MELO3C015119 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C015119
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Asparagine--tRNA ligase
Location	chr2 : 7139155 .. 7139804 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAATTCTGTTATAAAGGCAAGTAGCAGCTCCTTTTGTTTCCCATCTATCGAGAGCTATATTTTAGCCAAAAATTATTCTTTGGACTTTCTCAAGAGTGTGTTTCATATGTAATTAACATTTTCAACACAGTACTGATTCATGAAGTTTTTGTTTCCCTTTTAACTCGTGGTGGCATGACTAGCCATGGCACTATATCTTGGACACTTTTCTATAAATTTGCAGGAGACCACGGCTCTACTGTGAACTTTCTGATTGTCCAGTGGAACTACTTCACCCCTCTGAAGATTGTAACGTGAATTCCACATTGCCCTTCACTCTTCAGGTGTCTCATTAGCCAGATTGACCACTAAGTAGTTATCTTGTGTGGAGAATATTATTTTTGAGATTTATTCATTACACTGAACATGCTTTTCATTGTCTAATCTGATATTTGTTTGCTTGGCTTGTTTCTGCAGATTTGTCGAGTTGAAGATCTAACAGTTGAAGGCACCATAACTGGATCTGTTATTCACTTTCACTGGGTCAGGGATATATTTGTTTACCTATCTGGTGCAATTAGTGCTTCTGGTCTTGGTATGCATTTTTCTTCCAATTATTTTGTTCTTACCTGGCAGGTTCAAGTAGTTTTAATGAAAAATTTTTAA

mRNA sequence

ATGAGCAATTCTGTTATAAAGGCAAGTAGCAGCTCCTTTTGTTTCCCATCTATCGAGAGCTATATTTTAGCCAAAAATTATTCTTTGGACTTTCTCAAGAGTGTGTTTCATATGAGACCACGGCTCTACTGTGAACTTTCTGATTGTCCAGTGGAACTACTTCACCCCTCTGAAGATTGTAACGTGAATTCCACATTGCCCTTCACTCTTCAGATTTGTCGAGTTGAAGATCTAACAGTTGAAGGCACCATAACTGGATCTGTTATTCACTTTCACTGGGTCAGGGATATATTTGTTTACCTATCTGGTGCAATTAGTGCTTCTGGTCTTGGTATGCATTTTTCTTCCAATTATTTTGTTCTTACCTGGCAGGTTCAAGTAGTTTTAATGAAAAATTTTTAA

Coding sequence (CDS)

ATGAGCAATTCTGTTATAAAGGCAAGTAGCAGCTCCTTTTGTTTCCCATCTATCGAGAGCTATATTTTAGCCAAAAATTATTCTTTGGACTTTCTCAAGAGTGTGTTTCATATGAGACCACGGCTCTACTGTGAACTTTCTGATTGTCCAGTGGAACTACTTCACCCCTCTGAAGATTGTAACGTGAATTCCACATTGCCCTTCACTCTTCAGATTTGTCGAGTTGAAGATCTAACAGTTGAAGGCACCATAACTGGATCTGTTATTCACTTTCACTGGGTCAGGGATATATTTGTTTACCTATCTGGTGCAATTAGTGCTTCTGGTCTTGGTATGCATTTTTCTTCCAATTATTTTGTTCTTACCTGGCAGGTTCAAGTAGTTTTAATGAAAAATTTTTAA

Protein sequence

MSNSVIKASSSSFCFPSIESYILAKNYSLDFLKSVFHMRPRLYCELSDCPVELLHPSEDCNVNSTLPFTLQICRVEDLTVEGTITGSVIHFHWVRDIFVYLSGAISASGLGMHFSSNYFVLTWQVQVVLMKNF*

Homology

[Close]

BLAST of MELO3C015119 vs. TrEMBL
Match: A0A0A0LIP4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000650 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.4e-33
Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 1


Query: 39  RPRLYCELSDCPVELLHPSEDCNVNSTLPFTLQICRVEDLTVEGTITGSVIHFHWVRDIF 98
           RPRLYCELSDCP ELLHP EDCNVNS+LPFTLQICRVEDLTVEGTITGSVIHFHWVRDIF
Sbjct: 525 RPRLYCELSDCPAELLHPPEDCNVNSSLPFTLQICRVEDLTVEGTITGSVIHFHWVRDIF 584

Query: 99  VYLSGAISASGLG 112
           VYLSGAISASGLG
Sbjct: 585 VYLSGAISASGLG 597

[Close]

BLAST of MELO3C015119 vs. TrEMBL
Match: A0A067KC35_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07337 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.9e-27
Identity = 57/74 (77.03%), Postives = 67/74 (90.54%), Query Frame = 1


Query: 38  MRPRLYCELSDCPVELLHPSEDCNVNSTLPFTLQICRVEDLTVEGTITGSVIHFHWVRDI 97
           M+PRLYC+L +CP+EL+HP EDCNVNS+LPFTLQICRVED+ VEG ITGSV+HFHWVR++
Sbjct: 86  MKPRLYCDLQECPMELIHPPEDCNVNSSLPFTLQICRVEDIIVEGMITGSVVHFHWVRNV 145

Query: 98  FVYLSGAISASGLG 112
            V  SGAISASGLG
Sbjct: 146 VVRSSGAISASGLG 159

[Close]

BLAST of MELO3C015119 vs. TrEMBL
Match: B9RKE2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1048790 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.2e-26
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 1


Query: 38  MRPRLYCELSDCPVELLHPSEDCNVNSTLPFTLQICRVEDLTVEGTITGSVIHFHWVRDI 97
           M P+LYC+  DCPVEL+HP EDCNVNS+LPFTLQICRVED+ VEG ITGSV+HFHWVR +
Sbjct: 284 MTPQLYCDFEDCPVELIHPPEDCNVNSSLPFTLQICRVEDVIVEGMITGSVVHFHWVRTL 343

Query: 98  FVYLSGAISASGLG 112
            V  SGAISASGLG
Sbjct: 344 VVQSSGAISASGLG 357

[Close]

BLAST of MELO3C015119 vs. TrEMBL
Match: A0A0D2U9U1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G103600 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 6.1e-26
Identity = 57/72 (79.17%), Postives = 60/72 (83.33%), Query Frame = 1


Query: 40  PRLYCELSDCPVELLHPSEDCNVNSTLPFTLQICRVEDLTVEGTITGSVIHFHWVRDIFV 99
           PRLYCEL DCP ELLHP EDCNVNS+LPFTLQICRVED+TVEG I GSV+HFHW R I V
Sbjct: 529 PRLYCELQDCPTELLHPPEDCNVNSSLPFTLQICRVEDITVEGLIKGSVVHFHWARTISV 588

Query: 100 YLSGAISASGLG 112
             SG ISASG G
Sbjct: 589 QSSGVISASGTG 600

[Close]

BLAST of MELO3C015119 vs. TrEMBL
Match: K7L4P8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G031500 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.0e-25
Identity = 56/74 (75.68%), Postives = 64/74 (86.49%), Query Frame = 1


Query: 38  MRPRLYCELSDCPVELLHPSEDCNVNSTLPFTLQICRVEDLTVEGTITGSVIHFHWVRDI 97
           M P+LYCE+ +CPVELLHP EDCNVNS+L FTLQICRVED+ VEGTITGSV+HFHW+R+I
Sbjct: 524 MTPQLYCEVENCPVELLHPPEDCNVNSSLAFTLQICRVEDVIVEGTITGSVVHFHWIRNI 583

Query: 98  FVYLSGAISASGLG 112
            V  SG IS SGLG
Sbjct: 584 DVSYSGVISVSGLG 597

[Close]

BLAST of MELO3C015119 vs. TAIR10
Match: AT4G32920.1 (AT4G32920.1 glycine-rich protein)

HSP 1 Score: 114.4 bits (285), Expect = 5.5e-26
Identity = 52/74 (70.27%), Postives = 57/74 (77.03%), Query Frame = 1


Query: 38  MRPRLYCELSDCPVELLHPSEDCNVNSTLPFTLQICRVEDLTVEGTITGSVIHFHWVRDI 97
           + P+LYC+  DCPVELLHP EDCNVNS+LPFTLQICRVED+TVEG I GSVI FH  R +
Sbjct: 523 LTPKLYCQRQDCPVELLHPPEDCNVNSSLPFTLQICRVEDITVEGLIKGSVIQFHLARTV 582

Query: 98  FVYLSGAISASGLG 112
            V  SG ISA G+G
Sbjct: 583 LVRSSGTISADGMG 596

[Close]

BLAST of MELO3C015119 vs. TAIR10
Match: AT5G11700.2 (AT5G11700.2 BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G32920.3))

HSP 1 Score: 103.6 bits (257), Expect = 9.7e-23
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 1


Query: 40  PRLYCELSDCPVELLHPSEDCNVNSTLPFTLQICRVEDLTVEGTITGSVIHFHWVRDIFV 99
           P+LYCE  DCP ELL+P EDCNVN++L FTLQICRVED+ VEG I GSV+HFH  + + +
Sbjct: 536 PKLYCERQDCPYELLNPPEDCNVNASLSFTLQICRVEDILVEGFIKGSVVHFHRAKTVTL 595

Query: 100 YLSGAISASGLG 112
             SG ISASG+G
Sbjct: 596 EPSGEISASGMG 607

[Close]

BLAST of MELO3C015119 vs. TAIR10
Match: AT5G47020.1 (AT5G47020.1 unknown protein)

HSP 1 Score: 79.3 bits (194), Expect = 1.9e-15
Identity = 35/68 (51.47%), Postives = 44/68 (64.71%), Query Frame = 1


Query: 44  CELSDCPVELLHPSEDCNVNSTLPFTLQICRVEDLTVEGTITGSVIHFHWVRDIFVYLSG 103
           CE   CP++L+ P +DC+VN TL F+LQICRVED+ V G + GS+I  H  R + V   G
Sbjct: 515 CESKTCPIDLISPPDDCHVNYTLSFSLQICRVEDILVRGLVKGSIIQIHRARTVVVTDDG 574

Query: 104 AISASGLG 112
            I+ASG G
Sbjct: 575 LITASGFG 582

[Close]

BLAST of MELO3C015119 vs. NCBI nr
Match: gi|778665706|ref|XP_011648619.1| (PREDICTED: uncharacterized protein LOC101212069 isoform X2 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 2.0e-33
Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 1


Query: 39  RPRLYCELSDCPVELLHPSEDCNVNSTLPFTLQICRVEDLTVEGTITGSVIHFHWVRDIF 98
           RPRLYCELSDCP ELLHP EDCNVNS+LPFTLQICRVEDLTVEGTITGSVIHFHWVRDIF
Sbjct: 240 RPRLYCELSDCPAELLHPPEDCNVNSSLPFTLQICRVEDLTVEGTITGSVIHFHWVRDIF 299

Query: 99  VYLSGAISASGLG 112
           VYLSGAISASGLG
Sbjct: 300 VYLSGAISASGLG 312

[Close]

BLAST of MELO3C015119 vs. NCBI nr
Match: gi|778665702|ref|XP_011648618.1| (PREDICTED: uncharacterized protein LOC101212069 isoform X1 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 2.0e-33
Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 1


Query: 39  RPRLYCELSDCPVELLHPSEDCNVNSTLPFTLQICRVEDLTVEGTITGSVIHFHWVRDIF 98
           RPRLYCELSDCP ELLHP EDCNVNS+LPFTLQICRVEDLTVEGTITGSVIHFHWVRDIF
Sbjct: 525 RPRLYCELSDCPAELLHPPEDCNVNSSLPFTLQICRVEDLTVEGTITGSVIHFHWVRDIF 584

Query: 99  VYLSGAISASGLG 112
           VYLSGAISASGLG
Sbjct: 585 VYLSGAISASGLG 597

[Close]

BLAST of MELO3C015119 vs. NCBI nr
Match: gi|643724565|gb|KDP33766.1| (hypothetical protein JCGZ_07337 [Jatropha curcas])

HSP 1 Score: 130.2 bits (326), Expect = 2.7e-27
Identity = 57/74 (77.03%), Postives = 67/74 (90.54%), Query Frame = 1


Query: 38  MRPRLYCELSDCPVELLHPSEDCNVNSTLPFTLQICRVEDLTVEGTITGSVIHFHWVRDI 97
           M+PRLYC+L +CP+EL+HP EDCNVNS+LPFTLQICRVED+ VEG ITGSV+HFHWVR++
Sbjct: 86  MKPRLYCDLQECPMELIHPPEDCNVNSSLPFTLQICRVEDIIVEGMITGSVVHFHWVRNV 145

Query: 98  FVYLSGAISASGLG 112
            V  SGAISASGLG
Sbjct: 146 VVRSSGAISASGLG 159

[Close]

BLAST of MELO3C015119 vs. NCBI nr
Match: gi|802627774|ref|XP_012076823.1| (PREDICTED: uncharacterized protein LOC105637809 [Jatropha curcas])

HSP 1 Score: 130.2 bits (326), Expect = 2.7e-27
Identity = 57/74 (77.03%), Postives = 67/74 (90.54%), Query Frame = 1


Query: 38  MRPRLYCELSDCPVELLHPSEDCNVNSTLPFTLQICRVEDLTVEGTITGSVIHFHWVRDI 97
           M+PRLYC+L +CP+EL+HP EDCNVNS+LPFTLQICRVED+ VEG ITGSV+HFHWVR++
Sbjct: 533 MKPRLYCDLQECPMELIHPPEDCNVNSSLPFTLQICRVEDIIVEGMITGSVVHFHWVRNV 592

Query: 98  FVYLSGAISASGLG 112
            V  SGAISASGLG
Sbjct: 593 VVRSSGAISASGLG 606

[Close]

BLAST of MELO3C015119 vs. NCBI nr
Match: gi|223546642|gb|EEF48140.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 127.5 bits (319), Expect = 1.8e-26
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 1


Query: 38  MRPRLYCELSDCPVELLHPSEDCNVNSTLPFTLQICRVEDLTVEGTITGSVIHFHWVRDI 97
           M P+LYC+  DCPVEL+HP EDCNVNS+LPFTLQICRVED+ VEG ITGSV+HFHWVR +
Sbjct: 284 MTPQLYCDFEDCPVELIHPPEDCNVNSSLPFTLQICRVEDVIVEGMITGSVVHFHWVRTL 343

Query: 98  FVYLSGAISASGLG 112
            V  SGAISASGLG
Sbjct: 344 VVQSSGAISASGLG 357

The following BLAST results are available for this feature:

BLAST of MELO3C015119 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIP4_CUCSA	1.4e-33	95.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000650 PE=4 SV=1	[more]
A0A067KC35_JATCU	1.9e-27	77.03	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07337 PE=4 SV=1	[more]
B9RKE2_RICCO	1.2e-26	77.03	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1048790 PE=4 SV=1	[more]
A0A0D2U9U1_GOSRA	6.1e-26	79.17	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G103600 PE=4 SV=1	[more]
K7L4P8_SOYBN	1.0e-25	75.68	Uncharacterized protein OS=Glycine max GN=GLYMA_08G031500 PE=4 SV=1	[more]

BLAST of MELO3C015119 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G32920.1	5.5e-26	70.27	glycine-rich protein	[more]
AT5G11700.2	9.7e-23	65.28	BEST Arabidopsis thaliana protein match is: glycine-rich protein (TA...	[more]
AT5G47020.1	1.9e-15	51.47	unknown protein	[more]

BLAST of MELO3C015119 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778665706\|ref\|XP_011648619.1\|	2.0e-33	95.89	PREDICTED: uncharacterized protein LOC101212069 isoform X2 [Cucumis sativus]	[more]
gi\|778665702\|ref\|XP_011648618.1\|	2.0e-33	95.89	PREDICTED: uncharacterized protein LOC101212069 isoform X1 [Cucumis sativus]	[more]
gi\|643724565\|gb\|KDP33766.1\|	2.7e-27	77.03	hypothetical protein JCGZ_07337 [Jatropha curcas]	[more]
gi\|802627774\|ref\|XP_012076823.1\|	2.7e-27	77.03	PREDICTED: uncharacterized protein LOC105637809 [Jatropha curcas]	[more]
gi\|223546642\|gb\|EEF48140.1\|	1.8e-26	77.03	conserved hypothetical protein [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C015119T1	MELO3C015119T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31513	FAMILY NOT NAMED	coord: 34..111 score: 1.2
None	No IPR available	PANTHER	PTHR31513:SF1	GLYCINE-RICH PROTEIN	coord: 34..111 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C015119	Silver-seed gourd	carmeB0876
MELO3C015119	Silver-seed gourd	carmeB0947
MELO3C015119	Cucumber (Chinese Long) v3	cucmeB042
MELO3C015119	Watermelon (97103) v2	mewmbB249
MELO3C015119	Wax gourd	mewgoB305
MELO3C015119	Cucurbita moschata (Rifu)	cmomeB097
MELO3C015119	Cucumber (Gy14) v1	cgymeB575
MELO3C015119	Cucurbita maxima (Rimu)	cmameB066
MELO3C015119	Cucurbita maxima (Rimu)	cmameB104
MELO3C015119	Cucurbita moschata (Rifu)	cmomeB058
MELO3C015119	Wild cucumber (PI 183967)	cpimeB042
MELO3C015119	Cucumber (Chinese Long) v2	cumeB041
MELO3C015119	Watermelon (Charleston Gray)	mewcgB245
MELO3C015119	Watermelon (97103) v1	mewmB273
MELO3C015119	Cucurbita pepo (Zucchini)	cpemeB329
MELO3C015119	Cucurbita pepo (Zucchini)	cpemeB620
MELO3C015119	Bottle gourd (USVL1VR-Ls)	lsimeB396
MELO3C015119	Cucumber (Gy14) v2	cgybmeB038