MELO3C015947.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C015947.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr01 : 31957855 .. 31958070 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAGGGAATGGATTTGGGAGAAGCAGAGGGGGGAGAGTAATAATAGTAAGGAAAATACGGTAAAATTGGATTCGGTGGCGGCGGAGCAATGCCTGGAAATTGGCCACCGTCGGACGGAGGGTACGGCTGGACAGAGGACGGCGGCGGCGGAGAAGGGTAGACGCATGCATCGCAGGAGGGAGGCGAGGGAGGAGGAGGGCATTGAGAAGTAG

mRNA sequence

ATGAAAAGGGAATGGATTTGGGAGAAGCAGAGGGGGGAGAGTAATAATAGTAAGGAAAATACGGTAAAATTGGATTCGGTGGCGGCGGAGCAATGCCTGGAAATTGGCCACCGTCGGACGGAGGGTACGGCTGGACAGAGGACGGCGGCGGCGGAGAAGGGTAGACGCATGCATCGCAGGAGGGAGGCGAGGGAGGAGGAGGGCATTGAGAAGTAG

Coding sequence (CDS)

ATGAAAAGGGAATGGATTTGGGAGAAGCAGAGGGGGGAGAGTAATAATAGTAAGGAAAATACGGTAAAATTGGATTCGGTGGCGGCGGAGCAATGCCTGGAAATTGGCCACCGTCGGACGGAGGGTACGGCTGGACAGAGGACGGCGGCGGCGGAGAAGGGTAGACGCATGCATCGCAGGAGGGAGGCGAGGGAGGAGGAGGGCATTGAGAAGTAG

Protein sequence

MKREWIWEKQRGESNNSKENTVKLDSVAAEQCLEIGHRRTEGTAGQRTAAAEKGRRMHRRREAREEEGIEK

Homology

[Close]

BLAST of MELO3C015947.2 vs. NCBI nr
Match: KGN44991.1 (hypothetical protein Csa_7G405960 [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 1.4e-21
Identity = 61/71 (85.92%), Postives = 61/71 (85.92%), Query Frame = 0


Query: 1  MKREWIWEKQRGESNNSKENTVKLDSVAAEQCLEIGHRRTEGTAGQRTAAAEKGRRMHRR 60
          MK E IWEKQRGESNNSKENTVKL S  AEQCLEIGHRRTEGTAGQR AA  KGRRMHR 
Sbjct: 1  MKMERIWEKQRGESNNSKENTVKLGSAEAEQCLEIGHRRTEGTAGQRMAAEGKGRRMHRT 60

Query: 61 REAREEEGIEK 72
          REAR EEGIEK
Sbjct: 61 REARVEEGIEK 71

[Close]

BLAST of MELO3C015947.2 vs. TrEMBL
Match: tr|A0A0A0KB51|A0A0A0KB51_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G405960 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 8.9e-22
Identity = 61/71 (85.92%), Postives = 61/71 (85.92%), Query Frame = 0


Query: 1  MKREWIWEKQRGESNNSKENTVKLDSVAAEQCLEIGHRRTEGTAGQRTAAAEKGRRMHRR 60
          MK E IWEKQRGESNNSKENTVKL S  AEQCLEIGHRRTEGTAGQR AA  KGRRMHR 
Sbjct: 1  MKMERIWEKQRGESNNSKENTVKLGSAEAEQCLEIGHRRTEGTAGQRMAAEGKGRRMHRT 60

Query: 61 REAREEEGIEK 72
          REAR EEGIEK
Sbjct: 61 REARVEEGIEK 71

The following BLAST results are available for this feature:

BLAST of MELO3C015947.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44991.1	1.4e-21	85.92	hypothetical protein Csa_7G405960 [Cucumis sativus]	[more]

BLAST of MELO3C015947.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C015947.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C015947.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KB51\|A0A0A0KB51_CUCSA	8.9e-22	85.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G405960 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C015947.2.1	MELO3C015947.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..71

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C015947.2	Csa7G405960	Cucumber (Chinese Long) v2	cumedB511
MELO3C015947.2	CSPI07G17920	Wild cucumber (PI 183967)	cpimedB525
MELO3C015947.2	CmoCh08G004400	Cucurbita moschata (Rifu)	cmomedB919
MELO3C015947.2	CsGy7G016380	Cucumber (Gy14) v2	cgybmedB467
MELO3C015947.2	Bhi09G000782	Wax gourd	medwgoB255

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C015947.2	Bottle gourd (USVL1VR-Ls)	lsimedB201
MELO3C015947.2	Bottle gourd (USVL1VR-Ls)	lsimedB266
MELO3C015947.2	Watermelon (Charleston Gray)	medwcgB155
MELO3C015947.2	Watermelon (Charleston Gray)	medwcgB185
MELO3C015947.2	Watermelon (97103) v1	medwmB181
MELO3C015947.2	Watermelon (97103) v1	medwmB213
MELO3C015947.2	Silver-seed gourd	carmedB0112
MELO3C015947.2	Silver-seed gourd	carmedB0573
MELO3C015947.2	Silver-seed gourd	carmedB0767
MELO3C015947.2	Silver-seed gourd	carmedB0821
MELO3C015947.2	Cucumber (Chinese Long) v3	cucmedB272
MELO3C015947.2	Cucumber (Chinese Long) v3	cucmedB461
MELO3C015947.2	Cucumber (Chinese Long) v3	cucmedB538
MELO3C015947.2	Watermelon (97103) v2	medwmbB161
MELO3C015947.2	Watermelon (97103) v2	medwmbB182
MELO3C015947.2	Watermelon (97103) v2	medwmbB194
MELO3C015947.2	Wax gourd	medwgoB199
MELO3C015947.2	Wax gourd	medwgoB202
MELO3C015947.2	Cucumber (Gy14) v2	cgybmedB238
MELO3C015947.2	Cucumber (Gy14) v1	cgymedB106
MELO3C015947.2	Cucumber (Gy14) v1	cgymedB368
MELO3C015947.2	Cucurbita maxima (Rimu)	cmamedB251
MELO3C015947.2	Cucurbita maxima (Rimu)	cmamedB373
MELO3C015947.2	Cucurbita maxima (Rimu)	cmamedB459
MELO3C015947.2	Cucurbita maxima (Rimu)	cmamedB930
MELO3C015947.2	Cucurbita moschata (Rifu)	cmomedB234
MELO3C015947.2	Cucurbita moschata (Rifu)	cmomedB359
MELO3C015947.2	Cucurbita moschata (Rifu)	cmomedB446
MELO3C015947.2	Cucurbita pepo (Zucchini)	cpemedB145
MELO3C015947.2	Cucurbita pepo (Zucchini)	cpemedB341
MELO3C015947.2	Cucurbita pepo (Zucchini)	cpemedB350
MELO3C015947.2	Cucurbita pepo (Zucchini)	cpemedB598
MELO3C015947.2	Wild cucumber (PI 183967)	cpimedB269
MELO3C015947.2	Cucumber (Chinese Long) v2	cumedB268
MELO3C015947.2	Melon (DHL92) v3.6.1	medmedB043
MELO3C015947.2	Melon (DHL92) v3.6.1	medmedB096