MELO3C015128 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C015128
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Polygalacturonase
Location	chr2 : 6784481 .. 6785614 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGGAGTGAGGATTAAATCTTGGGGAAGGCCCAGCAATGGGTTTGCAAAGAACATTCTTTTTCAACACATTGTTTTTGACAATGTCAACAACCCTCTCATCATTGATCAAAATTACTGCCCACATAACCAAGGCTGCCCCGGTCAGGTAACCATTTCCTCATTCATTCCGATCATAAATGTTCAAACCATATATCAAAAGAAATTTAATGCATTCTTTAATTCTTTATCAAATTCTTAAATCATAATTTTTTGGTGAAAATTTTTTATTTTTCTTATTTAAATATTTTGTTTATGTTAGAGGTAACATACATGATAGTGCATAAACATATCGGATCCAAGTATTACTTATATATATTATATATATGTATGAATGTATGGTGTTAATTTTTAAAAAAAAATCACGTGTTAAGAAATATAATATATAATTGTACAAAATTATAAATGTAATTAACTACTCGTCTTTAAATTTAGATGTTTATGGACTTTATTATACGTTATAAAAGTTTTCAAAAACTGAATTGTAACTCAACTTTATTTTATGCTTCAAAGTTTCCATTCAAGATTATTTCAAGATATTAAAAACAATTCCACCTCATGTAATAGTAATTACTTTTACTACATAACTTCAAAATTAGTTGTTTACTATAATTTGCTTCAAAGTTTTTTTGGAGATTTCATTTTCTTTCTTTCTTTTCCATCGTTATTATTTCAAACTGTTGTAACAGTAATATATATACATATAATATGAATATATTAGGCTTCTGGAGTAAAGATTAGTAATGTAAGATATGAAGACATCCATGGAACGTCAGCTACTGAAGTAGGTATAAACTTTGAGTGTAGCCCTGCAAGGCCATGCAACGAAATAAGATTGAAAGATGTAAAGTTGATATTCAAGGATCAAATTGCCCAAGCATCGTGTGAATATGCAACAGGAACTACCTTGGGTCTAGTTCAACCTTCTAATTGCTTAGTATAGCAAATGTAATTCACTTTAGGTTCAACAATATCAGTATTGGGCATTGAATGTAATTTCATATCTAGAATTGGAAAGATGTAAGGTGTTAGAATCAATTCCTCACTATATTCATTTTGACCAAAATAAGCTTTAAAATAATATATGAGGTCT

mRNA sequence

ATGAATGGAGTGAGGATTAAATCTTGGGGAAGGCCCAGCAATGGGTTTGCAAAGAACATTCTTTTTCAACACATTGTTTTTGACAATGTCAACAACCCTCTCATCATTGATCAAAATTACTGCCCACATAACCAAGGCTGCCCCGGTCAGGCTTCTGGAGTAAAGATTAGTAATGTAAGATATGAAGACATCCATGGAACGTCAGCTACTGAAGTAGGTATAAACTTTGAGTGTAGCCCTGCAAGGCCATGCAACGAAATAAGATTGAAAGATGTAAAGTTGATATTCAAGGATCAAATTGCCCAAGCATCGTGTGAATATGCAACAGGAACTACCTTGGGTCTAGTTCAACCTTCTAATTGCTTAGTATAGCAAATGTAATTCACTTTAGGTTCAACAATATCAGTATTGGGCATTGAATGTAATTTCATATCTAGAATTGGAAAGATGTAAGGTGTTAGAATCAATTCCTCACTATATTCATTTTGACCAAAATAAGCTTTAAAATAATATATGAGGTCT

Coding sequence (CDS)

ATGAATGGAGTGAGGATTAAATCTTGGGGAAGGCCCAGCAATGGGTTTGCAAAGAACATTCTTTTTCAACACATTGTTTTTGACAATGTCAACAACCCTCTCATCATTGATCAAAATTACTGCCCACATAACCAAGGCTGCCCCGGTCAGGCTTCTGGAGTAAAGATTAGTAATGTAAGATATGAAGACATCCATGGAACGTCAGCTACTGAAGTAGGTATAAACTTTGAGTGTAGCCCTGCAAGGCCATGCAACGAAATAAGATTGAAAGATGTAAAGTTGATATTCAAGGATCAAATTGCCCAAGCATCGTGTGAATATGCAACAGGAACTACCTTGGGTCTAGTTCAACCTTCTAATTGCTTAGTATAG

Protein sequence

MNGVRIKSWGRPSNGFAKNILFQHIVFDNVNNPLIIDQNYCPHNQGCPGQASGVKISNVRYEDIHGTSATEVGINFECSPARPCNEIRLKDVKLIFKDQIAQASCEYATGTTLGLVQPSNCLV*

Homology

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BLAST of MELO3C015128 vs. Swiss-Prot
Match: PGLR_PRUPE (Polygalacturonase OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 6.4e-47
Identity = 82/121 (67.77%), Postives = 100/121 (82.64%), Query Frame = 1


Query: 2   NGVRIKSWGRPSNGFAKNILFQHIVFDNVNNPLIIDQNYCPHNQGCPGQASGVKISNVRY 61
           NG+RIKSWGRPS GFA+NILFQH    NV NP++IDQ+YCP N+GCPGQ SGV+IS+V Y
Sbjct: 273 NGLRIKSWGRPSTGFARNILFQHATMVNVENPIVIDQHYCPDNKGCPGQVSGVQISDVTY 332

Query: 62  EDIHGTSATEVGINFECSPARPCNEIRLKDVKLIFKDQIAQASCEYATGTTLGLVQPSNC 121
           EDIHGTSATEV + F+CSP  PC EI+L+DVKL +K+Q A++SC +A GTT G+VQP++C
Sbjct: 333 EDIHGTSATEVAVKFDCSPKHPCREIKLEDVKLTYKNQAAESSCSHADGTTEGVVQPTSC 392

Query: 122 L 123
           L
Sbjct: 393 L 393

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BLAST of MELO3C015128 vs. Swiss-Prot
Match: PGLR6_ARATH (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 4.4e-32
Identity = 68/121 (56.20%), Postives = 83/121 (68.60%), Query Frame = 1


Query: 2   NGVRIKSWGRPSNGFAKNILFQHIVFDNVNNPLIIDQNYCPHNQGCPGQASGVKISNVRY 61
           NGVRIK+WG+ SN FA+NI+FQHI    V NP+IIDQ+YC H   CP Q SGVK+SNVRY
Sbjct: 279 NGVRIKTWGKDSNSFARNIVFQHINMKMVKNPIIIDQHYCLHKP-CPKQESGVKVSNVRY 338

Query: 62  EDIHGTSATEVGINFECSPARPCNEIRLKDVKLIFKDQIAQASCEYATGTTLGLVQPSNC 121
           EDIHGTS TEV +  +CS  +PC  I + DV L+   + AQASC+ A G+   +V  + C
Sbjct: 339 EDIHGTSNTEVAVLLDCSKEKPCTGIVMDDVNLVSVHRPAQASCDNANGSANDVVPFTPC 398

Query: 122 L 123
           L
Sbjct: 399 L 398

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BLAST of MELO3C015128 vs. Swiss-Prot
Match: QRT2_ARATH (Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2)

HSP 1 Score: 108.6 bits (270), Expect = 4.9e-23
Identity = 54/119 (45.38%), Postives = 76/119 (63.87%), Query Frame = 1


Query: 2   NGVRIKSWGRPSNGFAKNILFQHIVFDNVNNPLIIDQNYCPHNQGCPGQASGVKISNVRY 61
           NGVRIK+W +  +G AKNI+FQ I+  NV NP+II+Q+YC   + CP Q S V++SNV Y
Sbjct: 319 NGVRIKTW-QGGHGMAKNIIFQDIIMKNVTNPIIINQDYCDRVEACPEQKSAVQVSNVLY 378

Query: 62  EDIHGTSATEVGINFECSPARPCNEIRLKDVKLIFKDQ--IAQASCEYATGTTLGLVQP 119
           ++I GTS+  + + F CS   PC  I +++VKL+ + Q  +++ASC      T G V P
Sbjct: 379 KNIQGTSSRPIAVKFVCSKNIPCRGISMQNVKLVDQTQQDVSKASCSNVKLDTRGNVSP 436

[Close]

BLAST of MELO3C015128 vs. Swiss-Prot
Match: PGLR_PERAE (Polygalacturonase OS=Persea americana PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.0e-20
Identity = 48/94 (51.06%), Postives = 62/94 (65.96%), Query Frame = 1


Query: 2   NGVRIKSWGRPSNGFAKNILFQHIVFDNVNNPLIIDQNYCPHNQGCPGQASGVKISNVRY 61
           NG+RIK+W +  +G AKNI FQ+IV  NV NP+IIDQ YC     CP Q S VK+SNV Y
Sbjct: 332 NGLRIKTW-QGGSGSAKNIKFQNIVMHNVTNPIIIDQYYCDSKDPCPEQESAVKVSNVAY 391

Query: 62  EDIHGTSATEVGINFECSPARPCNEIRLKDVKLI 96
            +I GTSA+EV + F+CS + PC    + ++ L+
Sbjct: 392 MNIRGTSASEVAVKFDCSKSSPCQGYIVGNINLV 424

[Close]

BLAST of MELO3C015128 vs. Swiss-Prot
Match: PGLR_ACTDE (Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.3e-20
Identity = 54/118 (45.76%), Postives = 71/118 (60.17%), Query Frame = 1


Query: 2   NGVRIKSWGRPSNGFAKNILFQHIVFDNVNNPLIIDQNYCPHNQGCPGQASGVKISNVRY 61
           NGVRIK+W +  +G A NI FQ++   NV NP+IIDQNYC  ++ C  Q+S V++ NV Y
Sbjct: 337 NGVRIKTW-QGGSGSASNIKFQNVEMHNVENPIIIDQNYCDQDKPCQEQSSAVQVKNVVY 396

Query: 62  EDIHGTSATEVGINFECSPARPCNEIRLKDVKL-IFKDQIAQASCEYATGTTLGLVQP 119
           ++I GT A+ V I F+CS   PC  I L+DV L I     A+A C     +  G+V P
Sbjct: 397 QNIKGTCASNVAITFDCSKRFPCQGIVLEDVDLEIEGGAAAKALCNNVELSETGVVSP 453

[Close]

BLAST of MELO3C015128 vs. TrEMBL
Match: A4UQV4_CUCME (Polygalacturonase OS=Cucumis melo GN=MPG PE=2 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 2.5e-66
Identity = 122/123 (99.19%), Postives = 123/123 (100.00%), Query Frame = 1


Query: 1   MNGVRIKSWGRPSNGFAKNILFQHIVFDNVNNPLIIDQNYCPHNQGCPGQASGVKISNVR 60
           MNGVRIKSWGRPSNGFAKNILFQHIVFDNVNNPLIIDQNYCPHNQGCPGQASGVKISNVR
Sbjct: 271 MNGVRIKSWGRPSNGFAKNILFQHIVFDNVNNPLIIDQNYCPHNQGCPGQASGVKISNVR 330

Query: 61  YEDIHGTSATEVGINFECSPARPCNEIRLKDVKLIFKDQIAQASCEYATGTTLGLVQPSN 120
           YEDIHGTSATEVGINFECSPARPCNEIRLKDVKLIFKDQIAQASCEYATGTTLGLVQPSN
Sbjct: 331 YEDIHGTSATEVGINFECSPARPCNEIRLKDVKLIFKDQIAQASCEYATGTTLGLVQPSN 390

Query: 121 CLV 124
           CL+
Sbjct: 391 CLL 393

[Close]

BLAST of MELO3C015128 vs. TrEMBL
Match: O81244_CUCME (Polygalacturonase OS=Cucumis melo GN=MPG1 PE=2 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 7.3e-66
Identity = 121/123 (98.37%), Postives = 123/123 (100.00%), Query Frame = 1


Query: 1   MNGVRIKSWGRPSNGFAKNILFQHIVFDNVNNPLIIDQNYCPHNQGCPGQASGVKISNVR 60
           MNGVRIKSWGRPSNGFAKNILF+HIVFDNVNNPLIIDQNYCPHNQGCPGQASGVKISNVR
Sbjct: 271 MNGVRIKSWGRPSNGFAKNILFKHIVFDNVNNPLIIDQNYCPHNQGCPGQASGVKISNVR 330

Query: 61  YEDIHGTSATEVGINFECSPARPCNEIRLKDVKLIFKDQIAQASCEYATGTTLGLVQPSN 120
           YEDIHGTSATEVGINFECSPARPCNEIRLKDVKLIFKDQIAQASCEYATGTTLGLVQPSN
Sbjct: 331 YEDIHGTSATEVGINFECSPARPCNEIRLKDVKLIFKDQIAQASCEYATGTTLGLVQPSN 390

Query: 121 CLV 124
           CL+
Sbjct: 391 CLL 393

[Close]

BLAST of MELO3C015128 vs. TrEMBL
Match: A0A0A0LXR8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G627470 PE=3 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 6.0e-60
Identity = 113/123 (91.87%), Postives = 116/123 (94.31%), Query Frame = 1


Query: 1   MNGVRIKSWGRPSNGFAKNILFQHIVFDNVNNPLIIDQNYCPHNQGCPGQASGVKISNVR 60
           MNGVRIKSWGRPSNG AKNILFQHIV DNV NPLIIDQNYCPHNQGCP QASGVKISNV 
Sbjct: 271 MNGVRIKSWGRPSNGSAKNILFQHIVLDNVTNPLIIDQNYCPHNQGCPNQASGVKISNVT 330

Query: 61  YEDIHGTSATEVGINFECSPARPCNEIRLKDVKLIFKDQIAQASCEYATGTTLGLVQPSN 120
           Y+DI GTSATEVGINFECSPARPCN+IRL+DVKLIFKDQIAQA CEYATGTTLGLVQPSN
Sbjct: 331 YKDIRGTSATEVGINFECSPARPCNQIRLEDVKLIFKDQIAQAWCEYATGTTLGLVQPSN 390

Query: 121 CLV 124
           CLV
Sbjct: 391 CLV 393

[Close]

BLAST of MELO3C015128 vs. TrEMBL
Match: A0A059AUR6_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_H00254 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 8.4e-46
Identity = 83/121 (68.60%), Postives = 102/121 (84.30%), Query Frame = 1


Query: 2   NGVRIKSWGRPSNGFAKNILFQHIVFDNVNNPLIIDQNYCPHNQGCPGQASGVKISNVRY 61
           NGVRIKSWGRPSNGFA+NILFQH + +NV NP+IIDQNYCPHN GCPGQASGV++S+V Y
Sbjct: 246 NGVRIKSWGRPSNGFARNILFQHAIMNNVQNPIIIDQNYCPHNSGCPGQASGVRVSDVTY 305

Query: 62  EDIHGTSATEVGINFECSPARPCNEIRLKDVKLIFKDQIAQASCEYATGTTLGLVQPSNC 121
           +DIHGTSAT V + F+CS   PC  IR++DVKL +++++A ASC +A GT  GLVQPS+C
Sbjct: 306 QDIHGTSATSVAVKFDCSSKYPCTGIRMQDVKLTYRNKVATASCAHADGTASGLVQPSSC 365

Query: 122 L 123
           L
Sbjct: 366 L 366

[Close]

BLAST of MELO3C015128 vs. TrEMBL
Match: W9RN73_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020358 PE=3 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.4e-45
Identity = 85/121 (70.25%), Postives = 101/121 (83.47%), Query Frame = 1


Query: 2   NGVRIKSWGRPSNGFAKNILFQHIVFDNVNNPLIIDQNYCPHNQGCPGQASGVKISNVRY 61
           NG+RIKSWGRPS+GFA+NILFQH V  NV NP++IDQNYCP N+GCPGQ SGVK+S+V Y
Sbjct: 282 NGLRIKSWGRPSSGFARNILFQHAVMTNVQNPIVIDQNYCPDNKGCPGQVSGVKVSDVTY 341

Query: 62  EDIHGTSATEVGINFECSPARPCNEIRLKDVKLIFKDQIAQASCEYATGTTLGLVQPSNC 121
           +DIHGTSATEV + F+CS   PCN IRL+DVKL +K+  AQASC +A GT  GLVQPS+C
Sbjct: 342 QDIHGTSATEVAVKFDCSSKYPCNNIRLQDVKLTYKNLPAQASCNHAAGTASGLVQPSSC 401

Query: 122 L 123
           L
Sbjct: 402 L 402

[Close]

BLAST of MELO3C015128 vs. TAIR10
Match: AT3G59850.1 (AT3G59850.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 166.0 bits (419), Expect = 1.5e-41
Identity = 72/121 (59.50%), Postives = 91/121 (75.21%), Query Frame = 1


Query: 2   NGVRIKSWGRPSNGFAKNILFQHIVFDNVNNPLIIDQNYCPHNQGCPGQASGVKISNVRY 61
           NGVRIKSW RPSNGFAKNI FQH V +NV NP++IDQNYCP N+ CP Q SG+KIS+V +
Sbjct: 268 NGVRIKSWARPSNGFAKNIRFQHCVMNNVQNPIVIDQNYCPGNENCPNQVSGIKISDVMF 327

Query: 62  EDIHGTSATEVGINFECSPARPCNEIRLKDVKLIFKDQIAQASCEYATGTTLGLVQPSNC 121
            DIHGTSATEVG+  +CS  +PC  IR++DVKL ++++ A   C +A G+  G  +P++C
Sbjct: 328 FDIHGTSATEVGVKLDCSSKKPCTGIRIQDVKLTYRNKPATTDCSHAGGSEAGFQRPNSC 387

Query: 122 L 123
           L
Sbjct: 388 L 388

[Close]

BLAST of MELO3C015128 vs. TAIR10
Match: AT2G43870.1 (AT2G43870.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 155.6 bits (392), Expect = 2.0e-38
Identity = 74/121 (61.16%), Postives = 90/121 (74.38%), Query Frame = 1


Query: 2   NGVRIKSWGRPSNGFAKNILFQHIVFDNVNNPLIIDQNYCPHNQGCPGQASGVKISNVRY 61
           NGVRIKSW RPS+GFAKNI FQH V +NV NP+IIDQNYCP +  CP Q SG+KIS+V +
Sbjct: 266 NGVRIKSWARPSSGFAKNIRFQHCVMNNVENPIIIDQNYCPDHD-CPRQVSGIKISDVLF 325

Query: 62  EDIHGTSATEVGINFECSPARPCNEIRLKDVKLIFKDQIAQASCEYATGTTLGLVQPSNC 121
            DIHGTSATEVG+  +CS  +PC  IRL+DVKL ++++ A ++C +A G   G  QP NC
Sbjct: 326 VDIHGTSATEVGVKLDCSSKKPCTGIRLEDVKLTYQNKPAASACTHAGGIEAGFFQP-NC 384

Query: 122 L 123
           L
Sbjct: 386 L 384

[Close]

BLAST of MELO3C015128 vs. TAIR10
Match: AT2G43890.1 (AT2G43890.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 149.1 bits (375), Expect = 1.9e-36
Identity = 65/121 (53.72%), Postives = 82/121 (67.77%), Query Frame = 1


Query: 2   NGVRIKSWGRPSNGFAKNILFQHIVFDNVNNPLIIDQNYCPHNQGCPGQASGVKISNVRY 61
           NGVRIK+W R S GF +N+LFQ+++  NV NP+I+DQNYCP NQGCP Q SGVKIS V Y
Sbjct: 272 NGVRIKTWARQSTGFVRNVLFQNLIMKNVQNPIIVDQNYCPSNQGCPKQGSGVKISQVVY 331

Query: 62  EDIHGTSATEVGINFECSPARPCNEIRLKDVKLIFKDQIAQASCEYATGTTLGLVQPSNC 121
            +I GTS T+  + F+CS + PC  IRL D+KL F  + A ++C+   G   G+V P  C
Sbjct: 332 RNIQGTSRTQQALTFDCSRSNPCQAIRLHDIKLTFNGRSATSTCKNIKGVKAGVVMPQGC 391

Query: 122 L 123
           L
Sbjct: 392 L 392

[Close]

BLAST of MELO3C015128 vs. TAIR10
Match: AT1G05650.1 (AT1G05650.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 144.8 bits (364), Expect = 3.5e-35
Identity = 66/122 (54.10%), Postives = 85/122 (69.67%), Query Frame = 1


Query: 2   NGVRIKSWGRPSNGFAKNILFQHIVFDNVNNPLIIDQNYCPHNQGCPGQASGVKISNVRY 61
           NGVRIKSW RPS GF +N+ FQ+++  NV NP+IIDQNYCP NQGCP + SGVKI+ V Y
Sbjct: 271 NGVRIKSWARPSTGFVRNVFFQNLIMRNVQNPIIIDQNYCPSNQGCPTEHSGVKITQVTY 330

Query: 62  EDIHGTSATEVGINFECSPARPCNEIRLKDVKLIF-KDQIAQASCEYATGTTLGLVQPSN 121
           ++I GTSAT+  +   CS + PC  I L+D+KL + K   A + C  A G  LG++QP++
Sbjct: 331 KNIQGTSATQEAMKLVCSKSNPCTGITLQDIKLTYNKGTPATSLCFNAVGKNLGVIQPTS 390

Query: 122 CL 123
           CL
Sbjct: 391 CL 392

[Close]

BLAST of MELO3C015128 vs. TAIR10
Match: AT1G05660.1 (AT1G05660.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 143.3 bits (360), Expect = 1.0e-34
Identity = 66/122 (54.10%), Postives = 85/122 (69.67%), Query Frame = 1


Query: 2   NGVRIKSWGRPSNGFAKNILFQHIVFDNVNNPLIIDQNYCPHNQGCPGQASGVKISNVRY 61
           NGVRIKSW RPSNGF + + FQ +V  NV NP+IIDQNYCP ++GCP + SGVKIS V Y
Sbjct: 271 NGVRIKSWARPSNGFVRTVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTY 330

Query: 62  EDIHGTSATEVGINFECSPARPCNEIRLKDVKLIF-KDQIAQASCEYATGTTLGLVQPSN 121
           ++I GTSAT+  +   CS + PC  I L+D+KL + K   A + C  A G +LG++QP++
Sbjct: 331 KNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKGTPATSFCFNAVGKSLGVIQPTS 390

Query: 122 CL 123
           CL
Sbjct: 391 CL 392

[Close]

BLAST of MELO3C015128 vs. NCBI nr
Match: gi|659098912|ref|XP_008450348.1| (PREDICTED: polygalacturonase-like [Cucumis melo])

HSP 1 Score: 260.4 bits (664), Expect = 1.6e-66
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1


Query: 1   MNGVRIKSWGRPSNGFAKNILFQHIVFDNVNNPLIIDQNYCPHNQGCPGQASGVKISNVR 60
           MNGVRIKSWGRPSNGFAKNILFQHIVFDNVNNPLIIDQNYCPHNQGCPGQASGVKISNVR
Sbjct: 1   MNGVRIKSWGRPSNGFAKNILFQHIVFDNVNNPLIIDQNYCPHNQGCPGQASGVKISNVR 60

Query: 61  YEDIHGTSATEVGINFECSPARPCNEIRLKDVKLIFKDQIAQASCEYATGTTLGLVQPSN 120
           YEDIHGTSATEVGINFECSPARPCNEIRLKDVKLIFKDQIAQASCEYATGTTLGLVQPSN
Sbjct: 61  YEDIHGTSATEVGINFECSPARPCNEIRLKDVKLIFKDQIAQASCEYATGTTLGLVQPSN 120

Query: 121 CLV 124
           CLV
Sbjct: 121 CLV 123

[Close]

BLAST of MELO3C015128 vs. NCBI nr
Match: gi|134305344|gb|ABO71786.1| (polygalacturonase [Cucumis melo])

HSP 1 Score: 259.2 bits (661), Expect = 3.6e-66
Identity = 122/123 (99.19%), Postives = 123/123 (100.00%), Query Frame = 1


Query: 1   MNGVRIKSWGRPSNGFAKNILFQHIVFDNVNNPLIIDQNYCPHNQGCPGQASGVKISNVR 60
           MNGVRIKSWGRPSNGFAKNILFQHIVFDNVNNPLIIDQNYCPHNQGCPGQASGVKISNVR
Sbjct: 271 MNGVRIKSWGRPSNGFAKNILFQHIVFDNVNNPLIIDQNYCPHNQGCPGQASGVKISNVR 330

Query: 61  YEDIHGTSATEVGINFECSPARPCNEIRLKDVKLIFKDQIAQASCEYATGTTLGLVQPSN 120
           YEDIHGTSATEVGINFECSPARPCNEIRLKDVKLIFKDQIAQASCEYATGTTLGLVQPSN
Sbjct: 331 YEDIHGTSATEVGINFECSPARPCNEIRLKDVKLIFKDQIAQASCEYATGTTLGLVQPSN 390

Query: 121 CLV 124
           CL+
Sbjct: 391 CLL 393

[Close]

BLAST of MELO3C015128 vs. NCBI nr
Match: gi|3320458|gb|AAC26510.1| (polygalacturonase precursor [Cucumis melo])

HSP 1 Score: 257.7 bits (657), Expect = 1.0e-65
Identity = 121/123 (98.37%), Postives = 123/123 (100.00%), Query Frame = 1


Query: 1   MNGVRIKSWGRPSNGFAKNILFQHIVFDNVNNPLIIDQNYCPHNQGCPGQASGVKISNVR 60
           MNGVRIKSWGRPSNGFAKNILF+HIVFDNVNNPLIIDQNYCPHNQGCPGQASGVKISNVR
Sbjct: 271 MNGVRIKSWGRPSNGFAKNILFKHIVFDNVNNPLIIDQNYCPHNQGCPGQASGVKISNVR 330

Query: 61  YEDIHGTSATEVGINFECSPARPCNEIRLKDVKLIFKDQIAQASCEYATGTTLGLVQPSN 120
           YEDIHGTSATEVGINFECSPARPCNEIRLKDVKLIFKDQIAQASCEYATGTTLGLVQPSN
Sbjct: 331 YEDIHGTSATEVGINFECSPARPCNEIRLKDVKLIFKDQIAQASCEYATGTTLGLVQPSN 390

Query: 121 CLV 124
           CL+
Sbjct: 391 CLL 393

[Close]

BLAST of MELO3C015128 vs. NCBI nr
Match: gi|449442583|ref|XP_004139061.1| (PREDICTED: polygalacturonase-like [Cucumis sativus])

HSP 1 Score: 238.0 bits (606), Expect = 8.6e-60
Identity = 113/123 (91.87%), Postives = 116/123 (94.31%), Query Frame = 1


Query: 1   MNGVRIKSWGRPSNGFAKNILFQHIVFDNVNNPLIIDQNYCPHNQGCPGQASGVKISNVR 60
           MNGVRIKSWGRPSNG AKNILFQHIV DNV NPLIIDQNYCPHNQGCP QASGVKISNV 
Sbjct: 271 MNGVRIKSWGRPSNGSAKNILFQHIVLDNVTNPLIIDQNYCPHNQGCPNQASGVKISNVT 330

Query: 61  YEDIHGTSATEVGINFECSPARPCNEIRLKDVKLIFKDQIAQASCEYATGTTLGLVQPSN 120
           Y+DI GTSATEVGINFECSPARPCN+IRL+DVKLIFKDQIAQA CEYATGTTLGLVQPSN
Sbjct: 331 YKDIRGTSATEVGINFECSPARPCNQIRLEDVKLIFKDQIAQAWCEYATGTTLGLVQPSN 390

Query: 121 CLV 124
           CLV
Sbjct: 391 CLV 393

[Close]

BLAST of MELO3C015128 vs. NCBI nr
Match: gi|694432622|ref|XP_009343653.1| (PREDICTED: polygalacturonase-like [Pyrus x bretschneideri])

HSP 1 Score: 191.4 bits (485), Expect = 9.2e-46
Identity = 85/121 (70.25%), Postives = 103/121 (85.12%), Query Frame = 1


Query: 2   NGVRIKSWGRPSNGFAKNILFQHIVFDNVNNPLIIDQNYCPHNQGCPGQASGVKISNVRY 61
           NGVRIKSWGRPS GFA+NILFQHIV  NV NP+IIDQ+YCP+N+GCPGQ SGVK+S+V Y
Sbjct: 278 NGVRIKSWGRPSTGFARNILFQHIVMTNVQNPIIIDQHYCPNNKGCPGQVSGVKVSDVTY 337

Query: 62  EDIHGTSATEVGINFECSPARPCNEIRLKDVKLIFKDQIAQASCEYATGTTLGLVQPSNC 121
           +DIHGTSATEV + F+CS   PCN IRL+DVKL +++Q A+ASC +A GTT G VQP++C
Sbjct: 338 QDIHGTSATEVAVKFDCSSKYPCNRIRLQDVKLTYQNQAAEASCSHAGGTTAGTVQPTSC 397

Query: 122 L 123
           L
Sbjct: 398 L 398

The following BLAST results are available for this feature:

BLAST of MELO3C015128 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PGLR_PRUPE	6.4e-47	67.77	Polygalacturonase OS=Prunus persica PE=2 SV=1	[more]
PGLR6_ARATH	4.4e-32	56.20	Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 S...	[more]
QRT2_ARATH	4.9e-23	45.38	Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2	[more]
PGLR_PERAE	1.0e-20	51.06	Polygalacturonase OS=Persea americana PE=2 SV=1	[more]
PGLR_ACTDE	1.3e-20	45.76	Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1	[more]

BLAST of MELO3C015128 vs. TrEMBL


Match Name	E-value	Identity	Description
A4UQV4_CUCME	2.5e-66	99.19	Polygalacturonase OS=Cucumis melo GN=MPG PE=2 SV=1	[more]
O81244_CUCME	7.3e-66	98.37	Polygalacturonase OS=Cucumis melo GN=MPG1 PE=2 SV=1	[more]
A0A0A0LXR8_CUCSA	6.0e-60	91.87	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G627470 PE=3 SV=1	[more]
A0A059AUR6_EUCGR	8.4e-46	68.60	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_H00254 PE=3 ...	[more]
W9RN73_9ROSA	1.4e-45	70.25	Uncharacterized protein OS=Morus notabilis GN=L484_020358 PE=3 SV=1	[more]

BLAST of MELO3C015128 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G59850.1	1.5e-41	59.50	Pectin lyase-like superfamily protein	[more]
AT2G43870.1	2.0e-38	61.16	Pectin lyase-like superfamily protein	[more]
AT2G43890.1	1.9e-36	53.72	Pectin lyase-like superfamily protein	[more]
AT1G05650.1	3.5e-35	54.10	Pectin lyase-like superfamily protein	[more]
AT1G05660.1	1.0e-34	54.10	Pectin lyase-like superfamily protein	[more]

BLAST of MELO3C015128 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659098912\|ref\|XP_008450348.1\|	1.6e-66	100.00	PREDICTED: polygalacturonase-like [Cucumis melo]	[more]
gi\|134305344\|gb\|ABO71786.1\|	3.6e-66	99.19	polygalacturonase [Cucumis melo]	[more]
gi\|3320458\|gb\|AAC26510.1\|	1.0e-65	98.37	polygalacturonase precursor [Cucumis melo]	[more]
gi\|449442583\|ref\|XP_004139061.1\|	8.6e-60	91.87	PREDICTED: polygalacturonase-like [Cucumis sativus]	[more]
gi\|694432622\|ref\|XP_009343653.1\|	9.2e-46	70.25	PREDICTED: polygalacturonase-like [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000743	Glyco_hydro_28
IPR011050	Pectin_lyase_fold/virulence
IPR012334	Pectin_lyas_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0004650	polygalacturonase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071555	cell wall organization
biological_process	GO:0009835	fruit ripening
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0005618	cell wall
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004650	polygalacturonase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU45071	melon EST collection version 4.0	transcribed_cluster
MU48839	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C015128T1	MELO3C015128T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU45071	MU45071	transcribed_cluster
MU48839	MU48839	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 1..108 score: 3.6
IPR011050	Pectin lyase fold/virulence factor	unknown	SSF51126	Pectin lyase-like	coord: 1..122 score: 5.23
IPR012334	Pectin lyase fold	GENE3D	G3DSA:2.160.20.10		coord: 1..122 score: 1.9
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 2..122 score: 9.6
None	No IPR available	PANTHER	PTHR31375:SF2	POLYGALACTURONASE/PECTINASE	coord: 2..122 score: 9.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C015128	CsGy1G030170	Cucumber (Gy14) v2	cgybmeB038
MELO3C015128	CsaV3_1G043310	Cucumber (Chinese Long) v3	cucmeB042

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C015128	Cucumber (Gy14) v2	cgybmeB405
MELO3C015128	Silver-seed gourd	carmeB0432
MELO3C015128	Silver-seed gourd	carmeB0527
MELO3C015128	Silver-seed gourd	carmeB0947
MELO3C015128	Cucumber (Chinese Long) v3	cucmeB474
MELO3C015128	Watermelon (97103) v2	mewmbB243
MELO3C015128	Watermelon (97103) v2	mewmbB249
MELO3C015128	Wax gourd	mewgoB278
MELO3C015128	Wax gourd	mewgoB305
MELO3C015128	Melon (DHL92) v3.5.1	memeB109
MELO3C015128	Cucurbita moschata (Rifu)	cmomeB097
MELO3C015128	Cucumber (Gy14) v1	cgymeB227
MELO3C015128	Cucurbita maxima (Rimu)	cmameB066
MELO3C015128	Cucurbita maxima (Rimu)	cmameB104
MELO3C015128	Cucurbita moschata (Rifu)	cmomeB058
MELO3C015128	Wild cucumber (PI 183967)	cpimeB042
MELO3C015128	Wild cucumber (PI 183967)	cpimeB463
MELO3C015128	Cucumber (Chinese Long) v2	cumeB041
MELO3C015128	Watermelon (Charleston Gray)	mewcgB245
MELO3C015128	Watermelon (Charleston Gray)	mewcgB238
MELO3C015128	Watermelon (97103) v1	mewmB273
MELO3C015128	Watermelon (97103) v1	mewmB283
MELO3C015128	Cucurbita pepo (Zucchini)	cpemeB329
MELO3C015128	Cucurbita pepo (Zucchini)	cpemeB620
MELO3C015128	Bottle gourd (USVL1VR-Ls)	lsimeB069
MELO3C015128	Bottle gourd (USVL1VR-Ls)	lsimeB396