MELO3C015202 (gene) Melon (DHL92) v3.5.1

NameMELO3C015202
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionZinc finger A20 and AN1 domain-containing stress-associated protein 8
Locationchr2 : 5319318 .. 5321970 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTCGCCATCAATCAGTAGCCACAGTTGTTGTTCCCTCCGGAGAAATTCAGCCAATTCGAAAATGGAGATGACCACGCATCACACATAGTTCTCTCTTTCTTCCCTTCTTCTACCTTCCCCATTCCCTTTCTTCTTCTACGGTTAGGGTTTCTAATCCCCTTTCTCTTTCCTTTCCAATTTTTTGCATCTTTTTTTTTTTTTACTTGCTTTCTCTTAATTTTATTCCTTTTTTCTTTTTCTTTTTTTAATTTCTCCTTTGAATTAACACAGGGGTTTTGCTTGCACGCCAATTCCATCTTGAAGATCGGTCAAAAACCCTTGTTTTTAAGGGTTAAAGGGGTATGATAATTTCTTTTTTCTTCTTCTATGCCTGTGTTGTAACGTTTCTACTGATTGAATAACTAGATATGTGTTGGTAGAAATGTTTGAATATGGATGTTATTTATGAGCCTAGTGATGGAAGTATAGATATATGTGTGTGTGTGTCAGGATTGTTTCACTCTTGAATTTTGATTGTTTAATGCGGACTCTGTGGGTTGCTGATGGTATACTGATCAAGGCTCCGATAAAGATGATTTAGGAAGTGTTTAAATTTTCATTATAGATTTGGGTTTTTGAAATCATAGTTGGATGGTGTCAATTTTTTGTTATGAGTTTATGTTATTATGAGTACATGAGTCATTTGATTAAGGTTCAGTTGTGGATTCAAGCATCCTATTGTTGTTGTTTTTATATCCCACGACTTGTTTTGGGTTGAAGGTTGATTGGGATGGATAATATGTTGCTTTGGAGTTCAGTATTTTTTTTTTTCTTTCTGATGAGTATTCTATGGATTTATAATTTAACTCAAGAGTGTTCAAGATATGAAGACTGGGAAATTATAGCCATTTTTCTCATTGGTGGCATGAAACTATAAGAAGAGCATTGATGGAATTTGTTTTTATCTCTATAGTGATTAATTAATTAAATTAAGGTCTTCTTGGTTTTTCGCTTTTGATAATTATGCTGGTTTTCTCACAAATTCTTTACCATAGTCTTCATCTTTCCTAATGAACACTTCAATTGTTAGCCCCCAAAAAGAAAAAAAAATTATTGTTATTTAGTTTTTAAAACTTAGCTTGGCGTTTGAAAGAACTCCTAAAGAGTAGATAACAAAACAAAGAAATTGATTGATGGAAGTAGTGTTTTAGTGTTTAATTTTCAAAAACCACAAACTCAAAATCAAATGATGATCAAATGGCGCCGAAGTCTCTTGATTCTTTTGGTCATCTTTTTGGTTTCTTGGTTTCTGCTGTTAATGTAGGAAAGACAATTCGTGGATAAGATGCGAGTCTCTTTTGATACAAAGTCATGTACTTATGTGAGGACAACCTTTTATGGCTACCTGTTCATGCTTTTCTTCTCTTCTATAATTTATGATTTTATCCTCGTAGCAAGTTTTATTCTTCCTTGAATTCCAATTTATAATTTGTGTAGTTTCTCCATTTTCCCGGCTTGTAGTTAATGCCTATGAATGAGATTAGCCTAAGAATTATACATTACCTTTCCATACCCCTAATTAATTGCATTATTGGTACCTCAAACATGCATAAATTACATTCTGTATCATCGTCATCTGTGTGGTATAGAGTTTGATATCCTCGAGCTCATACTAGTAATAGCAGATGTATTTGATATCAATCATGGCATCATCCTGATTCTTAGTACAGTCTACCTATTAAATGAAATTATGTATAGTTCTGTTTCCCACCCACAAGGAAAAGAAACAAATTCATGTGAATGTGTTGCAGGAGATTGATAAGATGGAACATGACGAGGCAAGCTGTCAAGCTCCCCCTGAGGGTCCCTTTCTATGCATCAACAACTGTGGCTTCTTCGGAAGTGCAGCTACTATGAATATGTGTTCTAAGTGCCACAAGGACTTGATGTTGAAACAAGAACAGGCTAAACTCAGTGCTTCGACTTTTGGAAGTATCATGAATGGATCATCTAGTTCTAACCAAAATGAAACCTTTGCCACCGCAAGTGTGGATGATCCAGTTAGCTTGGTGGAGCCTAAGATCACGTCAATGCAGGCATCCCCCGTGGTTATTTCTGATGAGAACAGTGGAGCGAAGCCAAAGGACAGGCCTAGACGTTGCAATAGTTGCAACAAGCGAGTTGGATTAATGGGATTTGACTGTCGTTGTGGTAACATCTTCTGCGCCATTCATCGTTACTCTGACAAACACAATTGCCCCTTTGATTACCGCACTTCTGCACAGGATGCAATTGCTAAAGCCAACCCGATTGTGAAGGCAGAGAAGCTTGATAAGATCTAAGTGAAAATCAGGCCAAAGGCGGGCTGGACCCCTTATAATGTGTTGATCTTTGTCGTCGTCATCGCCTAGATGATTTCTGCTTTGCTGCATGCATATCTTGTAACCTGTTGTGTATTGTTATATTTGGAGGGGAGGGTATGGAAAAATCTTTGCATCTTTGCAGTCTGAAAGAAAATGTAGGAAGGCAGTACGCCGGTTTCGTTGTTTTTCTTGTTCTTACAACGGTTTAACGTTATCAACATTAGCGTGTTACGTTACTGTATCGTCATAAAGTGTCTTGAGGAATACATATATGAATGCATGCTGCCCTTGTTTGATTTGTTTATGAGCA

mRNA sequence

GGTCGCCATCAATCAGTAGCCACAGTTGTTGTTCCCTCCGGAGAAATTCAGCCAATTCGAAAATGGAGATGACCACGCATCACACATAGTTCTCTCTTTCTTCCCTTCTTCTACCTTCCCCATTCCCTTTCTTCTTCTACGGGGTTTTGCTTGCACGCCAATTCCATCTTGAAGATCGGTCAAAAACCCTTGTTTTTAAGGGAGATTGATAAGATGGAACATGACGAGGCAAGCTGTCAAGCTCCCCCTGAGGGTCCCTTTCTATGCATCAACAACTGTGGCTTCTTCGGAAGTGCAGCTACTATGAATATGTGTTCTAAGTGCCACAAGGACTTGATGTTGAAACAAGAACAGGCTAAACTCAGTGCTTCGACTTTTGGAAGTATCATGAATGGATCATCTAGTTCTAACCAAAATGAAACCTTTGCCACCGCAAGTGTGGATGATCCAGTTAGCTTGGTGGAGCCTAAGATCACGTCAATGCAGGCATCCCCCGTGGTTATTTCTGATGAGAACAGTGGAGCGAAGCCAAAGGACAGGCCTAGACGTTGCAATAGTTGCAACAAGCGAGTTGGATTAATGGGATTTGACTGTCGTTGTGGTAACATCTTCTGCGCCATTCATCGTTACTCTGACAAACACAATTGCCCCTTTGATTACCGCACTTCTGCACAGGATGCAATTGCTAAAGCCAACCCGATTGTGAAGGCAGAGAAGCTTGATAAGATCTAAGTGAAAATCAGGCCAAAGGCGGGCTGGACCCCTTATAATGTGTTGATCTTTGTCGTCGTCATCGCCTAGATGATTTCTGCTTTGCTGCATGCATATCTTGTAACCTGTTGTGTATTGTTATATTTGGAGGGGAGGGTATGGAAAAATCTTTGCATCTTTGCAGTCTGAAAGAAAATGTAGGAAGGCAGTACGCCGGTTTCGTTGTTTTTCTTGTTCTTACAACGGTTTAACGTTATCAACATTAGCGTGTTACGTTACTGTATCGTCATAAAGTGTCTTGAGGAATACATATATGAATGCATGCTGCCCTTGTTTGATTTGTTTATGAGCA

Coding sequence (CDS)

ATGGAACATGACGAGGCAAGCTGTCAAGCTCCCCCTGAGGGTCCCTTTCTATGCATCAACAACTGTGGCTTCTTCGGAAGTGCAGCTACTATGAATATGTGTTCTAAGTGCCACAAGGACTTGATGTTGAAACAAGAACAGGCTAAACTCAGTGCTTCGACTTTTGGAAGTATCATGAATGGATCATCTAGTTCTAACCAAAATGAAACCTTTGCCACCGCAAGTGTGGATGATCCAGTTAGCTTGGTGGAGCCTAAGATCACGTCAATGCAGGCATCCCCCGTGGTTATTTCTGATGAGAACAGTGGAGCGAAGCCAAAGGACAGGCCTAGACGTTGCAATAGTTGCAACAAGCGAGTTGGATTAATGGGATTTGACTGTCGTTGTGGTAACATCTTCTGCGCCATTCATCGTTACTCTGACAAACACAATTGCCCCTTTGATTACCGCACTTCTGCACAGGATGCAATTGCTAAAGCCAACCCGATTGTGAAGGCAGAGAAGCTTGATAAGATCTAA
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000058Znf_AN1
IPR002653Znf_A20
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003677DNA binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007067 mitotic nuclear division
biological_process GO:0048573 photoperiodism, flowering
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003677 DNA binding
molecular_function GO:0008270 zinc ion binding
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU45301melon EST collection version 4.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C015202T2MELO3C015202T2mRNA
MELO3C015202T3MELO3C015202T3mRNA
MELO3C015202T1MELO3C015202T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU45301MU45301transcribed_cluster


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000058Zinc finger, AN1-typeGENE3DG3DSA:4.10.1110.10coord: 98..168
score: 2.6
IPR000058Zinc finger, AN1-typePFAMPF01428zf-AN1coord: 113..149
score: 6.1
IPR000058Zinc finger, AN1-typeSMARTSM00154AN1_Zf_4coord: 113..150
score: 6.2
IPR000058Zinc finger, AN1-typePROFILEPS51039ZF_AN1coord: 110..153
score: 12
IPR002653Zinc finger, A20-typePFAMPF01754zf-A20coord: 17..39
score: 1.0
IPR002653Zinc finger, A20-typeSMARTSM00259A20_3coord: 15..39
score: 8.
IPR002653Zinc finger, A20-typePROFILEPS51036ZF_A20coord: 12..46
score: 9
NoneNo IPR availablePANTHERPTHR10634AN1-TYPE ZINC FINGER PROTEINcoord: 1..172
score: 1.1
NoneNo IPR availablePANTHERPTHR10634:SF32SUBFAMILY NOT NAMEDcoord: 1..172
score: 1.1
NoneNo IPR availableunknownSSF118310AN1-like Zinc fingercoord: 100..167
score: 1.02
NoneNo IPR availableunknownSSF57716Glucocorticoid receptor-like (DNA-binding domain)coord: 17..54
score: 1.34

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
MELO3C015202MELO3C014608Melon (DHL92) v3.5.1memeB109
The following block(s) are covering this gene:

None