MELO3C015972.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C015972.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Ankyrin repeat protein
Location	chr01 : 32179288 .. 32179970 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACAACTCAAGGTTTTAAGCTTTTTCACATTTTGTTATTAGTGCTTGCTTGCCTTCGTTGTGTGAAGGTTGGCGCCACTTTCCACGATGTCACTGGCATACTCGGTCTTGGCATCAGCCATCGTTATTCCTTCCGCAATACAATAGGATCTAGCGGTGTTGGGATGTTCTCAAACACCGGTGGTAGCACCACATCGAGCGTTGTAGACACCGAGAGTCCTACACAAGCACCAACACCTGATATTGCCCCCGCTGGACTTGAAACTAATCCAGCAATAAAGAACAGTCATGATTTTATGGCTTTTGTTTCTAAGGATCATGATATTCATTGGAAGAGTGGTAGGAATATTGCTCTTTCTCGTGGTGGTATTGTTACAAATGGTGGTAAAATTGGAGTAAAGAGCAATAATAGTTCAATTTTGCTGTTTCTCATGGTCTTGAAACTTCATTGAGTAGAAATAACAAAGCTTTGTCTTTTGGTATAGAAATTGAGAAGAACAATGTTGCATCTCTTGGTCTCAAAGCTCACACGAGAAAGGTTCATGTTGGTGTTTCTCATGGTGGTAATATTAGTATAAAGAAGAGGGGTAGCATTGTTTCAAATGGTGAAAATTTTGGTTTTAAGAGTAAAACCAATGTTGTGGCTTCTCATGGTCTTGGAATTCAGGGTCCAATGTAA

mRNA sequence

ATGGCAACAACTCAAGGTTTTAAGCTTTTTCACATTTTGTTATTAGTGCTTGCTTGCCTTCGTTGTGTGAAGGTTGGCGCCACTTTCCACGATGTCACTGGCATACTCGGTCTTGGCATCAGCCATCGTTATTCCTTCCGCAATACAATAGGATCTAGCGGTGTTGGGATGTTCTCAAACACCGGTGGTAGCACCACATCGAGCGTTGTAGACACCGAGAGTCCTACACAAGCACCAACACCTGATATTGCCCCCGCTGGACTTGAAACTAATCCAGCAATAAAGAACAGTCATGATTTTATGGCTTTTGTTTCTAAGGATCATGATATTCATTGGAAGAGTGGTAGGAATATTGCTCTTTCTCGTGGTGGTATTGTTACAAATGGTGGTAAAATTGGAGTAAAGAGCAATAATAGTTCAATTTTGCTGTTTCTCATGGTCTTGAAACTTCATTGAGTAGAAATAACAAAGCTTTGTCTTTTGGTATAGAAATTGAGAAGAACAATGTTGCATCTCTTGGTCTCAAAGCTCACACGAGAAAGGTTCATGTTGGTGTTTCTCATGGTGGTAATATTAGTATAAAGAAGAGGGGTAGCATTGTTTCAAATGGTGAAAATTTTGGTTTTAAGAGTAAAACCAATGTTGTGGCTTCTCATGGTCTTGGAATTCAGGGTCCAATGTAA

Coding sequence (CDS)

ATGGCAACAACTCAAGGTTTTAAGCTTTTTCACATTTTGTTATTAGTGCTTGCTTGCCTTCGTTGTGTGAAGGTTGGCGCCACTTTCCACGATGTCACTGGCATACTCGGTCTTGGCATCAGCCATCGTTATTCCTTCCGCAATACAATAGGATCTAGCGGTGTTGGGATGTTCTCAAACACCGGTGGTAGCACCACATCGAGCGTTGTAGACACCGAGAGTCCTACACAAGCACCAACACCTGATATTGCCCCCGCTGGACTTGAAACTAATCCAGCAATAAAGAACAGTCATGATTTTATGGCTTTTGTTTCTAAGGATCATGATATTCATTGGAAGAGTGGTAGGAATATTGCTCTTTCTCGTGGTGGTATTGTTACAAATGGTGGTAAAATTGGAGTAAAGAGCAATAATAGTTCAATTTTGCTGTTTCTCATGGTCTTGAAACTTCATTGA

Protein sequence

MATTQGFKLFHILLLVLACLRCVKVGATFHDVTGILGLGISHRYSFRNTIGSSGVGMFSNTGGSTTSSVVDTESPTQAPTPDIAPAGLETNPAIKNSHDFMAFVSKDHDIHWKSGRNIALSRGGIVTNGGKIGVKSNNSSILLFLMVLKLH

Homology

[Close]

BLAST of MELO3C015972.2 vs. NCBI nr
Match: KGN44971.1 (hypothetical protein Csa_7G404790 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 3.3e-49
Identity = 102/123 (82.93%), Postives = 106/123 (86.18%), Query Frame = 0


Query: 1   MATTQGFKLFHILLLVLACLRCVKVGATFHDVTGILGLGISHRYSFRNTIGSSGVGMFSN 60
           MATTQGF LFH L LVLACL CV VGATFHDVTGILGLGI HRYSF NTIGS GVG+FSN
Sbjct: 1   MATTQGFNLFHTLFLVLACLCCVNVGATFHDVTGILGLGIHHRYSFHNTIGSGGVGLFSN 60

Query: 61  TGGSTTSSVVDTESPTQAPTPDIAPAGLETNPAIKNSHDFMAFVSKDHDIHWKSGRNIAL 120
           TGGST SSVVD ESP QAPT +IAPAGLET+PAI NSHDF  F+SKDHDIHWKSG NIAL
Sbjct: 61  TGGSTASSVVDIESPAQAPTSEIAPAGLETDPAINNSHDFEGFISKDHDIHWKSGSNIAL 120

Query: 121 SRG 124
           S G
Sbjct: 121 SHG 123

[Close]

BLAST of MELO3C015972.2 vs. NCBI nr
Match: KGN44965.1 (hypothetical protein Csa_7G398750 [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-08
Identity = 55/124 (44.35%), Postives = 70/124 (56.45%), Query Frame = 0


Query: 5   QGFKLFHILLLVLACLRCVKVGATFHDVTGILGLGISHRYSFRNTIGSSGVGMFSNTGGS 64
           +GFKLF  L LV A   CVKV ATF+DVTG++ L ++H +SFR   G   +G   NT GS
Sbjct: 3   RGFKLFQTLFLVFAWQHCVKVDATFNDVTGVVNLDLNHHFSFRG-FGWPRIGT-PNTDGS 62

Query: 65  TTSSVVDTESPTQAPTPDIAPAGLET--NPAIKNSH---------DFMAFVSKDHDIHWK 118
             S+V    +  +APT  IAP GL+T  N   K S          +    VSKDH+I+ K
Sbjct: 63  LASTV---NNHAEAPT-GIAPVGLDTPINKGDKVSTFGLEIIKQIESGVVVSKDHEINLK 120

[Close]

BLAST of MELO3C015972.2 vs. NCBI nr
Match: KGN44969.1 (hypothetical protein Csa_7G399280 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 1.6e-08
Identity = 60/152 (39.47%), Postives = 77/152 (50.66%), Query Frame = 0


Query: 1   MATTQGFKLFHILLLVLAC-LRCVKVGATFHDVTGILGLGISHRYSFRNTIGSSGVGMFS 60
           M   +GFKLF  L LV A    C +VGATF D TG++  G++H++SFR   G   +G   
Sbjct: 1   MEMARGFKLFQTLCLVFAWKYCCAQVGATFSDATGVVNAGLNHQFSFR-AFGWPHIGT-P 60

Query: 61  NTGGSTTSSVVDTESPTQAPTPDIAPAGLETN------------PAIKNSHDFMAFVSKD 120
           +  GS TS+ V  +   +AP   IAP GLET               IK      A VS D
Sbjct: 61  DVDGSITST-VKKQIHAEAPA-GIAPVGLETMINKEDKVQSYDLDIIKQIKGGGAVVSHD 120

Query: 121 HDIHWKSGRNIALSRGGIVTNGGKIGVKSNNS 140
           H+ +  SG NIA S      +GGK+ VKS  S
Sbjct: 121 HESNLNSGENIAFS------HGGKVSVKSKGS 142

[Close]

BLAST of MELO3C015972.2 vs. NCBI nr
Match: XP_023004881.1 (uncharacterized protein LOC111498059 [Cucurbita maxima])

HSP 1 Score: 64.7 bits (156), Expect = 3.1e-07
Identity = 52/154 (33.77%), Postives = 73/154 (47.40%), Query Frame = 0


Query: 1   MATTQGFKLFHILLLVLACLRCVKVGATFHDVTGILGLGISHRYSFRNTIGSSGVGMFSN 60
           MA  +GF + H L LVLA   C ++GATF+DVTG++G G +HR+SFR + G   +G+   
Sbjct: 1   MAAVRGFNIVHALFLVLAWECCARLGATFNDVTGVIGQGRNHRFSFR-SFGDHYIGISKF 60

Query: 61  TGGSTTSSVVDTESPTQAPTPDIAPAGL----ETNPAIKNSHDFMAFVSKDHDIHWKSGR 120
              +  SS V  +    +   +I   G        P I     F    SK H+I  K G 
Sbjct: 61  DHTAIQSSEVSVDDKASSFRNEIKKGGAAFVGREVPKINGGGGF----SKGHEIIRKRGG 120

Query: 121 NIALSRGGIVT--------NGGKIGVKSNNSSIL 143
           NI  S GG +         NGG+   K   + +L
Sbjct: 121 NIVYSYGGKILPVGLKRSGNGGETSSKELGADVL 149

[Close]

BLAST of MELO3C015972.2 vs. NCBI nr
Match: XP_022960412.1 (uncharacterized protein LOC111461146 [Cucurbita moschata])

HSP 1 Score: 60.8 bits (146), Expect = 4.5e-06
Identity = 52/146 (35.62%), Postives = 72/146 (49.32%), Query Frame = 0


Query: 1   MATTQGFKLFHILLLVLACLRCVKVGATFHDVTGILGLGISHRYSFRNTIGSS--GVGMF 60
           MA  +GF + H L LVLA   C ++GATF+DVTG++G G +HR+SFR + G    G+  F
Sbjct: 1   MAAVRGFNIVHALFLVLAWECCARLGATFNDVTGVIGKGRNHRFSFR-SFGDHHIGISKF 60

Query: 61  SNTGGSTTSSVVDTESPTQAPTPDIAPAGL--ETNPAIKNSHDFMAFVSKDHDIHWKSGR 120
            +T   +    VD ++ +         AG      P I     F    SK H+I  K G 
Sbjct: 61  DHTAIQSPEVSVDDKASSFRNEIKKDGAGFVGREVPKINGGGGF----SKGHEIIRKRGG 120

Query: 121 NIALSRGGIVTNGG--KIGVKSNNSS 141
           NI  S GG +   G  + G+    SS
Sbjct: 121 NIVYSYGGKILPVGLKRSGIGGETSS 141

[Close]

BLAST of MELO3C015972.2 vs. TrEMBL
Match: tr|A0A0A0KB06|A0A0A0KB06_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G404790 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 2.2e-49
Identity = 102/123 (82.93%), Postives = 106/123 (86.18%), Query Frame = 0


Query: 1   MATTQGFKLFHILLLVLACLRCVKVGATFHDVTGILGLGISHRYSFRNTIGSSGVGMFSN 60
           MATTQGF LFH L LVLACL CV VGATFHDVTGILGLGI HRYSF NTIGS GVG+FSN
Sbjct: 1   MATTQGFNLFHTLFLVLACLCCVNVGATFHDVTGILGLGIHHRYSFHNTIGSGGVGLFSN 60

Query: 61  TGGSTTSSVVDTESPTQAPTPDIAPAGLETNPAIKNSHDFMAFVSKDHDIHWKSGRNIAL 120
           TGGST SSVVD ESP QAPT +IAPAGLET+PAI NSHDF  F+SKDHDIHWKSG NIAL
Sbjct: 61  TGGSTASSVVDIESPAQAPTSEIAPAGLETDPAINNSHDFEGFISKDHDIHWKSGSNIAL 120

Query: 121 SRG 124
           S G
Sbjct: 121 SHG 123

[Close]

BLAST of MELO3C015972.2 vs. TrEMBL
Match: tr|A0A0A0K5J0|A0A0A0K5J0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398750 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 8.3e-09
Identity = 55/124 (44.35%), Postives = 70/124 (56.45%), Query Frame = 0


Query: 5   QGFKLFHILLLVLACLRCVKVGATFHDVTGILGLGISHRYSFRNTIGSSGVGMFSNTGGS 64
           +GFKLF  L LV A   CVKV ATF+DVTG++ L ++H +SFR   G   +G   NT GS
Sbjct: 3   RGFKLFQTLFLVFAWQHCVKVDATFNDVTGVVNLDLNHHFSFRG-FGWPRIGT-PNTDGS 62

Query: 65  TTSSVVDTESPTQAPTPDIAPAGLET--NPAIKNSH---------DFMAFVSKDHDIHWK 118
             S+V    +  +APT  IAP GL+T  N   K S          +    VSKDH+I+ K
Sbjct: 63  LASTV---NNHAEAPT-GIAPVGLDTPINKGDKVSTFGLEIIKQIESGVVVSKDHEINLK 120

[Close]

BLAST of MELO3C015972.2 vs. TrEMBL
Match: tr|A0A0A0K7W7|A0A0A0K7W7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G399280 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.1e-08
Identity = 60/152 (39.47%), Postives = 77/152 (50.66%), Query Frame = 0


Query: 1   MATTQGFKLFHILLLVLAC-LRCVKVGATFHDVTGILGLGISHRYSFRNTIGSSGVGMFS 60
           M   +GFKLF  L LV A    C +VGATF D TG++  G++H++SFR   G   +G   
Sbjct: 1   MEMARGFKLFQTLCLVFAWKYCCAQVGATFSDATGVVNAGLNHQFSFR-AFGWPHIGT-P 60

Query: 61  NTGGSTTSSVVDTESPTQAPTPDIAPAGLETN------------PAIKNSHDFMAFVSKD 120
           +  GS TS+ V  +   +AP   IAP GLET               IK      A VS D
Sbjct: 61  DVDGSITST-VKKQIHAEAPA-GIAPVGLETMINKEDKVQSYDLDIIKQIKGGGAVVSHD 120

Query: 121 HDIHWKSGRNIALSRGGIVTNGGKIGVKSNNS 140
           H+ +  SG NIA S      +GGK+ VKS  S
Sbjct: 121 HESNLNSGENIAFS------HGGKVSVKSKGS 142

The following BLAST results are available for this feature:

BLAST of MELO3C015972.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44971.1	3.3e-49	82.93	hypothetical protein Csa_7G404790 [Cucumis sativus]	[more]
KGN44965.1	1.3e-08	44.35	hypothetical protein Csa_7G398750 [Cucumis sativus]	[more]
KGN44969.1	1.6e-08	39.47	hypothetical protein Csa_7G399280 [Cucumis sativus]	[more]
XP_023004881.1	3.1e-07	33.77	uncharacterized protein LOC111498059 [Cucurbita maxima]	[more]
XP_022960412.1	4.5e-06	35.62	uncharacterized protein LOC111461146 [Cucurbita moschata]	[more]

BLAST of MELO3C015972.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C015972.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C015972.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KB06\|A0A0A0KB06_CUCSA	2.2e-49	82.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G404790 PE=4 SV=1	[more]
tr\|A0A0A0K5J0\|A0A0A0K5J0_CUCSA	8.3e-09	44.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398750 PE=4 SV=1	[more]
tr\|A0A0A0K7W7\|A0A0A0K7W7_CUCSA	1.1e-08	39.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G399280 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C015972.2.1	MELO3C015972.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..86

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C015972.2	Cucumber (Gy14) v2	cgybmedB467
MELO3C015972.2	Cucumber (Gy14) v1	cgymedB368
MELO3C015972.2	Cucurbita maxima (Rimu)	cmamedB373
MELO3C015972.2	Cucurbita maxima (Rimu)	cmamedB930
MELO3C015972.2	Cucurbita moschata (Rifu)	cmomedB359
MELO3C015972.2	Cucurbita pepo (Zucchini)	cpemedB145
MELO3C015972.2	Cucurbita pepo (Zucchini)	cpemedB341
MELO3C015972.2	Wild cucumber (PI 183967)	cpimedB520
MELO3C015972.2	Wild cucumber (PI 183967)	cpimedB525
MELO3C015972.2	Cucumber (Chinese Long) v2	cumedB511
MELO3C015972.2	Bottle gourd (USVL1VR-Ls)	lsimedB201
MELO3C015972.2	Watermelon (Charleston Gray)	medwcgB155
MELO3C015972.2	Watermelon (97103) v1	medwmB181
MELO3C015972.2	Silver-seed gourd	carmedB0112
MELO3C015972.2	Cucumber (Chinese Long) v3	cucmedB538
MELO3C015972.2	Watermelon (97103) v2	medwmbB194
MELO3C015972.2	Watermelon (97103) v2	medwmbB218
MELO3C015972.2	Wax gourd	medwgoB255