MELO3C015952 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C015952
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionUbiquinone biosynthesis protein COQ4 homolog, mitochondrial
Locationchr1 : 30696262 .. 30696519 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGTATAGGATGCATAATAAAAAATATTCACATGGAGGTGGAGATTTTGCAAATACTGATGTGGTCAGTACTGATACACAACCATCTAAGGAAACTGATGACTGGTGGGATACACTTGAAGACATACCAACAGGTTTGGAGAATAAATCAACCAGCATTTGGCCAGATATTATTGATGAATTTATAGATAACAATACAATCCCAATGGAAAATTCTGATCAACCTCCACAACTAGACGATGATCAAGAAAGTAAATGA

mRNA sequence

AAGTATAGGATGCATAATAAAAAATATTCACATGGAGGTGGAGATTTTGCAAATACTGATGTGGTCAGTACTGATACACAACCATCTAAGGAAACTGATGACTGGTGGGATACACTTGAAGACATACCAACAGGTTTGGAGAATAAATCAACCAGCATTTGGCCAGATATTATTGATGAATTTATAGATAACAATACAATCCCAATGGAAAATTCTGATCAACCTCCACAACTAGACGATGATCAAGAAAGTAAATGA

Coding sequence (CDS)

AAGTATAGGATGCATAATAAAAAATATTCACATGGAGGTGGAGATTTTGCAAATACTGATGTGGTCAGTACTGATACACAACCATCTAAGGAAACTGATGACTGGTGGGATACACTTGAAGACATACCAACAGGTTTGGAGAATAAATCAACCAGCATTTGGCCAGATATTATTGATGAATTTATAGATAACAATACAATCCCAATGGAAAATTCTGATCAACCTCCACAACTAGACGATGATCAAGAAAGTAAATGA

Protein sequence

KYRMHNKKYSHGGGDFANTDVVSTDTQPSKETDDWWDTLEDIPTGLENKSTSIWPDIIDEFIDNNTIPMENSDQPPQLDDDQESK*
Homology
[Close]
BLAST of MELO3C015952 vs. TrEMBL
Match: A0A0A0K5M5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G405910 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.3e-18
Identity = 56/104 (53.85%), Postives = 66/104 (63.46%), Query Frame = 1 

Query: 1   KYRMHNKKYSHGGGDFANTDVVSTD----------------TQPSKETDDWWDTLEDIPT 60
           KYR++ KK +HG GDFAN+DVV+                  TQPS E D+WWDTLED+  
Sbjct: 289 KYRLNIKKDTHGSGDFANSDVVTNKQTIPKAQNVQQETPPITQPSNEIDNWWDTLEDLAI 348

Query: 61  GLENKST-SIWPDIIDE-FIDNNTIP---MENSDQPPQLDDDQE 84
           GLENKST SIWPD  DE F +NN IP   MEN  QPPQL D ++
Sbjct: 349 GLENKSTSSIWPDFNDELFKENNIIPTWRMENFYQPPQLGDQEK 392

[Close]
BLAST of MELO3C015952 vs. NCBI nr
Match: gi|778730415|ref|XP_011659779.1| (PREDICTED: two-component response regulator EHD1-like [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 3.3e-18
Identity = 56/104 (53.85%), Postives = 66/104 (63.46%), Query Frame = 1 

Query: 1   KYRMHNKKYSHGGGDFANTDVVSTD----------------TQPSKETDDWWDTLEDIPT 60
           KYR++ KK +HG GDFAN+DVV+                  TQPS E D+WWDTLED+  
Sbjct: 288 KYRLNIKKDTHGSGDFANSDVVTNKQTIPKAQNVQQETPPITQPSNEIDNWWDTLEDLAI 347

Query: 61  GLENKST-SIWPDIIDE-FIDNNTIP---MENSDQPPQLDDDQE 84
           GLENKST SIWPD  DE F +NN IP   MEN  QPPQL D ++
Sbjct: 348 GLENKSTSSIWPDFNDELFKENNIIPTWRMENFYQPPQLGDQEK 391

[Close]
BLAST of MELO3C015952 vs. NCBI nr
Match: gi|700189752|gb|KGN44985.1| (hypothetical protein Csa_7G405910 [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 3.3e-18
Identity = 56/104 (53.85%), Postives = 66/104 (63.46%), Query Frame = 1 

Query: 1   KYRMHNKKYSHGGGDFANTDVVSTD----------------TQPSKETDDWWDTLEDIPT 60
           KYR++ KK +HG GDFAN+DVV+                  TQPS E D+WWDTLED+  
Sbjct: 289 KYRLNIKKDTHGSGDFANSDVVTNKQTIPKAQNVQQETPPITQPSNEIDNWWDTLEDLAI 348

Query: 61  GLENKST-SIWPDIIDE-FIDNNTIP---MENSDQPPQLDDDQE 84
           GLENKST SIWPD  DE F +NN IP   MEN  QPPQL D ++
Sbjct: 349 GLENKSTSSIWPDFNDELFKENNIIPTWRMENFYQPPQLGDQEK 392

The following BLAST results are available for this feature:
BLAST of MELO3C015952 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5M5_CUCSA2.3e-1853.85Uncharacterized protein OS=Cucumis sativus GN=Csa_7G405910 PE=4 SV=1[more]
BLAST of MELO3C015952 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778730415|ref|XP_011659779.1|3.3e-1853.85PREDICTED: two-component response regulator EHD1-like [Cucumis sativus][more]
gi|700189752|gb|KGN44985.1|3.3e-1853.85hypothetical protein Csa_7G405910 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0000160 phosphorelay signal transduction system
cellular_component GO:0005575 cellular_component
cellular_component GO:0005622 intracellular
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C015952T1MELO3C015952T1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C015952Csa7G405910Cucumber (Chinese Long) v2cumeB532
MELO3C015952CSPI07G17870Wild cucumber (PI 183967)cpimeB540
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C015952Cucumber (Chinese Long) v2cumeB283
MELO3C015952Watermelon (Charleston Gray)mewcgB162
MELO3C015952Watermelon (Charleston Gray)mewcgB188
MELO3C015952Watermelon (97103) v1mewmB184
MELO3C015952Watermelon (97103) v1mewmB216
MELO3C015952Cucurbita pepo (Zucchini)cpemeB118
MELO3C015952Cucurbita pepo (Zucchini)cpemeB293
MELO3C015952Bottle gourd (USVL1VR-Ls)lsimeB192
MELO3C015952Bottle gourd (USVL1VR-Ls)lsimeB252
MELO3C015952Cucumber (Gy14) v2cgybmeB470
MELO3C015952Silver-seed gourdcarmeB0110
MELO3C015952Silver-seed gourdcarmeB0566
MELO3C015952Silver-seed gourdcarmeB0810
MELO3C015952Cucumber (Chinese Long) v3cucmeB279
MELO3C015952Cucumber (Chinese Long) v3cucmeB471
MELO3C015952Cucumber (Chinese Long) v3cucmeB550
MELO3C015952Watermelon (97103) v2mewmbB175
MELO3C015952Watermelon (97103) v2mewmbB209
MELO3C015952Wax gourdmewgoB197
MELO3C015952Wax gourdmewgoB200
MELO3C015952Wax gourdmewgoB254
MELO3C015952Melon (DHL92) v3.5.1memeB044
MELO3C015952Melon (DHL92) v3.5.1memeB096
MELO3C015952Cucumber (Gy14) v1cgymeB108
MELO3C015952Cucumber (Gy14) v1cgymeB371
MELO3C015952Cucurbita maxima (Rimu)cmameB320
MELO3C015952Cucurbita maxima (Rimu)cmameB831
MELO3C015952Cucurbita moschata (Rifu)cmomeB313
MELO3C015952Cucurbita moschata (Rifu)cmomeB815
MELO3C015952Wild cucumber (PI 183967)cpimeB274
MELO3C015952Wild cucumber (PI 183967)cpimeB461