MELO3C015163 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C015163
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Gamma-tubulin complex component 4-like protein
Location	chr2 : 6188094 .. 6188273 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATTGGAAAAATCATGGGCATCCCTCATGCACCAAGATCATGCCGATTTTGCTAACATTCGCAATGCTCAATTTGATGGTTCAATATCTCTGCAGCGAAGACAACGTTTTAGACGGATGTGGCGTGTAAGAGAACATATGGCATTCTTGATTAGAAATCTTCAGTTTTATATCCAG

mRNA sequence

ATGGAATTGGAAAAATCATGGGCATCCCTCATGCACCAAGATCATGCCGATTTTGCTAACATTCGCAATGCTCAATTTGATGGTTCAATATCTCTGCAGCGAAGACAACGTTTTAGACGGATGTGGCGTGTAAGAGAACATATGGCATTCTTGATTAGAAATCTTCAGTTTTATATCCAG

Coding sequence (CDS)

ATGGAATTGGAAAAATCATGGGCATCCCTCATGCACCAAGATCATGCCGATTTTGCTAACATTCGCAATGCTCAATTTGATGGTTCAATATCTCTGCAGCGAAGACAACGTTTTAGACGGATGTGGCGTGTAAGAGAACATATGGCATTCTTGATTAGAAATCTTCAGTTTTATATCCAG

Protein sequence

MELEKSWASLMHQDHADFANIRNAQFDGSISLQRRQRFRRMWRVREHMAFLIRNLQFYIQ

Homology

[Close]

BLAST of MELO3C015163 vs. Swiss-Prot
Match: GACP4_ARATH (Gamma-tubulin complex component 4 OS=Arabidopsis thaliana GN=GCP4 PE=2 SV=2)

HSP 1 Score: 90.1 bits (222), Expect = 8.8e-18
Identity = 44/60 (73.33%), Postives = 45/60 (75.00%), Query Frame = 1


Query: 1   MELEKSWASLMHQDHADFANIRNAQFDGSISLQRRQRFRRMWRVREHMAFLIRNLQFYIQ 60
           MELEKSWAS+MHQDH + A  R    +GS S QRRQ  R MWRVREHMAFLIRNLQFYIQ
Sbjct: 546 MELEKSWASVMHQDHIESAQHRKDGLNGSTSQQRRQGIRPMWRVREHMAFLIRNLQFYIQ 605

[Close]

BLAST of MELO3C015163 vs. Swiss-Prot
Match: GCP4_MEDTR (Gamma-tubulin complex component 4 homolog OS=Medicago truncatula GN=85P PE=2 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 8.2e-16
Identity = 43/61 (70.49%), Postives = 46/61 (75.41%), Query Frame = 1


Query: 1   MELEKSWASLMHQDHADFANIRNAQFDGS-ISLQRRQRFRRMWRVREHMAFLIRNLQFYI 60
           MELEK WAS+MHQ H+ FA  + +  D S I+ QR QRFR MWRVREHMAFLIRNLQFYI
Sbjct: 535 MELEKLWASVMHQYHSIFAKNKKSDQDKSPITQQRDQRFRSMWRVREHMAFLIRNLQFYI 594

[Close]

BLAST of MELO3C015163 vs. TrEMBL
Match: A0A0A0LXP4_CUCSA (Gamma-tubulin complex component OS=Cucumis sativus GN=Csa_1G616260 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.0e-25
Identity = 58/60 (96.67%), Postives = 58/60 (96.67%), Query Frame = 1


Query: 1   MELEKSWASLMHQDHADFANIRNAQFDGSISLQRRQRFRRMWRVREHMAFLIRNLQFYIQ 60
           MELEKSWASLMHQDHADFAN R AQFDGSISLQRRQRFRRMWRVREHMAFLIRNLQFYIQ
Sbjct: 333 MELEKSWASLMHQDHADFANNRKAQFDGSISLQRRQRFRRMWRVREHMAFLIRNLQFYIQ 392

[Close]

BLAST of MELO3C015163 vs. TrEMBL
Match: A0A164YZ83_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018329 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.2e-18
Identity = 47/60 (78.33%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 1   MELEKSWASLMHQDHADFANIRNAQFDGSISLQRRQRFRRMWRVREHMAFLIRNLQFYIQ 60
           MELEKSWAS+MHQDH DFA  RN + + S S QRRQRFR MWR+REHMAFLIRNLQFYIQ
Sbjct: 513 MELEKSWASVMHQDHTDFARRRNDRLNCSTSQQRRQRFRPMWRIREHMAFLIRNLQFYIQ 572

[Close]

BLAST of MELO3C015163 vs. TrEMBL
Match: B9I9Q8_POPTR (Gamma-tubulin complex component OS=Populus trichocarpa GN=POPTR_0014s12310g PE=3 SV=2)

HSP 1 Score: 99.8 bits (247), Expect = 1.2e-18
Identity = 47/60 (78.33%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 1   MELEKSWASLMHQDHADFANIRNAQFDGSISLQRRQRFRRMWRVREHMAFLIRNLQFYIQ 60
           MELEKSWAS+MHQDH DFA  RN + + S+S QRRQRFR MW VREHMAFLIRNLQFYIQ
Sbjct: 535 MELEKSWASVMHQDHTDFAKRRNDRLNCSVSQQRRQRFRPMWHVREHMAFLIRNLQFYIQ 594

[Close]

BLAST of MELO3C015163 vs. TrEMBL
Match: A0A022S453_ERYGU (Gamma-tubulin complex component OS=Erythranthe guttata GN=MIMGU_mgv1a001863mg PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.2e-18
Identity = 48/60 (80.00%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 1   MELEKSWASLMHQDHADFANIRNAQFDGSISLQRRQRFRRMWRVREHMAFLIRNLQFYIQ 60
           MELEKSWAS MHQDH+DFA  R+   + SIS QRRQRFR MWRVREHMAFLIRNLQFYIQ
Sbjct: 545 MELEKSWASAMHQDHSDFAKRRSDGINSSISQQRRQRFRPMWRVREHMAFLIRNLQFYIQ 604

[Close]

BLAST of MELO3C015163 vs. TrEMBL
Match: A0A0J8C176_BETVU (Gamma-tubulin complex component OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g163840 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.2e-18
Identity = 48/60 (80.00%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 1   MELEKSWASLMHQDHADFANIRNAQFDGSISLQRRQRFRRMWRVREHMAFLIRNLQFYIQ 60
           MELEKSWAS+MHQDH+DFA  RN +   S S QRRQRFR MWRVREHMAFLIRNLQFYIQ
Sbjct: 547 MELEKSWASVMHQDHSDFAKHRNDRIKCSTSQQRRQRFRPMWRVREHMAFLIRNLQFYIQ 606

[Close]

BLAST of MELO3C015163 vs. TAIR10
Match: AT3G53760.1 (AT3G53760.1 GAMMA-TUBULIN COMPLEX PROTEIN 4)

HSP 1 Score: 90.1 bits (222), Expect = 4.9e-19
Identity = 44/60 (73.33%), Postives = 45/60 (75.00%), Query Frame = 1


Query: 1   MELEKSWASLMHQDHADFANIRNAQFDGSISLQRRQRFRRMWRVREHMAFLIRNLQFYIQ 60
           MELEKSWAS+MHQDH + A  R    +GS S QRRQ  R MWRVREHMAFLIRNLQFYIQ
Sbjct: 546 MELEKSWASVMHQDHIESAQHRKDGLNGSTSQQRRQGIRPMWRVREHMAFLIRNLQFYIQ 605

[Close]

BLAST of MELO3C015163 vs. NCBI nr
Match: gi|659099014|ref|XP_008450390.1| (PREDICTED: gamma-tubulin complex component 4 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 126.3 bits (316), Expect = 1.8e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 1   MELEKSWASLMHQDHADFANIRNAQFDGSISLQRRQRFRRMWRVREHMAFLIRNLQFYIQ 60
           MELEKSWASLMHQDHADFANIRNAQFDGSISLQRRQRFRRMWRVREHMAFLIRNLQFYIQ
Sbjct: 507 MELEKSWASLMHQDHADFANIRNAQFDGSISLQRRQRFRRMWRVREHMAFLIRNLQFYIQ 566

[Close]

BLAST of MELO3C015163 vs. NCBI nr
Match: gi|659099008|ref|XP_008450387.1| (PREDICTED: gamma-tubulin complex component 4 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 126.3 bits (316), Expect = 1.8e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 1   MELEKSWASLMHQDHADFANIRNAQFDGSISLQRRQRFRRMWRVREHMAFLIRNLQFYIQ 60
           MELEKSWASLMHQDHADFANIRNAQFDGSISLQRRQRFRRMWRVREHMAFLIRNLQFYIQ
Sbjct: 551 MELEKSWASLMHQDHADFANIRNAQFDGSISLQRRQRFRRMWRVREHMAFLIRNLQFYIQ 610

[Close]

BLAST of MELO3C015163 vs. NCBI nr
Match: gi|659130829|ref|XP_008465374.1| (PREDICTED: gamma-tubulin complex component 4 homolog [Cucumis melo])

HSP 1 Score: 123.6 bits (309), Expect = 1.1e-25
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 1


Query: 1   MELEKSWASLMHQDHADFANIRNAQFDGSISLQRRQRFRRMWRVREHMAFLIRNLQFYIQ 60
           MELEKSWASLMHQDHADFAN RNAQFDGSISLQRRQRFRRMWRVREHMAFLIRNLQFYIQ
Sbjct: 551 MELEKSWASLMHQDHADFANNRNAQFDGSISLQRRQRFRRMWRVREHMAFLIRNLQFYIQ 610

[Close]

BLAST of MELO3C015163 vs. NCBI nr
Match: gi|778663742|ref|XP_011660150.1| (PREDICTED: gamma-tubulin complex component 4 homolog [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 5.7e-25
Identity = 58/60 (96.67%), Postives = 58/60 (96.67%), Query Frame = 1


Query: 1   MELEKSWASLMHQDHADFANIRNAQFDGSISLQRRQRFRRMWRVREHMAFLIRNLQFYIQ 60
           MELEKSWASLMHQDHADFAN R AQFDGSISLQRRQRFRRMWRVREHMAFLIRNLQFYIQ
Sbjct: 550 MELEKSWASLMHQDHADFANNRKAQFDGSISLQRRQRFRRMWRVREHMAFLIRNLQFYIQ 609

[Close]

BLAST of MELO3C015163 vs. NCBI nr
Match: gi|700211412|gb|KGN66508.1| (hypothetical protein Csa_1G616260 [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 5.7e-25
Identity = 58/60 (96.67%), Postives = 58/60 (96.67%), Query Frame = 1


Query: 1   MELEKSWASLMHQDHADFANIRNAQFDGSISLQRRQRFRRMWRVREHMAFLIRNLQFYIQ 60
           MELEKSWASLMHQDHADFAN R AQFDGSISLQRRQRFRRMWRVREHMAFLIRNLQFYIQ
Sbjct: 333 MELEKSWASLMHQDHADFANNRKAQFDGSISLQRRQRFRRMWRVREHMAFLIRNLQFYIQ 392

The following BLAST results are available for this feature:

BLAST of MELO3C015163 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GACP4_ARATH	8.8e-18	73.33	Gamma-tubulin complex component 4 OS=Arabidopsis thaliana GN=GCP4 PE=2 SV=2	[more]
GCP4_MEDTR	8.2e-16	70.49	Gamma-tubulin complex component 4 homolog OS=Medicago truncatula GN=85P PE=2 SV=...	[more]

BLAST of MELO3C015163 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXP4_CUCSA	4.0e-25	96.67	Gamma-tubulin complex component OS=Cucumis sativus GN=Csa_1G616260 PE=3 SV=1	[more]
A0A164YZ83_DAUCA	1.2e-18	78.33	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018329 PE=4 SV=1	[more]
B9I9Q8_POPTR	1.2e-18	78.33	Gamma-tubulin complex component OS=Populus trichocarpa GN=POPTR_0014s12310g PE=3...	[more]
A0A022S453_ERYGU	1.2e-18	80.00	Gamma-tubulin complex component OS=Erythranthe guttata GN=MIMGU_mgv1a001863mg PE...	[more]
A0A0J8C176_BETVU	1.2e-18	80.00	Gamma-tubulin complex component OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g16384...	[more]

BLAST of MELO3C015163 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G53760.1	4.9e-19	73.33	GAMMA-TUBULIN COMPLEX PROTEIN 4	[more]

BLAST of MELO3C015163 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659099014\|ref\|XP_008450390.1\|	1.8e-26	100.00	PREDICTED: gamma-tubulin complex component 4 homolog isoform X2 [Cucumis melo]	[more]
gi\|659099008\|ref\|XP_008450387.1\|	1.8e-26	100.00	PREDICTED: gamma-tubulin complex component 4 homolog isoform X1 [Cucumis melo]	[more]
gi\|659130829\|ref\|XP_008465374.1\|	1.1e-25	98.33	PREDICTED: gamma-tubulin complex component 4 homolog [Cucumis melo]	[more]
gi\|778663742\|ref\|XP_011660150.1\|	5.7e-25	96.67	PREDICTED: gamma-tubulin complex component 4 homolog [Cucumis sativus]	[more]
gi\|700211412\|gb\|KGN66508.1\|	5.7e-25	96.67	hypothetical protein Csa_1G616260 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043622	cortical microtubule organization
biological_process	GO:0007126	meiotic nuclear division
biological_process	GO:0031122	cytoplasmic microtubule organization
biological_process	GO:0051298	centrosome duplication
biological_process	GO:0048449	floral organ formation
biological_process	GO:0090307	mitotic spindle assembly
biological_process	GO:0051415	interphase microtubule nucleation by interphase microtubule organizing center
biological_process	GO:0006364	rRNA processing
biological_process	GO:0009624	response to nematode
biological_process	GO:0009909	regulation of flower development
biological_process	GO:0007020	microtubule nucleation
biological_process	GO:0016570	histone modification
biological_process	GO:0040007	growth
cellular_component	GO:0005816	spindle pole body
cellular_component	GO:0000930	gamma-tubulin complex
cellular_component	GO:0000923	equatorial microtubule organizing center
cellular_component	GO:0005813	centrosome
cellular_component	GO:0005874	microtubule
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0045298	tubulin complex
cellular_component	GO:0000922	spindle pole
cellular_component	GO:0032040	small-subunit processome
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005815	microtubule organizing center
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0051011	microtubule minus-end binding
molecular_function	GO:0005200	structural constituent of cytoskeleton
molecular_function	GO:0043015	gamma-tubulin binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C015163T1	MELO3C015163T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C015163	Csa1G616260	Cucumber (Chinese Long) v2	cumeB041
MELO3C015163	Cla006322	Watermelon (97103) v1	mewmB271
MELO3C015163	ClCG03G013010	Watermelon (Charleston Gray)	mewcgB245
MELO3C015163	Cla97C03G063220	Watermelon (97103) v2	mewmbB249
MELO3C015163	Bhi02G001289	Wax gourd	mewgoB305
MELO3C015163	CSPI01G30590	Wild cucumber (PI 183967)	cpimeB042
MELO3C015163	Cucsa.055300	Cucumber (Gy14) v1	cgymeB039
MELO3C015163	Lsi06G005450	Bottle gourd (USVL1VR-Ls)	lsimeB396
MELO3C015163	CsGy1G029920	Cucumber (Gy14) v2	cgybmeB038
MELO3C015163	CsaV3_1G043050	Cucumber (Chinese Long) v3	cucmeB042

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C015163	Cucumber (Chinese Long) v3	cucmeB474
MELO3C015163	Watermelon (97103) v2	mewmbB243
MELO3C015163	Wax gourd	mewgoB278
MELO3C015163	Melon (DHL92) v3.5.1	memeB109
MELO3C015163	Cucurbita moschata (Rifu)	cmomeB097
MELO3C015163	Cucurbita maxima (Rimu)	cmameB066
MELO3C015163	Cucurbita maxima (Rimu)	cmameB104
MELO3C015163	Cucurbita moschata (Rifu)	cmomeB058
MELO3C015163	Wild cucumber (PI 183967)	cpimeB463
MELO3C015163	Watermelon (Charleston Gray)	mewcgB238
MELO3C015163	Watermelon (97103) v1	mewmB283
MELO3C015163	Cucurbita pepo (Zucchini)	cpemeB329
MELO3C015163	Cucurbita pepo (Zucchini)	cpemeB620
MELO3C015163	Bottle gourd (USVL1VR-Ls)	lsimeB069
MELO3C015163	Cucumber (Gy14) v2	cgybmeB405
MELO3C015163	Silver-seed gourd	carmeB0432
MELO3C015163	Silver-seed gourd	carmeB0472
MELO3C015163	Silver-seed gourd	carmeB0527