moschata])

HSP 1 Score: 87.4 bits (215), Expect = 8.9e-14
Identity = 43/69 (62.32%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 4  KGFKLFHTLFLVLVWQCCGKVGATFGDFTGSVEPAVDNKFPFRAFGSHGKQAPAVAPVSS 63
          KGFKLFHTLFLV+ WQ C KVGAT+GD TG V+  +D++F FRAFGSH  Q PA+AP++S
Sbjct: 5  KGFKLFHTLFLVVAWQYCVKVGATYGDVTGVVK--LDHQFSFRAFGSHDTQTPAIAPIAS 64

Query: 64 VGGKILVVS 73
             ++LV S
Sbjct: 65 -STEVLVAS 70

[Close]

BLAST of MELO3C015980.2 vs. NCBI nr
Match: XP_022975301.1 (uncharacterized protein LOC111474444 isoform X3 [Cucurbita maxima])

HSP 1 Score: 87.4 bits (215), Expect = 8.9e-14
Identity = 40/60 (66.67%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 5  GFKLFHTLFLVLVWQCCGKVGATFGDFTGSVEPAVDNKFPFRAFGSHGKQAPAVAPVSSV 64
          GFKLFHT+FLV+VWQ C KVGATFGD TG +   +D++F FRAFGSH  QAP VAP+ S+
Sbjct: 6  GFKLFHTIFLVIVWQYCAKVGATFGDETGVIN--LDHQFSFRAFGSHDTQAPIVAPIGSI 63

[Close]

BLAST of MELO3C015980.2 vs. TrEMBL
Match: tr|A0A0A0K662|A0A0A0K662_CUCSA (Ankyrin repeat protein OS=Cucumis sativus OX=3659 GN=Csa_7G398740 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.3e-40
Identity = 248/302 (82.12%), Postives = 256/302 (84.77%), Query Frame = 0


Query: 1   MAPKGFKLFHTLFLVLVWQCCGKVGATFGDFTGSVEPAVDNKFPFRAFGSHGKQAPAVAP 60
           MAP GFKLFHTLFLVL WQCCGKVGATFGD TGSVEPA+D K P RAFGSHG QA AVAP
Sbjct: 3   MAPNGFKLFHTLFLVLAWQCCGKVGATFGDVTGSVEPALDRKLPIRAFGSHGTQASAVAP 62

Query: 61  VSSVGGKILVVSHGHETSTAK-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           VSSVGGK+LVVS GHE STAK                  XXXXXXXXXXXXXXXXXXXXX
Sbjct: 63  VSSVGGKVLVVSQGHEISTAKSAGSVVVSHGRKTGPNANXXXXXXXXXXXXXXXXXXXXX 122

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           XXXXXXXXXXXXXXXXXXXXXXXXX  XXXXXXXXXXX      XXXXXXXXXXXXXXXX
Sbjct: 123 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGSKTGXXXXXXXXXXXXXXXX 182

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLFS 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AGLFS
Sbjct: 183 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGLFS 242

Query: 241 QGIHTSKSSSSKSMFASHNVQNTKGAHGIHTSGSSSVVFHTHHQTTSTITGSVVSHGAFN 300
            GIHT+   SSKS F+S+N+Q TKGA GIHTSGSSSVV HTHHQTTST++GSV SHGAFN
Sbjct: 243 HGIHTN-HRSSKSFFSSNNIQTTKGADGIHTSGSSSVVVHTHHQTTSTVSGSVFSHGAFN 302

Query: 301 AQ 302
           AQ
Sbjct: 303 AQ 303

[Close]

BLAST of MELO3C015980.2 vs. TrEMBL
Match: tr|A0A0A0K7W7|A0A0A0K7W7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G399280 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.7e-05
Identity = 27/47 (57.45%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 4  KGFKLFHTLFLVLVWQ-CCGKVGATFGDFTGSVEPAVDNKFPFRAFG 50
          +GFKLF TL LV  W+ CC +VGATF D TG V   ++++F FRAFG
Sbjct: 5  RGFKLFQTLCLVFAWKYCCAQVGATFSDATGVVNAGLNHQFSFRAFG 51

[Close]

BLAST of MELO3C015980.2 vs. TrEMBL
Match: tr|A0A0A0K5J0|A0A0A0K5J0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398750 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.8e-05
Identity = 27/46 (58.70%), Postives = 31/46 (67.39%), Query Frame = 0


Query: 4  KGFKLFHTLFLVLVWQCCGKVGATFGDFTGSVEPAVDNKFPFRAFG 50
          +GFKLF TLFLV  WQ C KV ATF D TG V   +++ F FR FG
Sbjct: 3  RGFKLFQTLFLVFAWQHCVKVDATFNDVTGVVNLDLNHHFSFRGFG 48

The following BLAST results are available for this feature:

BLAST of MELO3C015980.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44963.1	1.9e-40	82.12	Ankyrin repeat protein [Cucumis sativus]	[more]
XP_022973509.1	6.8e-14	66.67	myosin light chain kinase, smooth muscle-like isoform X2 [Cucurbita maxima]	[more]
XP_022973508.1	6.8e-14	66.67	myosin light chain kinase, smooth muscle-like isoform X1 [Cucurbita maxima]	[more]
XP_022925496.1	8.9e-14	62.32	uncharacterized protein LOC111432782 isoform X1 [Cucurbita moschata] >XP_0229254...	[more]
XP_022975301.1	8.9e-14	66.67	uncharacterized protein LOC111474444 isoform X3 [Cucurbita maxima]	[more]

BLAST of MELO3C015980.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C015980.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C015980.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K662\|A0A0A0K662_CUCSA	1.3e-40	82.12	Ankyrin repeat protein OS=Cucumis sativus OX=3659 GN=Csa_7G398740 PE=4 SV=1	[more]
tr\|A0A0A0K7W7\|A0A0A0K7W7_CUCSA	1.7e-05	57.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G399280 PE=4 SV=1	[more]
tr\|A0A0A0K5J0\|A0A0A0K5J0_CUCSA	3.8e-05	58.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398750 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016787	hydrolase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C015980.2.1	MELO3C015980.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C015980.2	Cucumber (Gy14) v1	cgymedB368
MELO3C015980.2	Cucurbita maxima (Rimu)	cmamedB373
MELO3C015980.2	Cucurbita maxima (Rimu)	cmamedB930
MELO3C015980.2	Cucurbita moschata (Rifu)	cmomedB359
MELO3C015980.2	Cucurbita pepo (Zucchini)	cpemedB145
MELO3C015980.2	Cucurbita pepo (Zucchini)	cpemedB341
MELO3C015980.2	Wild cucumber (PI 183967)	cpimedB520
MELO3C015980.2	Wild cucumber (PI 183967)	cpimedB525
MELO3C015980.2	Cucumber (Chinese Long) v2	cumedB511
MELO3C015980.2	Bottle gourd (USVL1VR-Ls)	lsimedB201
MELO3C015980.2	Watermelon (Charleston Gray)	medwcgB155
MELO3C015980.2	Watermelon (Charleston Gray)	medwcgB178
MELO3C015980.2	Watermelon (97103) v1	medwmB181
MELO3C015980.2	Watermelon (97103) v1	medwmB206
MELO3C015980.2	Silver-seed gourd	carmedB0112
MELO3C015980.2	Cucumber (Chinese Long) v3	cucmedB538
MELO3C015980.2	Watermelon (97103) v2	medwmbB194
MELO3C015980.2	Watermelon (97103) v2	medwmbB218
MELO3C015980.2	Wax gourd	medwgoB255
MELO3C015980.2	Cucumber (Gy14) v2	cgybmedB467