MELO3C015747 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C015747
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	F-box and associated interaction domains-containing protein
Location	chr1 : 28007387 .. 28008046 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTCTTCTTCAGACTTCTTTGAAGCCAAATTGATATTATGGTGATTCTCGATATCATTGAATTTCAGCCATCCATTCCCAATTCACACCATGCCGAACCACCGTTCTCTTTGCCAGAAATCATGCTCTTCCTGTCGCCGTCTCCGTCGTCACCAAGTCACTCGTCTTCTGACGATTTACCGACTCACTCCACTTGGTTGAGTAGACTCGTTCAGAACCCTACATCAACTTTGCAAAATCTTTATGAACCTCATCTCTATATCTCGCCGGAGCCTTACATATTTGCTCAGTTTTACACCTTTACTCTCGAGTCATACTTGTTGATGATCTGTTGCATTCTTGAGAACCGCCTTGCGACGCCAAGTGAGATACACGCTGCCACATCGCGATCTGTTCTCAAGTCATGGAGAACCGTGTGGAAGGACCGAAAAAGAGAACAACGAAGACAAATAGAGAAGAAGAAGAAATGTACCTTGGGTAGAGAAAAACGGAGGAAAACAGAGAAGAAGAGGAAATGTACCTCTTGGGCAGAGAAAAACGGAGTTGTTCGTCAGAGGTGTTCTTCCTTGGACGATTTCGTCGAAGCTATTCATCCCTTGGGCAGAGAACAAAGAAGTTGTTCGTCCCTAGGGTTATGGAGGAAAATTGCGTGAAGAAAGGG

mRNA sequence

AGTCTTCTTCAGACTTCTTTGAAGCCAAATTGATATTATGGTGATTCTCGATATCATTGAATTTCAGCCATCCATTCCCAATTCACACCATGCCGAACCACCGTTCTCTTTGCCAGAAATCATGCTCTTCCTGTCGCCGTCTCCGTCGTCACCAAGTCACTCGTCTTCTGACGATTTACCGACTCACTCCACTTGGTTGAGTAGACTCGTTCAGAACCCTACATCAACTTTGCAAAATCTTTATGAACCTCATCTCTATATCTCGCCGGAGCCTTACATATTTGCTCAGTTTTACACCTTTACTCTCGAGTCATACTTGTTGATGATCTGTTGCATTCTTGAGAACCGCCTTGCGACGCCAAGTGAGATACACGCTGCCACATCGCGATCTGTTCTCAAGTCATGGAGAACCGTGTGGAAGGACCGAAAAAGAGAACAACGAAGACAAATAGAGAAGAAGAAGAAATGTACCTTGGGTAGAGAAAAACGGAGGAAAACAGAGAAGAAGAGGAAATGTACCTCTTGGGCAGAGAAAAACGGAGTTGTTCGTCAGAGGTGTTCTTCCTTGGACGATTTCGTCGAAGCTATTCATCCCTTGGGCAGAGAACAAAGAAGTTGTTCGTCCCTAGGGTTATGGAGGAAAATTGCGTGAAGAAAGGG

Coding sequence (CDS)

ATGGTGATTCTCGATATCATTGAATTTCAGCCATCCATTCCCAATTCACACCATGCCGAACCACCGTTCTCTTTGCCAGAAATCATGCTCTTCCTGTCGCCGTCTCCGTCGTCACCAAGTCACTCGTCTTCTGACGATTTACCGACTCACTCCACTTGGTTGAGTAGACTCGTTCAGAACCCTACATCAACTTTGCAAAATCTTTATGAACCTCATCTCTATATCTCGCCGGAGCCTTACATATTTGCTCAGTTTTACACCTTTACTCTCGAGTCATACTTGTTGATGATCTGTTGCATTCTTGAGAACCGCCTTGCGACGCCAAGTGAGATACACGCTGCCACATCGCGATCTGTTCTCAAGTCATGGAGAACCGTGTGGAAGGACCGAAAAAGAGAACAACGAAGACAAATAGAGAAGAAGAAGAAATGTACCTTGGGTAGAGAAAAACGGAGGAAAACAGAGAAGAAGAGGAAATGTACCTCTTGGGCAGAGAAAAACGGAGTTGTTCGTCAGAGGTGTTCTTCCTTGGACGATTTCGTCGAAGCTATTCATCCCTTGGGCAGAGAACAAAGAAGTTGTTCGTCCCTAGGGTTATGGAGGAAAATTGCGTGA

Protein sequence

MVILDIIEFQPSIPNSHHAEPPFSLPEIMLFLSPSPSSPSHSSSDDLPTHSTWLSRLVQNPTSTLQNLYEPHLYISPEPYIFAQFYTFTLESYLLMICCILENRLATPSEIHAATSRSVLKSWRTVWKDRKREQRRQIEKKKKCTLGREKRRKTEKKRKCTSWAEKNGVVRQRCSSLDDFVEAIHPLGREQRSCSSLGLWRKIA*

Homology

[Close]

BLAST of MELO3C015747 vs. TrEMBL
Match: A0A0A0L3S8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G126100 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.4e-53
Identity = 108/128 (84.38%), Postives = 114/128 (89.06%), Query Frame = 1


Query: 6   IIEFQPSIPNSHHAEPPFSLPEIMLFLSPSPSSPSHSSSDDLPTHSTWLSRLVQNPTSTL 65
           IIE QPSIPNSHHAEPPFSLPEI+LF SPSPSSPSHSSSDD PTHST LS+LVQNPTST 
Sbjct: 27  IIESQPSIPNSHHAEPPFSLPEIVLFRSPSPSSPSHSSSDDSPTHSTRLSQLVQNPTSTS 86

Query: 66  QNLYEPHLYISPEPYIFAQFYTFTLESYLLMICCILENRLATPSEIHAATSRSVLKSWRT 125
           QNL+EP LYISPEP+I AQFYTF  ES+ LMI CILENRLATPSEI AATSRSVLKSWRT
Sbjct: 87  QNLHEPPLYISPEPHISAQFYTFNPESHSLMIRCILENRLATPSEIRAATSRSVLKSWRT 146

Query: 126 VWKDRKRE 134
           VWKDR  +
Sbjct: 147 VWKDRNED 154

[Close]

BLAST of MELO3C015747 vs. TrEMBL
Match: W9RE78_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022436 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.2e-26
Identity = 73/132 (55.30%), Postives = 87/132 (65.91%), Query Frame = 1


Query: 10  QPSIPNSHHAEPPFSLPEIMLFLSPSPSS---PSHSSSDDLPTHSTWLSRLVQN--PTST 69
           QPSIPN H  +PPFSLPEI++F S S SS   PS   +DD+ TH         +  PT  
Sbjct: 48  QPSIPNPHD-DPPFSLPEIVIFRSSSSSSSPSPSDDENDDVSTHLPPNPNPNSSILPTMN 107

Query: 70  LQNLYEPH---LYISPEPYIFAQFYTFTLESYLLMICCILENRLATPSEIHAATSRSVLK 129
            QN   P+   L+ISPEP+I +QFYTF  ES+ LMI C+LE RLATP EI AAT R+VLK
Sbjct: 108 NQNQNNPNSQPLFISPEPHISSQFYTFNPESHSLMIRCLLERRLATPPEIRAATPRAVLK 167

Query: 130 SWRTVWKDRKRE 134
           SWR VWKDR  +
Sbjct: 168 SWRAVWKDRNED 178

[Close]

BLAST of MELO3C015747 vs. TrEMBL
Match: A0A067H1W8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g006579mg PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.0e-24
Identity = 71/136 (52.21%), Postives = 84/136 (61.76%), Query Frame = 1


Query: 8   EFQPSIPNSHHAEPP--------FSLPEIMLFLSPSPSSPSHSSS--DDLPTHSTWLSRL 67
           E QPSI N +H   P         SLPEI+LF + S  SPSHSSS  DD  T+ T    +
Sbjct: 34  ESQPSIHNHNHDHNPNHDDPVSFSSLPEIVLFRTSSEESPSHSSSENDDAATNHTNHDDV 93

Query: 68  VQNPTSTLQNLYEPHLYISPEPYIFAQFYTFTLESYLLMICCILENRLATPSEIHAATSR 127
           +    +      +P  YISPEP+I  QFYTF  ES+ LMI CILE RLATP+EI AAT R
Sbjct: 94  INKVPN------QPPAYISPEPHISTQFYTFNAESHALMIRCILEQRLATPAEIRAATPR 153

Query: 128 SVLKSWRTVWKDRKRE 134
           +VLKSWR VWKDR  +
Sbjct: 154 AVLKSWRAVWKDRNED 163

[Close]

BLAST of MELO3C015747 vs. TrEMBL
Match: V4VYF5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019247mg PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.0e-24
Identity = 71/136 (52.21%), Postives = 84/136 (61.76%), Query Frame = 1


Query: 8   EFQPSIPNSHHAEPP--------FSLPEIMLFLSPSPSSPSHSSS--DDLPTHSTWLSRL 67
           E QPSI N +H   P         SLPEI+LF + S  SPSHSSS  DD  T+ T    +
Sbjct: 38  ESQPSIHNHNHDHNPNHDDPVSFSSLPEIVLFRTSSEESPSHSSSENDDAATNHTNHDDV 97

Query: 68  VQNPTSTLQNLYEPHLYISPEPYIFAQFYTFTLESYLLMICCILENRLATPSEIHAATSR 127
           +    +      +P  YISPEP+I  QFYTF  ES+ LMI CILE RLATP+EI AAT R
Sbjct: 98  INKVPN------QPPAYISPEPHISTQFYTFNAESHALMIRCILEQRLATPAEIRAATPR 157

Query: 128 SVLKSWRTVWKDRKRE 134
           +VLKSWR VWKDR  +
Sbjct: 158 AVLKSWRAVWKDRNED 167

[Close]

BLAST of MELO3C015747 vs. TrEMBL
Match: A0A087GZI2_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA5G264800 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.1e-23
Identity = 68/136 (50.00%), Postives = 86/136 (63.24%), Query Frame = 1


Query: 6   IIEFQPSIPNSHHA------EPPFSLPEIMLFLS-PSPSSPSHSSSD-DLPTHSTWLSRL 65
           II+ QPSI N H+       +PPFSLPE +LF S PS  SP HSS + D  +H T     
Sbjct: 22  IIQSQPSIHNHHNHHHNPEDDPPFSLPEFVLFRSSPSGDSPDHSSDEHDDVSHETPKFAA 81

Query: 66  VQNPTSTLQNLYEPHLYISPEPYIFAQFYTFTLESYLLMICCILENRLATPSEIHAATSR 125
             NP+      +    +I+PEP+I +QFYTF  +S+ LMI C+ E RLATP+EI  AT R
Sbjct: 82  SSNPS------FSNGAFINPEPHISSQFYTFNADSHSLMIRCLREGRLATPNEIRIATPR 141

Query: 126 SVLKSWRTVWKDRKRE 134
           SVLKSWR+VWKDR  +
Sbjct: 142 SVLKSWRSVWKDRNED 151

[Close]

BLAST of MELO3C015747 vs. TAIR10
Match: AT3G60850.1 (AT3G60850.1 unknown protein)

HSP 1 Score: 109.4 bits (272), Expect = 2.7e-24
Identity = 62/134 (46.27%), Postives = 79/134 (58.96%), Query Frame = 1


Query: 6   IIEFQPSIPNSHH-----AEPPFSLPEIMLFLS-PSPSSPSHSSSDDLPTHSTWLSRLVQ 65
           +++  PSI + HH      +P FSLPE +LF S PS  SP   SSD+     T   ++  
Sbjct: 23  LVQSPPSILHHHHDHNSEVDPAFSLPEFILFRSSPSGDSPG-LSSDEQDDSLTGNPQIAD 82

Query: 66  NPTSTLQNLYEPHLYISPEPYIFAQFYTFTLESYLLMICCILENRLATPSEIHAATSRSV 125
           +  S + +     L+ISP+P+I +QFYTF   S+ LM  C+ E RLATP+EI  AT RSV
Sbjct: 83  SSNSRVSSAGRDGLFISPDPHISSQFYTFNAASHSLMCRCLREGRLATPAEIRIATPRSV 142

Query: 126 LKSWRTVWKDRKRE 134
           LKSWR VWKDR  E
Sbjct: 143 LKSWRAVWKDRNEE 155

[Close]

BLAST of MELO3C015747 vs. NCBI nr
Match: gi|449433123|ref|XP_004134347.1| (PREDICTED: uncharacterized protein LOC101217172 [Cucumis sativus])

HSP 1 Score: 216.9 bits (551), Expect = 3.4e-53
Identity = 108/128 (84.38%), Postives = 114/128 (89.06%), Query Frame = 1


Query: 6   IIEFQPSIPNSHHAEPPFSLPEIMLFLSPSPSSPSHSSSDDLPTHSTWLSRLVQNPTSTL 65
           IIE QPSIPNSHHAEPPFSLPEI+LF SPSPSSPSHSSSDD PTHST LS+LVQNPTST 
Sbjct: 27  IIESQPSIPNSHHAEPPFSLPEIVLFRSPSPSSPSHSSSDDSPTHSTRLSQLVQNPTSTS 86

Query: 66  QNLYEPHLYISPEPYIFAQFYTFTLESYLLMICCILENRLATPSEIHAATSRSVLKSWRT 125
           QNL+EP LYISPEP+I AQFYTF  ES+ LMI CILENRLATPSEI AATSRSVLKSWRT
Sbjct: 87  QNLHEPPLYISPEPHISAQFYTFNPESHSLMIRCILENRLATPSEIRAATSRSVLKSWRT 146

Query: 126 VWKDRKRE 134
           VWKDR  +
Sbjct: 147 VWKDRNED 154

[Close]

BLAST of MELO3C015747 vs. NCBI nr
Match: gi|659075455|ref|XP_008438153.1| (PREDICTED: uncharacterized protein LOC103483347 [Cucumis melo])

HSP 1 Score: 216.9 bits (551), Expect = 3.4e-53
Identity = 108/128 (84.38%), Postives = 114/128 (89.06%), Query Frame = 1


Query: 6   IIEFQPSIPNSHHAEPPFSLPEIMLFLSPSPSSPSHSSSDDLPTHSTWLSRLVQNPTSTL 65
           IIE QPSIPNSHHAEPPFSLPEI+LF SPSPSSPSHSSSDD PTHST LS+LVQNPTST 
Sbjct: 27  IIESQPSIPNSHHAEPPFSLPEIVLFRSPSPSSPSHSSSDDSPTHSTRLSQLVQNPTSTS 86

Query: 66  QNLYEPHLYISPEPYIFAQFYTFTLESYLLMICCILENRLATPSEIHAATSRSVLKSWRT 125
           QNL+EP LYISPEP+I AQFYTF  ES+ LMI CILENRLATPSEI AATSRSVLKSWRT
Sbjct: 87  QNLHEPPLYISPEPHISAQFYTFNPESHSLMIRCILENRLATPSEIRAATSRSVLKSWRT 146

Query: 126 VWKDRKRE 134
           VWKDR  +
Sbjct: 147 VWKDRNED 154

[Close]

BLAST of MELO3C015747 vs. NCBI nr
Match: gi|1009168725|ref|XP_015902815.1| (PREDICTED: uncharacterized protein LOC107435700 [Ziziphus jujuba])

HSP 1 Score: 131.3 bits (329), Expect = 1.9e-27
Identity = 74/129 (57.36%), Postives = 92/129 (71.32%), Query Frame = 1


Query: 10  QPSIPNSHHAEPPFSLPEIMLFLSPSPSS-PSHSSSD--DLPTHSTWLSRLVQNPTSTLQ 69
           QPSIPN    +PPFSLPEI++F S S SS PSHSSS+  D+ TH     +   NP S++ 
Sbjct: 43  QPSIPNPED-DPPFSLPEIVIFRSSSSSSSPSHSSSENEDVSTHHQHQHQH-PNPNSSIS 102

Query: 70  NLYEPH--LYISPEPYIFAQFYTFTLESYLLMICCILENRLATPSEIHAATSRSVLKSWR 129
               PH  LYISP+P+I +QFYTF  +S+ LMI C+LE+RLATP+EI AAT R+VLKSWR
Sbjct: 103 PKTPPHPPLYISPDPHISSQFYTFNPDSHALMIRCLLEHRLATPAEIRAATPRAVLKSWR 162

Query: 130 TVWKDRKRE 134
            VWKDR  +
Sbjct: 163 AVWKDRNED 169

[Close]

BLAST of MELO3C015747 vs. NCBI nr
Match: gi|703085816|ref|XP_010092841.1| (hypothetical protein L484_022436 [Morus notabilis])

HSP 1 Score: 126.7 bits (317), Expect = 4.6e-26
Identity = 73/132 (55.30%), Postives = 87/132 (65.91%), Query Frame = 1


Query: 10  QPSIPNSHHAEPPFSLPEIMLFLSPSPSS---PSHSSSDDLPTHSTWLSRLVQN--PTST 69
           QPSIPN H  +PPFSLPEI++F S S SS   PS   +DD+ TH         +  PT  
Sbjct: 48  QPSIPNPHD-DPPFSLPEIVIFRSSSSSSSPSPSDDENDDVSTHLPPNPNPNSSILPTMN 107

Query: 70  LQNLYEPH---LYISPEPYIFAQFYTFTLESYLLMICCILENRLATPSEIHAATSRSVLK 129
            QN   P+   L+ISPEP+I +QFYTF  ES+ LMI C+LE RLATP EI AAT R+VLK
Sbjct: 108 NQNQNNPNSQPLFISPEPHISSQFYTFNPESHSLMIRCLLERRLATPPEIRAATPRAVLK 167

Query: 130 SWRTVWKDRKRE 134
           SWR VWKDR  +
Sbjct: 168 SWRAVWKDRNED 178

[Close]

BLAST of MELO3C015747 vs. NCBI nr
Match: gi|641867165|gb|KDO85849.1| (hypothetical protein CISIN_1g006579mg [Citrus sinensis])

HSP 1 Score: 121.7 bits (304), Expect = 1.5e-24
Identity = 71/136 (52.21%), Postives = 84/136 (61.76%), Query Frame = 1


Query: 8   EFQPSIPNSHHAEPP--------FSLPEIMLFLSPSPSSPSHSSS--DDLPTHSTWLSRL 67
           E QPSI N +H   P         SLPEI+LF + S  SPSHSSS  DD  T+ T    +
Sbjct: 34  ESQPSIHNHNHDHNPNHDDPVSFSSLPEIVLFRTSSEESPSHSSSENDDAATNHTNHDDV 93

Query: 68  VQNPTSTLQNLYEPHLYISPEPYIFAQFYTFTLESYLLMICCILENRLATPSEIHAATSR 127
           +    +      +P  YISPEP+I  QFYTF  ES+ LMI CILE RLATP+EI AAT R
Sbjct: 94  INKVPN------QPPAYISPEPHISTQFYTFNAESHALMIRCILEQRLATPAEIRAATPR 153

Query: 128 SVLKSWRTVWKDRKRE 134
           +VLKSWR VWKDR  +
Sbjct: 154 AVLKSWRAVWKDRNED 163

The following BLAST results are available for this feature:

BLAST of MELO3C015747 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3S8_CUCSA	2.4e-53	84.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G126100 PE=4 SV=1	[more]
W9RE78_9ROSA	3.2e-26	55.30	Uncharacterized protein OS=Morus notabilis GN=L484_022436 PE=4 SV=1	[more]
A0A067H1W8_CITSI	1.0e-24	52.21	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g006579mg PE=4 SV=1	[more]
V4VYF5_9ROSI	1.0e-24	52.21	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019247mg PE=4 SV=1	[more]
A0A087GZI2_ARAAL	1.1e-23	50.00	Uncharacterized protein OS=Arabis alpina GN=AALP_AA5G264800 PE=4 SV=1	[more]

BLAST of MELO3C015747 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G60850.1	2.7e-24	46.27	unknown protein	[more]

BLAST of MELO3C015747 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449433123\|ref\|XP_004134347.1\|	3.4e-53	84.38	PREDICTED: uncharacterized protein LOC101217172 [Cucumis sativus]	[more]
gi\|659075455\|ref\|XP_008438153.1\|	3.4e-53	84.38	PREDICTED: uncharacterized protein LOC103483347 [Cucumis melo]	[more]
gi\|1009168725\|ref\|XP_015902815.1\|	1.9e-27	57.36	PREDICTED: uncharacterized protein LOC107435700 [Ziziphus jujuba]	[more]
gi\|703085816\|ref\|XP_010092841.1\|	4.6e-26	55.30	hypothetical protein L484_022436 [Morus notabilis]	[more]
gi\|641867165\|gb\|KDO85849.1\|	1.5e-24	52.21	hypothetical protein CISIN_1g006579mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU66121	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C015747T1	MELO3C015747T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU66121	MU66121	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37745	FAMILY NOT NAMED	coord: 5..133 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C015747	Silver-seed gourd	carmeB0961
MELO3C015747	Cucumber (Chinese Long) v3	cucmeB538
MELO3C015747	Watermelon (97103) v2	mewmbB229
MELO3C015747	Wax gourd	mewgoB250
MELO3C015747	Wax gourd	mewgoB259
MELO3C015747	Cucumber (Gy14) v1	cgymeB636
MELO3C015747	Cucurbita maxima (Rimu)	cmameB825
MELO3C015747	Cucurbita moschata (Rifu)	cmomeB809
MELO3C015747	Wild cucumber (PI 183967)	cpimeB526
MELO3C015747	Cucumber (Chinese Long) v2	cumeB522
MELO3C015747	Watermelon (Charleston Gray)	mewcgB182
MELO3C015747	Watermelon (97103) v1	mewmB205
MELO3C015747	Cucurbita pepo (Zucchini)	cpemeB300
MELO3C015747	Bottle gourd (USVL1VR-Ls)	lsimeB186
MELO3C015747	Cucumber (Gy14) v2	cgybmeB458