MELO3C015158 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C015158
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionNuclear cap-binding subunit 1-like protein
Locationchr2 : 6236473 .. 6239788 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCCACAAAGAGTGTTTGTGAAGGAGGTTCTGGATCGAGAGGTCCGTCTATCATATTGGGATAAAGTAAAGCAGGTATTTATCATGCTAGAAACTGCTGACATTTTTGTCACAGATACTTCTATTATTCAGATATTTGTACTGCCATGTTTGTAAAATAAAATAGTCCTTCATAGACAATATGGAATGTATGATTTATTGGAGAACATAAGAATAGTGAATGACAGAGAAACCACCAAATTGTGACTATAGTCCTGTGGGATGTTCCAATCTATTTATACATGCCTGAGAAATCAGAATAATGGAGTAAATATGAGCTAATAATGAGTTTTTACTTTGTTTCTGACATGTCAAATATATTGTGCTCCTGCGTATGTAGAGCATTGAGAATGCACCTGGTTTAGAAGAGTTGCTACCTCCCAAGGGTGGACCAAGCTTCAAATTTTCCGCAGAAGATGATGGAGAGAAAAGTGAACAACATGCACTTTCTGCTGAATTATACAATATGGTGAAAGGACGAGCTCCAGCACGTGAACTCATTTCATGGTTGGATGAAAGTGTAATTCCGAAGCATGGTTTAGATGTTTCTCTCGTCGTGGTCGTGCAAACTCTTCTGGATATTGGGTCAAAGAGTTTCACTCATTTGATAACAGTCTTGGAGAGATATGGACAAGTTATTTCAAGAATATGCCATGATCAGGATAAGCAGGTCTTGCTTATATCTGAAGTGGGATCTTACTGGAAGAATAATACTCAAATGACGGCAATAGCAATTGATAGAATGATGGGCTATAGGTTAATTTCCAATTTGTCCATCGTTAAATGGATCTTTTCTCCAGAAAATCTTCAGCAATATCATACATCAGATCGTCCATGGGAGGTACATTTTGCATTTTTTTTGGCTACTTCACGGAAGAGACATTGTTATTTCTTTTGAATTTGACATGAATCACATGACCTACTTTAGGTGTTTTCTTCATCATTTCTGGGCTAAGTGATGGTAGCTATTGCATTATGATCTCACATTTGTGATTAATATTTTTAGAACTCAAGGATACAAATGTACAACCTATAGAACAGATCCTATTCAAGTAACGTCGTTACATTTGTGATTAATCATATTGCTTAGATATAACTTGAATGTAAAAAAGAAAAATAAAGTCACGAGAATTTCATCCTGCCTTATAAACCCTTTATCCAGCTGAAGGCTGAAAAATAATTTACAATGTTTTAACTGATATATCTGGTTAAAAGAAAAGTTTACCATCAGTTGTGGTCATCTCTTTCTGAGGAGCATGATTAGAAGAAATTTACATTGTTTACCGTTTCTTGGAATAGAGTCTATGTGTGTGTGTGTCTGCTTTTTTCCTTCAGTAAATAAATTACAAATGAGCAGGGATATGCTTGTCTTGATATATTCATCTCTTTCAAATTTCATTCTTCTTTTTTTTTTCGTTTTATACTTCTTAATAGATTGATAAGTTATGGCTTATTTATTATACTTCCTGTAATTTATTTTCTTTGTTTCCTGAAAACTCATTCTCATTTTATGTTCGATTGGTAACTTGTGTTTCCAGGTTTGCTGCCCGTGCCACTTGTTTCTATTTAATCCATGTTTTTTCTTTTTTGAATTTTTTTCTCTAAATTTTAGTTTCAATTCCTTCAATCTTCAATACAAGTTTGAAGGTTTTCTTGGATTCCATGGCATAAATATCCACTGTATTTTTTAGACTTTTAAACTACATAACCTGCTATGGACATGATTATTCATTATATCTTACCGAAGTATATCTACTTTGTTCATGGGCAGTCGCACCTAAATTTTACTGATAATTTCATTAAACGACTTCAAGTTCCTTCTGGAATGGAAATAAGTTGCAACTAATTTTCTCTTATTATCTCCTGTACAGATATTAAGGAATGCGTTATGCAAGACGTATAATCGTATTTCTGATCTTAGAAAAGAAATATCCTCCCTGAAGAAAGACGTTGTTGCAGCTGAAGAAGCTGTTGCTAGGACACAGGAAGAATTGGGTGCTGCTGAATCAAAGCTCTCACTTGTGGATGGTGAACCTGTTTTGGGAGAGAATCCTGTGAGATTGAAGCGATTGAAATCTTATGCTGGAAGAGCAAAAGAGCAGGAGATATCGATACGGGACTCTTTAGAAGCCAAAGAAGCTCTTCTTGCTCGAGCTCTCGAGGAGAATGAGGTATTAATTACGAAAGTAGAAATAATTGCACCTTTTCCATTAAACCTGAGCCAATATTGATGTTGGTATTCTCGATCTTCTGTTGCTTTTACCGTTGAATTATCAACTTTAACAGTACGTCTTTCCAATTCTAACTAATCTTTTCCACTTGCAGATATTATTTCTATCTTTGTACAAAAGTTTTTCCAGTATATTGACAGAACGCCTTCCAGCTAGTGCGCAAACTCTGCAGGATTTGAAGTCTACTAATCCTGCTGATACGAATGCTATGGATGTTGAAGAACCATCAGCCATGGAGATGGACAATGTAGAGTCAAGACCTGAAAAAAGGTTTTCTACATCAAGAGGACAATGATCCGATGTCTTTTTGCCCAATTTTCAATTCATGATCGTTTCCATTTCCTTTAATCTCAATTATAAATTTACCGTGTTCTCTTTATTTTGCAGTCATTTGAATGGTAGAACAGAGCATGCCTACACGGTATGTGAAAATGAACAATGGTGTTTAACCACCTTGGGATATGTCAAGGCCTTCTCGAGGCAATATGCTTCCGAGGTATTTTTCTTTCCTACGGTACCATACTTCAGGACTGCCAATCATGAAAACTAAAAATGATTCAAAAAAAATTTATGATTAATATCTGAAACGATCAGAATAACATGCAGCAACCTGAACGCTCTTTCTTACTCGAACCATTTTCATTGTGTGATGTGCTCAGATATGGCCTCATATTGAGAAGTTGGATGCGGAAATCTTGTTATCAGAAGATTCACACCCACTTTTCAGGAAAGCTGTCTACAGTGGCCTTCGTCGATCTTTGGACTTGATCTAACGACACAATCATATTTATTACAGTATTCAACATTTCTATTTTTTTTCCTTCAATCCTTTTCCTTTTTCTTTTTGTAGATTAGGTGGATAGATCACTCGGTTATGTTATGTAACATTTGGGTAAACGAAACATACATGTTAGGGTGGCCAATCGCTGTAGGCCAGTTTAATTGTACTTGTCGTCATGTTCATGGATGCCCTGTATCATAATATCTATATCCTAATTGTTCTTGTTCTACAACTATTTATTCTGTATGAAATGACAAATTTCTTAA

mRNA sequence

CCCCACAAAGAGTGTTTGTGAAGGAGGTTCTGGATCGAGAGGTCCGTCTATCATATTGGGATAAAGTAAAGCAGAGCATTGAGAATGCACCTGGTTTAGAAGAGTTGCTACCTCCCAAGGGTGGACCAAGCTTCAAATTTTCCGCAGAAGATGATGGAGAGAAAAGTGAACAACATGCACTTTCTGCTGAATTATACAATATGGTGAAAGGACGAGCTCCAGCACGTGAACTCATTTCATGGTTGGATGAAAGTGTAATTCCGAAGCATGGTTTAGATGTTTCTCTCGTCGTGGTCGTGCAAACTCTTCTGGATATTGGGTCAAAGAGTTTCACTCATTTGATAACAGTCTTGGAGAGATATGGACAAGTTATTTCAAGAATATGCCATGATCAGGATAAGCAGGTCTTGCTTATATCTGAAGTGGGATCTTACTGGAAGAATAATACTCAAATGACGGCAATAGCAATTGATAGAATGATGGGCTATAGGTTAATTTCCAATTTGTCCATCGTTAAATGGATCTTTTCTCCAGAAAATCTTCAGCAATATCATACATCAGATCGTCCATGGGAGATATTAAGGAATGCGTTATGCAAGACGTATAATCGTATTTCTGATCTTAGAAAAGAAATATCCTCCCTGAAGAAAGACGTTGTTGCAGCTGAAGAAGCTGTTGCTAGGACACAGGAAGAATTGGGTGCTGCTGAATCAAAGCTCTCACTTGTGGATGGTGAACCTGTTTTGGGAGAGAATCCTGTGAGATTGAAGCGATTGAAATCTTATGCTGGAAGAGCAAAAGAGCAGGAGATATCGATACGGGACTCTTTAGAAGCCAAAGAAGCTCTTCTTGCTCGAGCTCTCGAGGAGAATGAGATATTATTTCTATCTTTGTACAAAAGTTTTTCCAGTATATTGACAGAACGCCTTCCAGCTAGTGCGCAAACTCTGCAGGATTTGAAGTCTACTAATCCTGCTGATACGAATGCTATGGATGTTGAAGAACCATCAGCCATGGAGATGGACAATGTAGAGTCAAGACCTGAAAAAAGTCATTTGAATGGTAGAACAGAGCATGCCTACACGGTATGTGAAAATGAACAATGGTGTTTAACCACCTTGGGATATGTCAAGGCCTTCTCGAGGCAATATGCTTCCGAGATATGGCCTCATATTGAGAAGTTGGATGCGGAAATCTTGTTATCAGAAGATTCACACCCACTTTTCAGGAAAGCTGTCTACAGTGGCCTTCGTCGATCTTTGGACTTGATCTAACGACACAATCATATTTATTACAGTATTCAACATTTCTATTTTTTTTCCTTCAATCCTTTTCCTTTTTCTTTTTGTAGATTAGGTGGATAGATCACTCGGTTATGTTATGTAACATTTGGGTAAACGAAACATACATGTTAGGGTGGCCAATCGCTGTAGGCCAGTTTAATTGTACTTGTCGTCATGTTCATGGATGCCCTGTATCATAATATCTATATCCTAATTGTTCTTGTTCTACAACTATTTATTCTGTATGAAATGACAAATTTCTTAA

Coding sequence (CDS)

ATGGTGAAAGGACGAGCTCCAGCACGTGAACTCATTTCATGGTTGGATGAAAGTGTAATTCCGAAGCATGGTTTAGATGTTTCTCTCGTCGTGGTCGTGCAAACTCTTCTGGATATTGGGTCAAAGAGTTTCACTCATTTGATAACAGTCTTGGAGAGATATGGACAAGTTATTTCAAGAATATGCCATGATCAGGATAAGCAGGTCTTGCTTATATCTGAAGTGGGATCTTACTGGAAGAATAATACTCAAATGACGGCAATAGCAATTGATAGAATGATGGGCTATAGGTTAATTTCCAATTTGTCCATCGTTAAATGGATCTTTTCTCCAGAAAATCTTCAGCAATATCATACATCAGATCGTCCATGGGAGATATTAAGGAATGCGTTATGCAAGACGTATAATCGTATTTCTGATCTTAGAAAAGAAATATCCTCCCTGAAGAAAGACGTTGTTGCAGCTGAAGAAGCTGTTGCTAGGACACAGGAAGAATTGGGTGCTGCTGAATCAAAGCTCTCACTTGTGGATGGTGAACCTGTTTTGGGAGAGAATCCTGTGAGATTGAAGCGATTGAAATCTTATGCTGGAAGAGCAAAAGAGCAGGAGATATCGATACGGGACTCTTTAGAAGCCAAAGAAGCTCTTCTTGCTCGAGCTCTCGAGGAGAATGAGATATTATTTCTATCTTTGTACAAAAGTTTTTCCAGTATATTGACAGAACGCCTTCCAGCTAGTGCGCAAACTCTGCAGGATTTGAAGTCTACTAATCCTGCTGATACGAATGCTATGGATGTTGAAGAACCATCAGCCATGGAGATGGACAATGTAGAGTCAAGACCTGAAAAAAGTCATTTGAATGGTAGAACAGAGCATGCCTACACGGTATGTGAAAATGAACAATGGTGTTTAACCACCTTGGGATATGTCAAGGCCTTCTCGAGGCAATATGCTTCCGAGATATGGCCTCATATTGAGAAGTTGGATGCGGAAATCTTGTTATCAGAAGATTCACACCCACTTTTCAGGAAAGCTGTCTACAGTGGCCTTCGTCGATCTTTGGACTTGATCTAA
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015174MIF4G-like_typ-2
IPR016021MIF4-like_sf
IPR016024ARM-type_fold
IPR027159CBP80
Vocabulary: Biological Process
TermDefinition
GO:0016070RNA metabolic process
GO:0045292mRNA cis splicing, via spliceosome
GO:0051028mRNA transport
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0000339RNA cap binding
Vocabulary: Cellular Component
TermDefinition
GO:0005846nuclear cap binding complex
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006342 chromatin silencing
biological_process GO:0031053 primary miRNA processing
biological_process GO:0016070 RNA metabolic process
biological_process GO:0006366 transcription from RNA polymerase II promoter
biological_process GO:0010182 sugar mediated signaling pathway
biological_process GO:0009845 seed germination
biological_process GO:0010162 seed dormancy process
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0050826 response to freezing
biological_process GO:0009737 response to abscisic acid
biological_process GO:0009909 regulation of flower development
biological_process GO:0000911 cytokinesis by cell plate formation
biological_process GO:0016567 protein ubiquitination
biological_process GO:0009640 photomorphogenesis
biological_process GO:0051028 mRNA transport
biological_process GO:0045292 mRNA cis splicing, via spliceosome
biological_process GO:0000226 microtubule cytoskeleton organization
biological_process GO:0009086 methionine biosynthetic process
biological_process GO:0009933 meristem structural organization
biological_process GO:0048574 long-day photoperiodism, flowering
biological_process GO:0019915 lipid storage
biological_process GO:0051567 histone H3-K9 methylation
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0006306 DNA methylation
cellular_component GO:0005846 nuclear cap binding complex
cellular_component GO:0005634 nucleus
molecular_function GO:0000339 RNA cap binding
molecular_function GO:0005488 binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C015158T2MELO3C015158T2mRNA
MELO3C015158T1MELO3C015158T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015174MIF4G-like, type 2PFAMPF09090MIF4G_like_2coord: 8..319
score: 2.0
IPR016021MIF4G-like domainGENE3DG3DSA:1.25.40.180coord: 222..256
score: 5.2E-71coord: 1..141
score: 5.2E-71coord: 297..345
score: 5.2
IPR016024Armadillo-type foldunknownSSF48371ARM repeatcoord: 289..346
score: 2.88E-56coord: 203..245
score: 2.88E-56coord: 1..156
score: 2.88
IPR027159Nuclear cap-binding protein subunit 1PANTHERPTHR12412CAP BINDING PROTEINcoord: 297..355
score: 2.0E-90coord: 1..270
score: 2.0
NoneNo IPR availableunknownCoilCoilcoord: 138..172
scor