MELO3C015743 (gene) Melon (DHL92) v3.5.1

NameMELO3C015743
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionGlycine--tRNA ligase beta subunit
Locationchr1 : 27895341 .. 27895703 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACATGGTTAACCTCAATGAAGCTAAGATCAAGGTCAAATACAACTACTATGGCTTTATTCCAACTGCCATTAGAATTAAAGACAAAGACGATCATTTTTTTCGTAGTACTCATACAGTAACTATCTGTTCAGGAAAATGGTTAGCAAAACGCGATGTGAAAATTCATGGACCCTTCAAGAGGCAAGCCGCCATTGATTTCGACGATTTCAACCCAATTAAAGCAGAACAATTCATTTTCGTAGGAGACTTGGCAATTCCGACCGGTGAATTTGAAAAGTTGAAAAACAGAGCATTAATGGCAGAGTTGACAAAAGAAGAAGATCCCACATTAGCCAAGGATATTTATGAAAGGGATTAA

mRNA sequence

ATGGACATGGTTAACCTCAATGAAGCTAAGATCAAGGTCAAATACAACTACTATGGCTTTATTCCAACTGCCATTAGAATTAAAGACAAAGACGATCATTTTTTTCGTAGTACTCATACAGTAACTATCTGTTCAGGAAAATGGTTAGCAAAACGCGATGTGAAAATTCATGGACCCTTCAAGAGGCAAGCCGCCATTGATTTCGACGATTTCAACCCAATTAAAGCAGAACAATTCATTTTCGTAGGAGACTTGGCAATTCCGACCGGTGAATTTGAAAAGTTGAAAAACAGAGCATTAATGGCAGAGTTGACAAAAGAAGAAGATCCCACATTAGCCAAGGATATTTATGAAAGGGATTAA

Coding sequence (CDS)

ATGGACATGGTTAACCTCAATGAAGCTAAGATCAAGGTCAAATACAACTACTATGGCTTTATTCCAACTGCCATTAGAATTAAAGACAAAGACGATCATTTTTTTCGTAGTACTCATACAGTAACTATCTGTTCAGGAAAATGGTTAGCAAAACGCGATGTGAAAATTCATGGACCCTTCAAGAGGCAAGCCGCCATTGATTTCGACGATTTCAACCCAATTAAAGCAGAACAATTCATTTTCGTAGGAGACTTGGCAATTCCGACCGGTGAATTTGAAAAGTTGAAAAACAGAGCATTAATGGCAGAGTTGACAAAAGAAGAAGATCCCACATTAGCCAAGGATATTTATGAAAGGGATTAA

Protein sequence

MDMVNLNEAKIKVKYNYYGFIPTAIRIKDKDDHFFRSTHTVTICSGKWLAKRDVKIHGPFKRQAAIDFDDFNPIKAEQFIFVGDLAIPTGEFEKLKNRALMAELTKEEDPTLAKDIYERD*
BLAST of MELO3C015743 vs. TrEMBL
Match: E5GB30_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.8e-09
Identity = 37/86 (43.02%), Postives = 54/86 (62.79%), Query Frame = 1

Query: 2   DMVNLNEAKIKVKYNYYGFIPTAIRIKDKDDHFFRSTHTVTICSGKWLAKRDVKIHGPFK 61
           ++ +L EA I+VK NY GFIP  I++ DK++  +     +    GKW   R+  IHG F 
Sbjct: 252 ELTDLIEASIRVKDNYSGFIPAFIKLIDKEERSY-IIQVIVKTEGKWHLGRNPSIHGTFT 311

Query: 62  RQAAIDFDDFNPIKAEQFIFVGDLAI 88
           R+AA  FD+FN + +EQ+ F G+LAI
Sbjct: 312 REAARRFDEFN-LNSEQYFFEGNLAI 335

BLAST of MELO3C015743 vs. TrEMBL
Match: A0A0A0LH82_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G055060 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.7e-06
Identity = 34/85 (40.00%), Postives = 46/85 (54.12%), Query Frame = 1

Query: 20  FIPTAIRIKDKDDHFFRSTHTVTICSGKWLAKRDVKIHGPFKRQAAIDFDDFNPIKAEQF 79
           F+P  IRI D   + F     V+   GKWL +R+V+ HG FK QA   F +FNP  A+QF
Sbjct: 8   FVPAYIRITDDLGNSF-PIQIVSHTQGKWLVERNVRKHGIFKSQATTSFGEFNP-NAKQF 67

Query: 80  IFVGDLAIPTGEFEKLKNRALMAEL 105
            F+G   +P       KN+ L  E+
Sbjct: 68  TFIGSEGLPPKHPTSSKNKVLNDEI 90

BLAST of MELO3C015743 vs. NCBI nr
Match: gi|659071590|ref|XP_008460776.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis melo])

HSP 1 Score: 87.8 bits (216), Expect = 1.4e-14
Identity = 46/83 (55.42%), Postives = 59/83 (71.08%), Query Frame = 1

Query: 5   NLNEAKIKVKYNYYGFIPTAIRIKDKDDHFFRSTHTVTICSGKWLAKRDVKIHGPFKRQA 64
           NL EAKIK++YNY GF+P  +RI D + + F S   VT   GKWL +R+V++HG FKRQA
Sbjct: 328 NLIEAKIKIRYNYSGFLPANVRIFDNEGNKF-SIQVVTHPEGKWLIERNVRLHGTFKRQA 387

Query: 65  AIDFDDFNPIKAEQFIFVGDLAI 88
           A  FD+FNP ++EQF F G  AI
Sbjct: 388 AAAFDEFNP-ESEQFFFEGMEAI 408

BLAST of MELO3C015743 vs. NCBI nr
Match: gi|307135793|gb|ADN33672.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 69.7 bits (169), Expect = 4.0e-09
Identity = 37/86 (43.02%), Postives = 54/86 (62.79%), Query Frame = 1

Query: 2   DMVNLNEAKIKVKYNYYGFIPTAIRIKDKDDHFFRSTHTVTICSGKWLAKRDVKIHGPFK 61
           ++ +L EA I+VK NY GFIP  I++ DK++  +     +    GKW   R+  IHG F 
Sbjct: 252 ELTDLIEASIRVKDNYSGFIPAFIKLIDKEERSY-IIQVIVKTEGKWHLGRNPSIHGTFT 311

Query: 62  RQAAIDFDDFNPIKAEQFIFVGDLAI 88
           R+AA  FD+FN + +EQ+ F G+LAI
Sbjct: 312 REAARRFDEFN-LNSEQYFFEGNLAI 335

BLAST of MELO3C015743 vs. NCBI nr
Match: gi|700205999|gb|KGN61118.1| (hypothetical protein Csa_2G055060 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 5.3e-06
Identity = 34/85 (40.00%), Postives = 46/85 (54.12%), Query Frame = 1

Query: 20  FIPTAIRIKDKDDHFFRSTHTVTICSGKWLAKRDVKIHGPFKRQAAIDFDDFNPIKAEQF 79
           F+P  IRI D   + F     V+   GKWL +R+V+ HG FK QA   F +FNP  A+QF
Sbjct: 8   FVPAYIRITDDLGNSF-PIQIVSHTQGKWLVERNVRKHGIFKSQATTSFGEFNP-NAKQF 67

Query: 80  IFVGDLAIPTGEFEKLKNRALMAEL 105
            F+G   +P       KN+ L  E+
Sbjct: 68  TFIGSEGLPPKHPTSSKNKVLNDEI 90

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E5GB30_CUCME2.8e-0943.02Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0LH82_CUCSA3.7e-0640.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G055060 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659071590|ref|XP_008460776.1|1.4e-1455.42PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis me... [more]
gi|307135793|gb|ADN33672.1|4.0e-0943.02hypothetical protein [Cucumis melo subsp. melo][more]
gi|700205999|gb|KGN61118.1|5.3e-0640.00hypothetical protein Csa_2G055060 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C015743T1MELO3C015743T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None