MELO3C015092 (gene) Melon (DHL92) v3.5.1

NameMELO3C015092
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDNA-directed RNA polymerase subunit omega
Locationchr2 : 7596963 .. 7597382 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAATCGCATCCTGCAGCAAAAGGCCTCCTTAACAAACTGTTTTCCTATTACGATGAACTTGCATATGTGTTCAGGAGAGATAGGGCGACGGGTCAGTTTGCAGAGACATTCGTCGACATCGAGTCTAATGAGCTTGCCGGGTACGAGGGGTTTGACATGTCGGATGAAAATGATATGGAGTTTCCATTCATGTATAGCCAGAGGATTGTCATGTCTCAAGATGATGTACGCGCCTCACGACCTTATAGCGTGTCCGATAGTAGAACCGGATCGAGCGGATCCAAGCAAAAGAGGGAAAGCCAGTGGGAGGGTGAGATTGAGATGATACATATGGCGCTGGAGTGTGCGAATGACCAATTGAGGACCATTGTAGAGTGGTCTGCGCGTGCCCTTGCCAATGACACCACAGTTCATTAA

mRNA sequence

ATGCAATCGCATCCTGCAGCAAAAGGCCTCCTTAACAAACTGTTTTCCTATTACGATGAACTTGCATATGTGTTCAGGAGAGATAGGGCGACGGGTCAGTTTGCAGAGACATTCGTCGACATCGAGTCTAATGAGCTTGCCGGGTACGAGGGGTTTGACATGTCGGATGAAAATGATATGGAGTTTCCATTCATGTATAGCCAGAGGATTGTCATGTCTCAAGATGATGTACGCGCCTCACGACCTTATAGCGTGTCCGATAGTAGAACCGGATCGAGCGGATCCAAGCAAAAGAGGGAAAGCCAGTGGGAGGGTGAGATTGAGATGATACATATGGCGCTGGAGTGTGCGAATGACCAATTGAGGACCATTGTAGAGTGGTCTGCGCGTGCCCTTGCCAATGACACCACAGTTCATTAA

Coding sequence (CDS)

ATGCAATCGCATCCTGCAGCAAAAGGCCTCCTTAACAAACTGTTTTCCTATTACGATGAACTTGCATATGTGTTCAGGAGAGATAGGGCGACGGGTCAGTTTGCAGAGACATTCGTCGACATCGAGTCTAATGAGCTTGCCGGGTACGAGGGGTTTGACATGTCGGATGAAAATGATATGGAGTTTCCATTCATGTATAGCCAGAGGATTGTCATGTCTCAAGATGATGTACGCGCCTCACGACCTTATAGCGTGTCCGATAGTAGAACCGGATCGAGCGGATCCAAGCAAAAGAGGGAAAGCCAGTGGGAGGGTGAGATTGAGATGATACATATGGCGCTGGAGTGTGCGAATGACCAATTGAGGACCATTGTAGAGTGGTCTGCGCGTGCCCTTGCCAATGACACCACAGTTCATTAA

Protein sequence

MQSHPAAKGLLNKLFSYYDELAYVFRRDRATGQFAETFVDIESNELAGYEGFDMSDENDMEFPFMYSQRIVMSQDDVRASRPYSVSDSRTGSSGSKQKRESQWEGEIEMIHMALECANDQLRTIVEWSARALANDTTVH*
BLAST of MELO3C015092 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.8e-36
Identity = 84/139 (60.43%), Postives = 104/139 (74.82%), Query Frame = 1

Query: 1   MQSHPAAKGLLNKLFSYYDELAYVFRRDRATGQFAETFVDIESNEL-AGYEGFDMSDEND 60
           ++S PAAKGLLN  F YYDEL YVF RDRATG+FAETF D+ SNE   GY+ FDM D N+
Sbjct: 429 VRSPPAAKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE 488

Query: 61  MEFPFMYSQRIVMSQDDVRASRPYSVSDSRTGSSGSKQKRESQWEGEIEMIHMALECAND 120
            +FP +YS+ + + QDDVRASRP   S+ +TGSSGSK+KR SQ + ++E IH+AL+  N+
Sbjct: 489 -DFPPVYSRGVDILQDDVRASRPSRASEGKTGSSGSKRKRGSQRDFDVEAIHLALDQTNE 548

Query: 121 QLRTIVEWSARALANDTTV 139
           QLR I EW AR LAND  V
Sbjct: 549 QLRQIAEWPARNLANDNHV 566

BLAST of MELO3C015092 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.3e-23
Identity = 62/125 (49.60%), Postives = 79/125 (63.20%), Query Frame = 1

Query: 3   SHPAAKGLLNKLFSYYDELAYVFRRDRATGQFAETFVDIESNELAGYEGFDMSDENDMEF 62
           SHPAAKGLLNK F +YDEL+YVF +DRATG  AE+F DI SN+  GY+        D +F
Sbjct: 466 SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDF 525

Query: 63  PFMYSQRIVMSQDDVRASRPYSVSDSRTGSSGSKQKRESQWEGEIEMIHMALECANDQLR 122
           P MYS  + MS DD+  +R   VS+ R  SSGSK+KR        +++  A+E  N+QL 
Sbjct: 526 PPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLH 585

Query: 123 TIVEW 128
            I EW
Sbjct: 586 RIAEW 590

BLAST of MELO3C015092 vs. TrEMBL
Match: A5Y732_CUCME (Transposase OS=Cucumis melo PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.6e-19
Identity = 49/72 (68.06%), Postives = 55/72 (76.39%), Query Frame = 1

Query: 2   QSHPAAKGLLNKLFSYYDELAYVFRRDRATGQFAETFVDIESNELAGYEGFDMSDENDME 61
           Q+HPAAKGLLNKLF YYDEL YVF RDR TGQ  +TFV++ESN+   YEGF   DENDM+
Sbjct: 276 QTHPAAKGLLNKLFPYYDELVYVFERDRVTGQGVKTFVNVESNDPIEYEGFQTPDENDMK 335

Query: 62  FPFMYSQRIVMS 74
            P MYSQ   MS
Sbjct: 336 NPTMYSQGFNMS 347

BLAST of MELO3C015092 vs. TrEMBL
Match: A0A0A0L3I2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G000030 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.6e-07
Identity = 38/88 (43.18%), Postives = 50/88 (56.82%), Query Frame = 1

Query: 41  IESNELAGYEGFDMSDENDMEFPFMYSQRIVMSQDDVRASRPYSVSDSRTGSSGSKQKRE 100
           + SN L GYEGF   D NDMEFP MYSQR+ +S D++  +R     D R  SS SK+K  
Sbjct: 40  VGSNVLGGYEGFASDDGNDMEFPTMYSQRLDISPDEIMETRS-RAGDRRNASSKSKRK-- 99

Query: 101 SQWEGE-IEMIHMALECANDQLRTIVEW 128
             W G+ IE  H+        LR ++E+
Sbjct: 100 --WRGQSIETAHI--------LRNVIEY 114

BLAST of MELO3C015092 vs. TrEMBL
Match: E5GBB1_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.9e-06
Identity = 30/90 (33.33%), Postives = 50/90 (55.56%), Query Frame = 1

Query: 50  EGFDMSDENDMEFPFMYSQRIVMSQDDVRASRPYSVSDSRTGSSGSKQKRESQWEGEIEM 109
           +G  + D +D + P MYSQ + M  +++   R    S+ R  SSGSK+K+ S+    +E+
Sbjct: 4   DGVPLGDSHDQDIPTMYSQGVHMLSNEMFGIRADQASERRNCSSGSKRKQGSEHYEMVEV 63

Query: 110 IHMALECANDQLRTIVEWSARALANDTTVH 140
           I  A+E  NDQL+   +WS    + +  +H
Sbjct: 64  IKSAMEFGNDQLKAFEDWSKDKHSTEVELH 93

BLAST of MELO3C015092 vs. NCBI nr
Match: gi|659093712|ref|XP_008447677.1| (PREDICTED: uncharacterized protein LOC103490086 [Cucumis melo])

HSP 1 Score: 163.7 bits (413), Expect = 2.3e-37
Identity = 86/134 (64.18%), Postives = 103/134 (76.87%), Query Frame = 1

Query: 6   AAKGLLNKLFSYYDELAYVFRRDRATGQFAETFVDIESNELAGYEGFDMSDENDMEFPFM 65
           ++KGLLNK F YYDELAY+F RDR T +F ETF DI SNE   YEGF+MSD N+ EF  +
Sbjct: 169 SSKGLLNKSFPYYDELAYMFDRDRTTDRFIETFTDIGSNEPIRYEGFNMSDGNE-EFSSI 228

Query: 66  YSQRIVMSQDDVRASRPYSVSDSRTGSSGSKQKRESQWEGEIEMIHMALECANDQLRTIV 125
           YSQ I MSQ+DV AS+P   S+SR  SS  K+KR SQ +GEI++IHMAL+C NDQL+ IV
Sbjct: 229 YSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMALKCMNDQLKKIV 288

Query: 126 EWSARALANDTTVH 140
           EW ARALAN+T VH
Sbjct: 289 EWHARALANNTHVH 301

BLAST of MELO3C015092 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 160.2 bits (404), Expect = 2.6e-36
Identity = 84/139 (60.43%), Postives = 104/139 (74.82%), Query Frame = 1

Query: 1   MQSHPAAKGLLNKLFSYYDELAYVFRRDRATGQFAETFVDIESNEL-AGYEGFDMSDEND 60
           ++S PAAKGLLN  F YYDEL YVF RDRATG+FAETF D+ SNE   GY+ FDM D N+
Sbjct: 429 VRSPPAAKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE 488

Query: 61  MEFPFMYSQRIVMSQDDVRASRPYSVSDSRTGSSGSKQKRESQWEGEIEMIHMALECAND 120
            +FP +YS+ + + QDDVRASRP   S+ +TGSSGSK+KR SQ + ++E IH+AL+  N+
Sbjct: 489 -DFPPVYSRGVDILQDDVRASRPSRASEGKTGSSGSKRKRGSQRDFDVEAIHLALDQTNE 548

Query: 121 QLRTIVEWSARALANDTTV 139
           QLR I EW AR LAND  V
Sbjct: 549 QLRQIAEWPARNLANDNHV 566

BLAST of MELO3C015092 vs. NCBI nr
Match: gi|659068476|ref|XP_008444620.1| (PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo])

HSP 1 Score: 122.5 bits (306), Expect = 5.9e-25
Identity = 62/94 (65.96%), Postives = 70/94 (74.47%), Query Frame = 1

Query: 4   HPAAKGLLNKLFSYYDELAYVFRRDRATGQFAETFVDIESNELAGYEGFDMSDENDMEFP 63
           HP AK LLNK F YYDELAYVF++DRATG+  ETF DI SN+ + YEGF   D NDME P
Sbjct: 32  HPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPPDGNDMEIP 91

Query: 64  FMYSQRIVMSQDDVRASRPYSVSDSRTGSSGSKQ 98
            +YSQ   MSQ+DV A RP S SDSRT SSGSK+
Sbjct: 92  TIYSQGFNMSQEDVWAPRPSSASDSRTRSSGSKR 125

BLAST of MELO3C015092 vs. NCBI nr
Match: gi|659123900|ref|XP_008461893.1| (PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo])

HSP 1 Score: 117.5 bits (293), Expect = 1.9e-23
Identity = 60/125 (48.00%), Postives = 81/125 (64.80%), Query Frame = 1

Query: 3   SHPAAKGLLNKLFSYYDELAYVFRRDRATGQFAETFVDIESNELAGYEGFDMSDENDMEF 62
           SHPAAKGLLNK F +YDEL+YVF +D ATG  AE+F D+ SN+  GY+ F  +  +D +F
Sbjct: 60  SHPAAKGLLNKSFPHYDELSYVFSKDHATGGRAESFADVGSNDPTGYDAFAANAASDTDF 119

Query: 63  PFMYSQRIVMSQDDVRASRPYSVSDSRTGSSGSKQKRESQWEGEIEMIHMALECANDQLR 122
             MYS+ + MS D++  +R   VS+ R  SSGSKQKR        +++  A+E  N+QL 
Sbjct: 120 QPMYSRGLNMSPDELMGTRTARVSEGRYVSSGSKQKRGGSTIDSGDILRTAIEYGNEQLN 179

Query: 123 TIVEW 128
            I EW
Sbjct: 180 RIAEW 184

BLAST of MELO3C015092 vs. NCBI nr
Match: gi|307136287|gb|ADN34114.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 116.7 bits (291), Expect = 3.3e-23
Identity = 62/125 (49.60%), Postives = 79/125 (63.20%), Query Frame = 1

Query: 3   SHPAAKGLLNKLFSYYDELAYVFRRDRATGQFAETFVDIESNELAGYEGFDMSDENDMEF 62
           SHPAAKGLLNK F +YDEL+YVF +DRATG  AE+F DI SN+  GY+        D +F
Sbjct: 466 SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDF 525

Query: 63  PFMYSQRIVMSQDDVRASRPYSVSDSRTGSSGSKQKRESQWEGEIEMIHMALECANDQLR 122
           P MYS  + MS DD+  +R   VS+ R  SSGSK+KR        +++  A+E  N+QL 
Sbjct: 526 PPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLH 585

Query: 123 TIVEW 128
            I EW
Sbjct: 586 RIAEW 590

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E5GBB2_CUCME1.8e-3660.43Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCB5_CUCME2.3e-2349.60Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A5Y732_CUCME7.6e-1968.06Transposase OS=Cucumis melo PE=4 SV=1[more]
A0A0A0L3I2_CUCSA6.6e-0743.18Uncharacterized protein OS=Cucumis sativus GN=Csa_3G000030 PE=4 SV=1[more]
E5GBB1_CUCME1.9e-0633.33Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659093712|ref|XP_008447677.1|2.3e-3764.18PREDICTED: uncharacterized protein LOC103490086 [Cucumis melo][more]
gi|307135889|gb|ADN33754.1|2.6e-3660.43retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659068476|ref|XP_008444620.1|5.9e-2565.96PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo][more]
gi|659123900|ref|XP_008461893.1|1.9e-2348.00PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo][more]
gi|307136287|gb|ADN34114.1|3.3e-2349.60retrotransposon protein [Cucumis melo subsp. melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C015092T1MELO3C015092T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None