MELO3C015179 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C015179
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPhosphoribosylformylglycinamidine cyclo-ligase
Locationchr2 : 5771363 .. 5772145 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAAATCGCAGAAGGTTTACTGCTATAAGACCTCCAGTTGAGCAATTTGATATGGATGTAACTCAAGAATACATCAATTGGTACAAAAACATTACCAGGCTCTATATTATCCAACCAGGAGCTATTGTGAGTTATCTGATATACATTTAAATATTGTATAGTTGTTTTTAGTGCAAATTTGTTTTCAATGCTTTTTAATTCATTTTAATATTTTACATAGATCAAATAATAATAGACTTAAGAATGTTGCAGATGATCCACAACAGGTCCTAAATATATGCAACGATAACGAGCAATACATAGAGAACATTCACTATATGTACGATGTCCCTATTGTACATGCTCCAATTCAGAGGAGACGTTCTCTAGTGCAAGAGTCCGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCCGTGACACAGACACAAAGCGAGCATGGTTACGTTAGTCCAGTAATGATGATGCGAGCATTTGAAACAACATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTTGGAACAGGATATTATAATTCAAAGGCAGGTTCGTCATCATCAAACTTTAGACAACAATACTGTGATTTAGGGAGCGATTCATCGTCTTCATACATGCATTGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCGATACTCGAGCAATCAGATGAGCAACAACAACAAGAGAATCAGGAGGAAATACAGCAACAAAGAGTTCAGAGTCGAAACAAAACCAACTAG

mRNA sequence

ATGGCTAAATCGCAGAAGGTCCTAAATATATGCAACGATAACGAGCAATACATAGAGAACATTCACTATATGTACGATGTCCCTATTGTACATGCTCCAATTCAGAGGAGACGTTCTCTAGTGCAAGAGTCCGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCCGTGACACAGACACAAAGCGAGCATGGTTACGTTAGTCCAGTAATGATGATGCGAGCATTTGAAACAACATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTTGGAACAGGATATTATAATTCAAAGGCAGGTTCGTCATCATCAAACTTTAGACAACAATACTGTGATTTAGGGAGCGATTCATCGTCTTCATACATGCATTGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCGATACTCGAGCAATCAGATGAGCAACAACAACAAGAGAATCAGGAGGAAATACAGCAACAAAGAGTTCAGAGTCGAAACAAAACCAACTAG

Coding sequence (CDS)

ATGGCTAAATCGCAGAAGGTCCTAAATATATGCAACGATAACGAGCAATACATAGAGAACATTCACTATATGTACGATGTCCCTATTGTACATGCTCCAATTCAGAGGAGACGTTCTCTAGTGCAAGAGTCCGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCCGTGACACAGACACAAAGCGAGCATGGTTACGTTAGTCCAGTAATGATGATGCGAGCATTTGAAACAACATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTTGGAACAGGATATTATAATTCAAAGGCAGGTTCGTCATCATCAAACTTTAGACAACAATACTGTGATTTAGGGAGCGATTCATCGTCTTCATACATGCATTGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCGATACTCGAGCAATCAGATGAGCAACAACAACAAGAGAATCAGGAGGAAATACAGCAACAAAGAGTTCAGAGTCGAAACAAAACCAACTAG

Protein sequence

MAKSQKVLNICNDNEQYIENIHYMYDVPIVHAPIQRRRSLVQESDQLEEVDQHVEEVPPVTQTQSEHGYVSPVMMMRAFETTYYDSGVGQSSDFGTGYYNSKAGSSSSNFRQQYCDLGSDSSSSYMHCHGRGRGEHNEYLYYEVPAAILEQSDEQQQQENQEEIQQQRVQSRNKTN*
Homology
[Close]
BLAST of MELO3C015179 vs. NCBI nr
Match: gi|659069376|ref|XP_008449513.1| (PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo])

HSP 1 Score: 278.5 bits (711), Expect = 8.2e-72
Identity = 142/187 (75.94%), Postives = 152/187 (81.28%), Query Frame = 1 

Query: 5   QKVLNICNDNEQYIENIHYMYDVPIVHAPIQRRRSLVQESDQLEEVDQHVEEVPPVTQTQ 64
           Q+VLNICNDNEQY+ENIHYMYDVPIV AP+QRRR LVQESDQLEEVDQH EEVPP+TQTQ
Sbjct: 64  QQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQ 123

Query: 65  --SEHGYVSPVMMMRAFETTYYDSGVGQSSDFGTGYYNSKAGSSSSNFRQQYCDLGSDSS 124
             SEH YVSPVMMM  F  TYYDSGVGQSSDFG GYYNS+AG SS++F QQY DLGSD S
Sbjct: 124 TQSEHNYVSPVMMMPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPS 183

Query: 125 SSYMHCHGRGRGEHNEYLYYEVP---------------AAILEQSDEQQQQENQEEIQQQ 175
           SSYMH HGRGRGEHNEYLYY+VP               AA+ EQSDEQQQQEN EEIQQQ
Sbjct: 184 SSYMHGHGRGRGEHNEYLYYKVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQQQ 243

[Close]
BLAST of MELO3C015179 vs. NCBI nr
Match: gi|778688386|ref|XP_011652738.1| (PREDICTED: uncharacterized protein LOC105435074 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 4.1e-23
Identity = 59/71 (83.10%), Postives = 62/71 (87.32%), Query Frame = 1 

Query: 43  ESDQLEEVDQHVEEVPPVTQTQSEHGYVSPVMMMRAFETTYYDSGVGQSSDFGTGYYNSK 102
           +SDQLEEVDQ+VEEV PVTQTQSEHGYVS VMMM  F TTYYD GVGQSSDF T YYNS+
Sbjct: 167 KSDQLEEVDQNVEEVAPVTQTQSEHGYVSLVMMMPTFGTTYYDYGVGQSSDFRTWYYNSE 226

Query: 103 AGSSSSNFRQQ 114
           AGSSSSNF QQ
Sbjct: 227 AGSSSSNFGQQ 237

[Close]
BLAST of MELO3C015179 vs. NCBI nr
Match: gi|659123452|ref|XP_008461671.1| (PREDICTED: CASP-like protein RCOM_0464280 isoform X2 [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 3.2e-15
Identity = 44/54 (81.48%), Postives = 49/54 (90.74%), Query Frame = 1 

Query: 5   QKVLNICNDNEQYIENIHYMYDVPIVHAPIQRRRSLVQESDQLEEVDQHVEEVP 59
           Q+VLNICNDNEQY+ENIHYMY+V IV A +QRRR LVQES+QLEEV QHVEEVP
Sbjct: 169 QQVLNICNDNEQYMENIHYMYNVLIVPALVQRRRPLVQESNQLEEVVQHVEEVP 222

[Close]
BLAST of MELO3C015179 vs. NCBI nr
Match: gi|659123450|ref|XP_008461670.1| (PREDICTED: CASP-like protein RCOM_0464280 isoform X1 [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 3.2e-15
Identity = 44/54 (81.48%), Postives = 49/54 (90.74%), Query Frame = 1 

Query: 5   QKVLNICNDNEQYIENIHYMYDVPIVHAPIQRRRSLVQESDQLEEVDQHVEEVP 59
           Q+VLNICNDNEQY+ENIHYMY+V IV A +QRRR LVQES+QLEEV QHVEEVP
Sbjct: 176 QQVLNICNDNEQYMENIHYMYNVLIVPALVQRRRPLVQESNQLEEVVQHVEEVP 229

The following BLAST results are available for this feature:
BLAST of MELO3C015179 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659069376|ref|XP_008449513.1|8.2e-7275.94PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo][more]
gi|778688386|ref|XP_011652738.1|4.1e-2383.10PREDICTED: uncharacterized protein LOC105435074 [Cucumis sativus][more]
gi|659123452|ref|XP_008461671.1|3.2e-1581.48PREDICTED: CASP-like protein RCOM_0464280 isoform X2 [Cucumis melo][more]
gi|659123450|ref|XP_008461670.1|3.2e-1581.48PREDICTED: CASP-like protein RCOM_0464280 isoform X1 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C015179T1MELO3C015179T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 154..174
scor