MELO3C015356 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C015356
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionExtracellular matrix-binding protein EbhB
Locationchr2 : 998874 .. 999846 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCATCAACTGTATAACATCGTGCGGTAGTGCTGACTCTGACAGAGCAGTAAGAAATTTCAGCCCTCAACGTCAACCTAAATCCCATAAGGTTCGAGACCATATCAAAGCTTCACAAAATGTCCAGTCGAAGAAGGAAACTCAGCTCCAATTAGTATCATCCCTCAGCAAGGTGAGAGTACAGAACAAAAGGCTAAACATAGGAAAATTTCATATCTAATTTTATTATGAAAAGCAACTTGAATGACTTTAATTCTGCCACGTTTACATCAAGCGTCGTTCAATTTTCAGGTTAAAGCAGTTCCAGAACGAATTGAAGTTGTCAAACCAGCTGCATCTTCAAATAAAGATACTGCTGAAGACAAGCTAAGTGAAGTTGAGAATGGTGCAGCCAACCGGCCAAAGCCAACTGGCCAAGGGTCTCGAGGGTCAAGGATAATGTTCCTCAAGTATCCTGACTATAAAATGCATTCACCACAAATCAAGTCTCGCCTTGTATTTGGCCAGAGCATGTGTAGGCTTCATTTTGTTCGTGAAGGTCGCAAGACAAGTGCTACTGTATGGAAATTGAGGATAAATGGTGCAGGTAATTATACTCATACTAACAAGTTACCCATGTTTTCTTGTACAAAGATGGAGTTTTGATGGTTGAGGCTGATTGAAAATGTTAGAAGACGCCTGCCCTTCGTTAAAGTGGTACGTAGTTCCCCCTGTGTGTTTCTGTGTTTGTGGTGGATTGCTTCTTATTGCAATCTTAGAATTTAAATAAGGTTTGATTTAGGTAGATGTTGTAAACTAAGTCGTTTAGATTTAGGTAGATGTTGTAAACCAAGTTGTATAGGTTTTGTTGTATCTCTGCTTTTGATGTAGCCCCAACGAGTAATCCTCCACGAACCAAAATTGTAAATCTTTTGTTAACAAAATAATAGTGTGTTTCATACAAGGGAATTTTATTAAACCATTCTACAATA

mRNA sequence

ATGTCCATCAACTGTATAACATCGTGCGGTAGTGCTGACTCTGACAGAGCAGTAAGAAATTTCAGCCCTCAACGTCAACCTAAATCCCATAAGGTTCGAGACCATATCAAAGCTTCACAAAATGTCCAGTCGAAGAAGGAAACTCAGCTCCAATTAGTATCATCCCTCAGCAAGGTTAAAGCAGTTCCAGAACGAATTGAAGTTGTCAAACCAGCTGCATCTTCAAATAAAGATACTGCTGAAGACAAGCTAAGTGAAGTTGAGAATGGTGCAGCCAACCGGCCAAAGCCAACTGGCCAAGGGTCTCGAGGGTCAAGGATAATGTTCCTCAAGTATCCTGACTATAAAATGCATTCACCACAAATCAAGTCTCGCCTTGTATTTGGCCAGAGCATGTGTAGGCTTCATTTTGTTCGTGAAGGTCGCAAGACAAGTGCTACTGTATGGAAATTGAGGATAAATGGTGCAGGTAATTATACTCATACTAACAAGTTACCCATGTTTTCTTGTACAAAGATGGAGTTTTGATGGTTGAGGCTGATTGAAAATGTTAGAAGACGCCTGCCCTTCGTTAAAGTGGTACGTAGTTCCCCCTGTGTGTTTCTGTGTTTGTGGTGGATTGCTTCTTATTGCAATCTTAGAATTTAAATAAGGTTTGATTTAGGTAGATGTTGTAAACTAAGTCGTTTAGATTTAGGTAGATGTTGTAAACCAAGTTGTATAGGTTTTGTTGTATCTCTGCTTTTGATGTAGCCCCAACGAGTAATCCTCCACGAACCAAAATTGTAAATCTTTTGTTAACAAAATAATAGTGTGTTTCATACAAGGGAATTTTATTAAACCATTCTACAATA

Coding sequence (CDS)

ATGTCCATCAACTGTATAACATCGTGCGGTAGTGCTGACTCTGACAGAGCAGTAAGAAATTTCAGCCCTCAACGTCAACCTAAATCCCATAAGGTTCGAGACCATATCAAAGCTTCACAAAATGTCCAGTCGAAGAAGGAAACTCAGCTCCAATTAGTATCATCCCTCAGCAAGGTTAAAGCAGTTCCAGAACGAATTGAAGTTGTCAAACCAGCTGCATCTTCAAATAAAGATACTGCTGAAGACAAGCTAAGTGAAGTTGAGAATGGTGCAGCCAACCGGCCAAAGCCAACTGGCCAAGGGTCTCGAGGGTCAAGGATAATGTTCCTCAAGTATCCTGACTATAAAATGCATTCACCACAAATCAAGTCTCGCCTTGTATTTGGCCAGAGCATGTGTAGGCTTCATTTTGTTCGTGAAGGTCGCAAGACAAGTGCTACTGTATGGAAATTGAGGATAAATGGTGCAGGTAATTATACTCATACTAACAAGTTACCCATGTTTTCTTGTACAAAGATGGAGTTTTGA

Protein sequence

MSINCITSCGSADSDRAVRNFSPQRQPKSHKVRDHIKASQNVQSKKETQLQLVSSLSKVKAVPERIEVVKPAASSNKDTAEDKLSEVENGAANRPKPTGQGSRGSRIMFLKYPDYKMHSPQIKSRLVFGQSMCRLHFVREGRKTSATVWKLRINGAGNYTHTNKLPMFSCTKMEF*
Homology
[Close]
BLAST of MELO3C015356 vs. TrEMBL
Match: A0A0A0LW42_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G572360 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.5e-19
Identity = 58/92 (63.04%), Postives = 66/92 (71.74%), Query Frame = 1 

Query: 5   CITSCGSADSDRAVRNFSPQRQPKSHKVRDHIKASQNVQSKKETQLQLVSSLSKVKAVPE 64
           CI SCG+ D DRAVRNFS QRQPKSHKV DHIKASQNVQSKKETQLQ+VSSL K +++  
Sbjct: 51  CIKSCGNDDFDRAVRNFSSQRQPKSHKVLDHIKASQNVQSKKETQLQVVSSLGKRRSIFR 110

Query: 65  RIEVVKPAASSNKDTAEDK-LSEVENGAANRP 96
             +       SN+   + K LSEVEN  AN P
Sbjct: 111 LKQFQNELKLSNQLQLQIKILSEVENSVANWP 142

[Close]
BLAST of MELO3C015356 vs. TrEMBL
Match: A0A0A0LW42_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G572360 PE=4 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 1.4e-01
Identity = 19/34 (55.88%), Postives = 28/34 (82.35%), Query Frame = 1 

Query: 11 SADSDRAVRNFSPQRQPKSHKVRDHIKASQNVQS 45
          S DSD+ +RNF P+R+ K HK RDH+++SQ+V+S
Sbjct: 5  SDDSDKQLRNFRPRRKLKYHKERDHVESSQSVRS 38


HSP 2 Score: 98.2 bits (243), Expect = 1.1e-17
Identity = 53/92 (57.61%), Postives = 65/92 (70.65%), Query Frame = 1 

Query: 11  SADSDRAVRNFSPQRQPKSHKVRDHIKASQNVQSKKETQLQLVSSLSKVKAVPERIEVVK 70
           S DSDR   NFS Q QPKSHKV DH+   QNVQSK+ETQLQ+V  LSK +AVP++I++V+
Sbjct: 345 SDDSDRGTGNFSSQHQPKSHKVLDHVDTLQNVQSKRETQLQVVPRLSKAEAVPKQIKIVR 404

Query: 71  PAASSNKDTAEDKLSEVENGAANRPKPTGQGS 103
           PAA+SN+D      S+VEN    R K  G GS
Sbjct: 405 PAATSNEDIFVYHQSKVEN---RRLKSIGHGS 433

[Close]
BLAST of MELO3C015356 vs. NCBI nr
Match: gi|659099645|ref|XP_008450705.1| (PREDICTED: uncharacterized protein LOC103492204 isoform X2 [Cucumis melo])

HSP 1 Score: 353.6 bits (906), Expect = 2.0e-94
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 1 

Query: 1   MSINCITSCGSADSDRAVRNFSPQRQPKSHKVRDHIKASQNVQSKKETQLQLVSSLSKVK 60
           MSINCITSCGSADSDRAVRNFSPQRQPKSHKVRDHIKASQNVQSKKETQLQLVSSLSKVK
Sbjct: 540 MSINCITSCGSADSDRAVRNFSPQRQPKSHKVRDHIKASQNVQSKKETQLQLVSSLSKVK 599

Query: 61  AVPERIEVVKPAASSNKDTAEDKLSEVENGAANRPKPTGQGSRGSRIMFLKYPDYKMHSP 120
           AVPERIEVVKPAASSNKDTAEDKLSEVENGAANRPKPTGQGSRGSRIMFLKYPDYKMHSP
Sbjct: 600 AVPERIEVVKPAASSNKDTAEDKLSEVENGAANRPKPTGQGSRGSRIMFLKYPDYKMHSP 659

Query: 121 QIKSRLVFGQSMCRLHFVREGRKTSATVWKLRINGAGNYTHTNKLPMFSCTKMEF 176
           QIKSRLVFGQSMCRLHFVREGRKTSATVWKLRINGAGNYTHTNKLPMFSCTKMEF
Sbjct: 660 QIKSRLVFGQSMCRLHFVREGRKTSATVWKLRINGAGNYTHTNKLPMFSCTKMEF 714

[Close]
BLAST of MELO3C015356 vs. NCBI nr
Match: gi|659099645|ref|XP_008450705.1| (PREDICTED: uncharacterized protein LOC103492204 isoform X2 [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 1.7e-08
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 1 

Query: 1   MSINCITSCGSADSDRAVRNFSPQRQP-KSHKVRDHIKASQNVQS 45
           MSINC+T C S DSDRA RNFS QRQP KSHKV DH+++SQNVQS
Sbjct: 483 MSINCLTLCRSDDSDRAGRNFSSQRQPTKSHKVLDHVESSQNVQS 527


HSP 2 Score: 62.4 bits (150), Expect = 9.2e-07
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 1 

Query: 1   MSINCITSCGSADSDRAVRNFSPQRQPKSHKVRDHIKASQNVQS 45
           MSINC+T C S DSDR  RNFS QRQPK HK  DH+++SQ+++S
Sbjct: 427 MSINCLTLCHSDDSDREGRNFSSQRQPKPHKDLDHVESSQSIRS 470


HSP 3 Score: 35.8 bits (81), Expect = 9.2e+01
Identity = 22/61 (36.07%), Postives = 34/61 (55.74%), Query Frame = 1 

Query: 6   ITSCGSADSDRAVRNFSPQRQPKSHKVRDHIKAS----QNVQSKKETQLQLVSSLSKVKA 63
           I SC   DSD+ +RNFS +RQ K HK    ++      Q+V+ +   +LQ V  L  V++
Sbjct: 356 INSCHRDDSDKELRNFSSRRQLKYHKELQSVELQSVELQSVELQSGVELQSV-ELQSVRS 415


HSP 4 Score: 351.3 bits (900), Expect = 9.9e-94
Identity = 174/175 (99.43%), Postives = 174/175 (99.43%), Query Frame = 1 

Query: 1   MSINCITSCGSADSDRAVRNFSPQRQPKSHKVRDHIKASQNVQSKKETQLQLVSSLSKVK 60
           M INCITSCGSADSDRAVRNFSPQRQPKSHKVRDHIKASQNVQSKKETQLQLVSSLSKVK
Sbjct: 540 MYINCITSCGSADSDRAVRNFSPQRQPKSHKVRDHIKASQNVQSKKETQLQLVSSLSKVK 599

Query: 61  AVPERIEVVKPAASSNKDTAEDKLSEVENGAANRPKPTGQGSRGSRIMFLKYPDYKMHSP 120
           AVPERIEVVKPAASSNKDTAEDKLSEVENGAANRPKPTGQGSRGSRIMFLKYPDYKMHSP
Sbjct: 600 AVPERIEVVKPAASSNKDTAEDKLSEVENGAANRPKPTGQGSRGSRIMFLKYPDYKMHSP 659

Query: 121 QIKSRLVFGQSMCRLHFVREGRKTSATVWKLRINGAGNYTHTNKLPMFSCTKMEF 176
           QIKSRLVFGQSMCRLHFVREGRKTSATVWKLRINGAGNYTHTNKLPMFSCTKMEF
Sbjct: 660 QIKSRLVFGQSMCRLHFVREGRKTSATVWKLRINGAGNYTHTNKLPMFSCTKMEF 714

[Close]
BLAST of MELO3C015356 vs. NCBI nr
Match: gi|659099643|ref|XP_008450704.1| (PREDICTED: uncharacterized protein LOC103492204 isoform X1 [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 1.7e-08
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 1 

Query: 1   MSINCITSCGSADSDRAVRNFSPQRQP-KSHKVRDHIKASQNVQS 45
           MSINC+T C S DSDRA RNFS QRQP KSHKV DH+++SQNVQS
Sbjct: 483 MSINCLTLCRSDDSDRAGRNFSSQRQPTKSHKVLDHVESSQNVQS 527


HSP 2 Score: 62.4 bits (150), Expect = 9.2e-07
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 1 

Query: 1   MSINCITSCGSADSDRAVRNFSPQRQPKSHKVRDHIKASQNVQS 45
           MSINC+T C S DSDR  RNFS QRQPK HK  DH+++SQ+++S
Sbjct: 427 MSINCLTLCHSDDSDREGRNFSSQRQPKPHKDLDHVESSQSIRS 470


HSP 3 Score: 35.8 bits (81), Expect = 9.2e+01
Identity = 22/61 (36.07%), Postives = 34/61 (55.74%), Query Frame = 1 

Query: 6   ITSCGSADSDRAVRNFSPQRQPKSHKVRDHIKAS----QNVQSKKETQLQLVSSLSKVKA 63
           I SC   DSD+ +RNFS +RQ K HK    ++      Q+V+ +   +LQ V  L  V++
Sbjct: 356 INSCHRDDSDKELRNFSSRRQLKYHKELQSVELQSVELQSVELQSGVELQSV-ELQSVRS 415


HSP 4 Score: 116.7 bits (291), Expect = 4.1e-23
Identity = 66/125 (52.80%), Postives = 81/125 (64.80%), Query Frame = 1 

Query: 11  SADSDRAVRNFSPQRQPKSHKVRDHIKASQNVQSKKETQLQLVSSLSKVKAVPERIEVVK 70
           S DSDR  RNFS Q QPKSHK  DH+   QNVQSK+ETQ+Q+VSSLSK +AVP+RI++V+
Sbjct: 345 SDDSDRGTRNFSSQHQPKSHKALDHVDTPQNVQSKRETQIQVVSSLSKAEAVPKRIKIVR 404

Query: 71  PAASSNKDTAEDKLSEVENGAANRPKPTGQGSR------GSRIMFLKYPDYKMHSPQIKS 130
           PAA+SNKD   D+ SEVEN    R K TG GS        S I+  K  D+K+      +
Sbjct: 405 PAATSNKDIVVDQQSEVEN---RRLKSTGHGSLKSGGRCSSSILTTKCIDHKLSPASYFA 464

[Close]
BLAST of MELO3C015356 vs. NCBI nr
Match: gi|700211019|gb|KGN66115.1| (hypothetical protein Csa_1G572360 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 3.6e-19
Identity = 58/92 (63.04%), Postives = 66/92 (71.74%), Query Frame = 1 

Query: 5   CITSCGSADSDRAVRNFSPQRQPKSHKVRDHIKASQNVQSKKETQLQLVSSLSKVKAVPE 64
           CI SCG+ D DRAVRNFS QRQPKSHKV DHIKASQNVQSKKETQLQ+VSSL K +++  
Sbjct: 51  CIKSCGNDDFDRAVRNFSSQRQPKSHKVLDHIKASQNVQSKKETQLQVVSSLGKRRSIFR 110

Query: 65  RIEVVKPAASSNKDTAEDK-LSEVENGAANRP 96
             +       SN+   + K LSEVEN  AN P
Sbjct: 111 LKQFQNELKLSNQLQLQIKILSEVENSVANWP 142

[Close]
BLAST of MELO3C015356 vs. NCBI nr
Match: gi|700211019|gb|KGN66115.1| (hypothetical protein Csa_1G572360 [Cucumis sativus])

HSP 1 Score: 44.7 bits (104), Expect = 2.0e-01
Identity = 19/34 (55.88%), Postives = 28/34 (82.35%), Query Frame = 1 

Query: 11 SADSDRAVRNFSPQRQPKSHKVRDHIKASQNVQS 45
          S DSD+ +RNF P+R+ K HK RDH+++SQ+V+S
Sbjct: 5  SDDSDKQLRNFRPRRKLKYHKERDHVESSQSVRS 38


HSP 2 Score: 98.2 bits (243), Expect = 1.5e-17
Identity = 53/92 (57.61%), Postives = 65/92 (70.65%), Query Frame = 1 

Query: 11  SADSDRAVRNFSPQRQPKSHKVRDHIKASQNVQSKKETQLQLVSSLSKVKAVPERIEVVK 70
           S DSDR   NFS Q QPKSHKV DH+   QNVQSK+ETQLQ+V  LSK +AVP++I++V+
Sbjct: 345 SDDSDRGTGNFSSQHQPKSHKVLDHVDTLQNVQSKRETQLQVVPRLSKAEAVPKQIKIVR 404

Query: 71  PAASSNKDTAEDKLSEVENGAANRPKPTGQGS 103
           PAA+SN+D      S+VEN    R K  G GS
Sbjct: 405 PAATSNEDIFVYHQSKVEN---RRLKSIGHGS 433

The following BLAST results are available for this feature:
BLAST of MELO3C015356 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LW42_CUCSA2.5e-1963.04Uncharacterized protein OS=Cucumis sativus GN=Csa_1G572360 PE=4 SV=1[more]
A0A0A0LW42_CUCSA1.4e-0155.88Uncharacterized protein OS=Cucumis sativus GN=Csa_1G572360 PE=4 SV=1[more]
BLAST of MELO3C015356 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659099645|ref|XP_008450705.1|2.0e-94100.00PREDICTED: uncharacterized protein LOC103492204 isoform X2 [Cucumis melo][more]
gi|659099645|ref|XP_008450705.1|1.7e-0875.56PREDICTED: uncharacterized protein LOC103492204 isoform X2 [Cucumis melo][more]
gi|659099643|ref|XP_008450704.1|1.7e-0875.56PREDICTED: uncharacterized protein LOC103492204 isoform X1 [Cucumis melo][more]
gi|700211019|gb|KGN66115.1|3.6e-1963.04hypothetical protein Csa_1G572360 [Cucumis sativus][more]
gi|700211019|gb|KGN66115.1|2.0e-0155.88hypothetical protein Csa_1G572360 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU55365melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C015356T1MELO3C015356T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU55365MU55365transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C015356Cucumber (Chinese Long) v3cucmeB042
MELO3C015356Watermelon (97103) v2mewmbB249
MELO3C015356Watermelon (97103) v2mewmbB260
MELO3C015356Wax gourdmewgoB294
MELO3C015356Wax gourdmewgoB314
MELO3C015356Cucumber (Gy14) v1cgymeB286
MELO3C015356Cucurbita maxima (Rimu)cmameB122
MELO3C015356Cucurbita moschata (Rifu)cmomeB066
MELO3C015356Cucurbita moschata (Rifu)cmomeB110
MELO3C015356Wild cucumber (PI 183967)cpimeB042
MELO3C015356Cucumber (Chinese Long) v2cumeB041
MELO3C015356Watermelon (Charleston Gray)mewcgB245
MELO3C015356Watermelon (97103) v1mewmB271
MELO3C015356Cucurbita pepo (Zucchini)cpemeB622
MELO3C015356Bottle gourd (USVL1VR-Ls)lsimeB396
MELO3C015356Cucumber (Gy14) v2cgybmeB038
MELO3C015356Silver-seed gourdcarmeB0555