MELO3C015054 (gene) Melon (DHL92) v3.5.1

NameMELO3C015054
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Description30S ribosomal protein S11
Locationchr2 : 8516998 .. 8517222 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAGGCAAAAGGAGCTCCGAAGTAAAGTTGATGAGGTAGCTCTCTACGTGAAGAAGAGCAAAGAAATAGGGAGAGAAAAGACTTTTGAGGAATTCTGCGATGAGGGCTCGAAAGAAATTGAGGAGCTGGATCCTTTGGAGGATGACGCCACAAAGCCACGAAAAAAGAGAAAACTAACAATGGAGAAGAAGGATTTAAGGGAGCAGTCCAGAAAAAGGTGA

mRNA sequence

ATGAAGAGGCAAAAGGAGCTCCGAAGTAAAGTTGATGAGGTAGCTCTCTACGTGAAGAAGAGCAAAGAAATAGGGAGAGAAAAGACTTTTGAGGAATTCTGCGATGAGGGCTCGAAAGAAATTGAGGAGCTGGATCCTTTGGAGGATGACGCCACAAAGCCACGAAAAAAGAGAAAACTAACAATGGAGAAGAAGGATTTAAGGGAGCAGTCCAGAAAAAGGTGA

Coding sequence (CDS)

ATGAAGAGGCAAAAGGAGCTCCGAAGTAAAGTTGATGAGGTAGCTCTCTACGTGAAGAAGAGCAAAGAAATAGGGAGAGAAAAGACTTTTGAGGAATTCTGCGATGAGGGCTCGAAAGAAATTGAGGAGCTGGATCCTTTGGAGGATGACGCCACAAAGCCACGAAAAAAGAGAAAACTAACAATGGAGAAGAAGGATTTAAGGGAGCAGTCCAGAAAAAGGTGA

Protein sequence

MKRQKELRSKVDEVALYVKKSKEIGREKTFEEFCDEGSKEIEELDPLEDDATKPRKKRKLTMEKKDLREQSRKR*
BLAST of MELO3C015054 vs. TrEMBL
Match: A0A0A0K7W9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290550 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.8e-06
Identity = 31/74 (41.89%), Postives = 49/74 (66.22%), Query Frame = 1

Query: 1  MKRQKELRSKVDEVALYVKKSKEIGREKTFEEFCDEGSKEIEELDPLEDDATKPRKKRKL 60
          ++ QKEL +K+D+  +  KK K   R+   EE C+E  +++E+L PLED+  KP KK K+
Sbjct: 17 LREQKELLNKIDQAPISTKKGKV--RKTPSEEICEEFERKLEDLSPLEDEVVKPLKK-KV 76

Query: 61 TMEKKDLREQSRKR 75
          T++K  L++Q  KR
Sbjct: 77 TVKKSVLKKQFDKR 87

BLAST of MELO3C015054 vs. NCBI nr
Match: gi|659083323|ref|XP_008442290.1| (PREDICTED: stress response protein NST1-like [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 2.2e-10
Identity = 40/75 (53.33%), Postives = 55/75 (73.33%), Query Frame = 1

Query: 1   MKRQKELRSKVDEVALYVKKSKEIGREKTFEEFCDEGSKEIEELDPLEDDAT-KPRKKRK 60
           +++ +EL +KVD++AL V+K KE  +EKTFEEF  E  KEI+E  PLED+   +P KKR 
Sbjct: 46  LRQPEELLNKVDKLALSVEKGKE--KEKTFEEFYKEFEKEIDEFSPLEDNVVERPAKKRN 105

Query: 61  LTMEKKDLREQSRKR 75
           +TM+KK LR+Q  KR
Sbjct: 106 VTMKKKVLRDQFAKR 118

BLAST of MELO3C015054 vs. NCBI nr
Match: gi|659130998|ref|XP_008465464.1| (PREDICTED: DNA ligase 1-like [Cucumis melo])

HSP 1 Score: 69.7 bits (169), Expect = 2.5e-09
Identity = 36/73 (49.32%), Postives = 51/73 (69.86%), Query Frame = 1

Query: 1   MKRQKELRSKVDEVALYVKKSKEIGREKTFEEFCDEGSKEIEELDPLEDDATKPRKKRKL 60
           ++ ++EL +KVD+VAL V+K KE   EKTFEE C+E  KEIEEL PLED+  +   K+K 
Sbjct: 66  LREKEELLNKVDKVALSVEKRKE---EKTFEEHCEEFKKEIEELSPLEDEVVEKSSKKKR 125

Query: 61  TMEKKDLREQSRK 74
            ME +D + + +K
Sbjct: 126 IMEGQDDKRKEKK 135

BLAST of MELO3C015054 vs. NCBI nr
Match: gi|659090014|ref|XP_008445787.1| (PREDICTED: axoneme-associated protein mst101(3)-like [Cucumis melo])

HSP 1 Score: 62.4 bits (150), Expect = 3.9e-07
Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = 1

Query: 1   MKRQKELRSKVDEVALYVKKSKEIGREKTFEEFCDEGSKEIEELDPLEDDATKPRKKRKL 60
           ++ ++EL  KVD VAL  +K K    EK FE   +E  KEI++L PLE+   +P KKR  
Sbjct: 98  LREREELLGKVDNVALSAEKDK--CEEKNFEVHYEEFEKEIDKLCPLEEKVIRPAKKRTF 157

Query: 61  TMEKKDLREQSRKR 75
           TM+KK LR+Q  KR
Sbjct: 158 TMKKKALRKQFAKR 169

BLAST of MELO3C015054 vs. NCBI nr
Match: gi|700189199|gb|KGN44432.1| (hypothetical protein Csa_7G290550 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 2.5e-06
Identity = 31/74 (41.89%), Postives = 49/74 (66.22%), Query Frame = 1

Query: 1  MKRQKELRSKVDEVALYVKKSKEIGREKTFEEFCDEGSKEIEELDPLEDDATKPRKKRKL 60
          ++ QKEL +K+D+  +  KK K   R+   EE C+E  +++E+L PLED+  KP KK K+
Sbjct: 17 LREQKELLNKIDQAPISTKKGKV--RKTPSEEICEEFERKLEDLSPLEDEVVKPLKK-KV 76

Query: 61 TMEKKDLREQSRKR 75
          T++K  L++Q  KR
Sbjct: 77 TVKKSVLKKQFDKR 87

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0K7W9_CUCSA1.8e-0641.89Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290550 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659083323|ref|XP_008442290.1|2.2e-1053.33PREDICTED: stress response protein NST1-like [Cucumis melo][more]
gi|659130998|ref|XP_008465464.1|2.5e-0949.32PREDICTED: DNA ligase 1-like [Cucumis melo][more]
gi|659090014|ref|XP_008445787.1|3.9e-0747.30PREDICTED: axoneme-associated protein mst101(3)-like [Cucumis melo][more]
gi|700189199|gb|KGN44432.1|2.5e-0641.89hypothetical protein Csa_7G290550 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C015054T1MELO3C015054T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None