MELO3C015639 (gene) Melon (DHL92) v3.5.1

NameMELO3C015639
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionUvrABC system protein B
Locationchr2 : 3793192 .. 3793389 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAGCAAGCCAATGATCAGGTTCAAGCAGTTCGTCAAGACGTTAAAGGATTGAAAGCTCAATTGGCAAAGATCTTGGAACTACTCACTATTGGAAGAGGAAAGAGTGTTGCAGGGACTTCATCACAGGTGGAAGTACATCTGAACCAGGTACTAGAGGACATGCCTGCATACCCTCTGAGTTTTACTCCTTAA

mRNA sequence

ATGGATGAGCAAGCCAATGATCAGGTTCAAGCAGTTCGTCAAGACGTTAAAGGATTGAAAGCTCAATTGGCAAAGATCTTGGAACTACTCACTATTGGAAGAGGAAAGAGTGTTGCAGGGACTTCATCACAGGTGGAAGTACATCTGAACCAGGTACTAGAGGACATGCCTGCATACCCTCTGAGTTTTACTCCTTAA

Coding sequence (CDS)

ATGGATGAGCAAGCCAATGATCAGGTTCAAGCAGTTCGTCAAGACGTTAAAGGATTGAAAGCTCAATTGGCAAAGATCTTGGAACTACTCACTATTGGAAGAGGAAAGAGTGTTGCAGGGACTTCATCACAGGTGGAAGTACATCTGAACCAGGTACTAGAGGACATGCCTGCATACCCTCTGAGTTTTACTCCTTAA

Protein sequence

MDEQANDQVQAVRQDVKGLKAQLAKILELLTIGRGKSVAGTSSQVEVHLNQVLEDMPAYPLSFTP*
BLAST of MELO3C015639 vs. NCBI nr
Match: gi|659093710|ref|XP_008447676.1| (PREDICTED: uncharacterized protein LOC103490085 [Cucumis melo])

HSP 1 Score: 110.9 bits (276), Expect = 8.4e-22
Identity = 57/65 (87.69%), Postives = 58/65 (89.23%), Query Frame = 1

Query: 1  MDEQANDQVQAVRQDVKGLKAQLAKILELLTIGRGKSVAGTSSQVEVHLNQVLEDMPAYP 60
          MDEQ NDQVQAVRQDV+GLK QLAKILELLTIGRGKSV G SSQVEV LNQVLEDMPAYP
Sbjct: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTIGRGKSVTGISSQVEVDLNQVLEDMPAYP 60

Query: 61 LSFTP 66
            FTP
Sbjct: 61 PGFTP 65

BLAST of MELO3C015639 vs. NCBI nr
Match: gi|659102853|ref|XP_008452348.1| (PREDICTED: uncharacterized protein LOC103493407 [Cucumis melo])

HSP 1 Score: 109.0 bits (271), Expect = 3.2e-21
Identity = 57/65 (87.69%), Postives = 59/65 (90.77%), Query Frame = 1

Query: 1  MDEQANDQVQAVRQDVKGLKAQLAKILELLTIGRGKSVAGTSSQVEVHLNQVLEDMPAYP 60
          MDEQ NDQVQAVRQDV+GLK QLAKILELLT GRGKSVAGTSSQVEV LNQVLED+ AYP
Sbjct: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLEDILAYP 60

Query: 61 LSFTP 66
           SFTP
Sbjct: 61 PSFTP 65

BLAST of MELO3C015639 vs. NCBI nr
Match: gi|659130442|ref|XP_008465174.1| (PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo])

HSP 1 Score: 107.8 bits (268), Expect = 7.1e-21
Identity = 55/65 (84.62%), Postives = 57/65 (87.69%), Query Frame = 1

Query: 1  MDEQANDQVQAVRQDVKGLKAQLAKILELLTIGRGKSVAGTSSQVEVHLNQVLEDMPAYP 60
          MDEQ NDQVQAVRQDV+GLK QLAKILEL T GR KSVAG SSQVEV LNQVLEDMPAYP
Sbjct: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELFTTGRRKSVAGISSQVEVDLNQVLEDMPAYP 60

Query: 61 LSFTP 66
          + FTP
Sbjct: 61 IGFTP 65

BLAST of MELO3C015639 vs. NCBI nr
Match: gi|659114599|ref|XP_008457136.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496882 [Cucumis melo])

HSP 1 Score: 106.3 bits (264), Expect = 2.1e-20
Identity = 55/65 (84.62%), Postives = 57/65 (87.69%), Query Frame = 1

Query: 1  MDEQANDQVQAVRQDVKGLKAQLAKILELLTIGRGKSVAGTSSQVEVHLNQVLEDMPAYP 60
          MDEQ+NDQVQAVRQDV+GLK QLAKILELLT GRGKSVAG SSQVEV LNQVLEDM  YP
Sbjct: 1  MDEQSNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGISSQVEVDLNQVLEDMTTYP 60

Query: 61 LSFTP 66
            FTP
Sbjct: 61 PGFTP 65

BLAST of MELO3C015639 vs. NCBI nr
Match: gi|659122237|ref|XP_008461036.1| (PREDICTED: uncharacterized protein LOC103499741 [Cucumis melo])

HSP 1 Score: 98.2 bits (243), Expect = 5.7e-18
Identity = 52/65 (80.00%), Postives = 55/65 (84.62%), Query Frame = 1

Query: 1  MDEQANDQVQAVRQDVKGLKAQLAKILELLTIGRGKSVAGTSSQVEVHLNQVLEDMPAYP 60
          MDEQ NDQVQAV QDV+GL+ QL KILELLT GRGK+VAGTSSQVEV LNQVLEDM AY 
Sbjct: 1  MDEQTNDQVQAVCQDVEGLEDQLKKILELLTTGRGKNVAGTSSQVEVDLNQVLEDMSAYL 60

Query: 61 LSFTP 66
            FTP
Sbjct: 61 PGFTP 65

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|659093710|ref|XP_008447676.1|8.4e-2287.69PREDICTED: uncharacterized protein LOC103490085 [Cucumis melo][more]
gi|659102853|ref|XP_008452348.1|3.2e-2187.69PREDICTED: uncharacterized protein LOC103493407 [Cucumis melo][more]
gi|659130442|ref|XP_008465174.1|7.1e-2184.62PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo][more]
gi|659114599|ref|XP_008457136.1|2.1e-2084.62PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496882 [Cucumis me... [more]
gi|659122237|ref|XP_008461036.1|5.7e-1880.00PREDICTED: uncharacterized protein LOC103499741 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C015639T1MELO3C015639T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 2..29
scor

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None