MELO3C015052.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C015052.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr02 : 9334018 .. 9334314 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATACCAGTAGATGTTGACGAGATTATCTGCGAGGATCTAACCACATGGATCCACCATCCATGTAGGGCAAAGCCATTTTTGCACCTAATCAAGCAATTATGTCTTAATGCTTGCCCGAAGTTAGAGAAATTCCCTCAAGTTCAAGTATGCGATAGAGTATGCACAAGACCAACACTTCATCGCATCATTTCTATCCATAAAAACAAGGCGAAGCTGAGATGCCTCAAGATCAAACAAGAAGGTCAGAAAGTGGATAAAAGTGTGGATAGCAAGAAAGAAGAAGAAGGGTAA

mRNA sequence

ATGGAAATACCAGTAGATGTTGACGAGATTATCTGCGAGGATCTAACCACATGGATCCACCATCCATGTAGGGCAAAGCCATTTTTGCACCTAATCAAGCAATTATGTCTTAATGCTTGCCCGAAGTTAGAGAAATTCCCTCAAGTTCAAGTATGCGATAGAGTATGCACAAGACCAACACTTCATCGCATCATTTCTATCCATAAAAACAAGGCGAAGCTGAGATGCCTCAAGATCAAACAAGAAGGTCAGAAAGTGGATAAAAGTGTGGATAGCAAGAAAGAAGAAGAAGGGTAA

Coding sequence (CDS)

ATGGAAATACCAGTAGATGTTGACGAGATTATCTGCGAGGATCTAACCACATGGATCCACCATCCATGTAGGGCAAAGCCATTTTTGCACCTAATCAAGCAATTATGTCTTAATGCTTGCCCGAAGTTAGAGAAATTCCCTCAAGTTCAAGTATGCGATAGAGTATGCACAAGACCAACACTTCATCGCATCATTTCTATCCATAAAAACAAGGCGAAGCTGAGATGCCTCAAGATCAAACAAGAAGGTCAGAAAGTGGATAAAAGTGTGGATAGCAAGAAAGAAGAAGAAGGGTAA

Protein sequence

MEIPVDVDEIICEDLTTWIHHPCRAKPFLHLIKQLCLNACPKLEKFPQVQVCDRVCTRPTLHRIISIHKNKAKLRCLKIKQEGQKVDKSVDSKKEEEG

Homology

[Close]

BLAST of MELO3C015052.2 vs. NCBI nr
Match: KGN57727.1 (hypothetical protein Csa_3G263250 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 2.0e-15
Identity = 48/90 (53.33%), Postives = 63/90 (70.00%), Query Frame = 0


Query: 2   EIPVDVDEIICEDLTTWIHHPCRAKPFLHLIKQLCLNACPKLEKFPQVQVCDRVCTRPTL 61
           +I V++ +II   +   + HP  A+PF +LI+QLCL AC  LEK PQV+V D +    TL
Sbjct: 60  KILVNIGKIISNHIIALVKHPRGARPFSYLIEQLCLRACLMLEKLPQVEVKDGIWLPSTL 119

Query: 62  HRIISIHKNKAKLRCLKIKQEGQKVDKSVD 92
           HRII+IHKNKAK++CLK K EG KV K +D
Sbjct: 120 HRIIAIHKNKAKIKCLKTK-EGCKVVKEID 148

[Close]

BLAST of MELO3C015052.2 vs. NCBI nr
Match: KGN58104.1 (hypothetical protein Csa_3G511970 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-05
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 2   EIPVDVDEIICEDLTTWIHHPCRAKPFLHLIKQLCLNACPKLEKFPQVQVCD 54
           EIPV+V EIIC+ +  WI HP   +PFLHLI++LCL AC   +K  Q++V D
Sbjct: 128 EIPVNVGEIICKHILAWIKHPHDGRPFLHLIEKLCLKAC-LTKKESQIKVED 178

[Close]

BLAST of MELO3C015052.2 vs. TrEMBL
Match: tr|A0A0A0LAN0|A0A0A0LAN0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G263250 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-15
Identity = 48/90 (53.33%), Postives = 63/90 (70.00%), Query Frame = 0


Query: 2   EIPVDVDEIICEDLTTWIHHPCRAKPFLHLIKQLCLNACPKLEKFPQVQVCDRVCTRPTL 61
           +I V++ +II   +   + HP  A+PF +LI+QLCL AC  LEK PQV+V D +    TL
Sbjct: 60  KILVNIGKIISNHIIALVKHPRGARPFSYLIEQLCLRACLMLEKLPQVEVKDGIWLPSTL 119

Query: 62  HRIISIHKNKAKLRCLKIKQEGQKVDKSVD 92
           HRII+IHKNKAK++CLK K EG KV K +D
Sbjct: 120 HRIIAIHKNKAKIKCLKTK-EGCKVVKEID 148

[Close]

BLAST of MELO3C015052.2 vs. TrEMBL
Match: tr|A0A0A0LAY9|A0A0A0LAY9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G511970 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.3e-06
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 2   EIPVDVDEIICEDLTTWIHHPCRAKPFLHLIKQLCLNACPKLEKFPQVQVCD 54
           EIPV+V EIIC+ +  WI HP   +PFLHLI++LCL AC   +K  Q++V D
Sbjct: 128 EIPVNVGEIICKHILAWIKHPHDGRPFLHLIEKLCLKAC-LTKKESQIKVED 178

The following BLAST results are available for this feature:

BLAST of MELO3C015052.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57727.1	2.0e-15	53.33	hypothetical protein Csa_3G263250 [Cucumis sativus]	[more]
KGN58104.1	1.1e-05	53.85	hypothetical protein Csa_3G511970 [Cucumis sativus]	[more]

BLAST of MELO3C015052.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C015052.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C015052.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LAN0\|A0A0A0LAN0_CUCSA	1.3e-15	53.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G263250 PE=4 SV=1	[more]
tr\|A0A0A0LAY9\|A0A0A0LAY9_CUCSA	7.3e-06	53.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G511970 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C015052.2.1	MELO3C015052.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C015052.2	Cucumber (Gy14) v2	cgybmedB032
MELO3C015052.2	Cucumber (Gy14) v1	cgymedB576
MELO3C015052.2	Cucurbita maxima (Rimu)	cmamedB069
MELO3C015052.2	Cucurbita maxima (Rimu)	cmamedB111
MELO3C015052.2	Cucurbita moschata (Rifu)	cmomedB061
MELO3C015052.2	Cucurbita moschata (Rifu)	cmomedB104
MELO3C015052.2	Cucurbita pepo (Zucchini)	cpemedB387
MELO3C015052.2	Wild cucumber (PI 183967)	cpimedB036
MELO3C015052.2	Cucumber (Chinese Long) v2	cumedB033
MELO3C015052.2	Bottle gourd (USVL1VR-Ls)	lsimedB418
MELO3C015052.2	Bottle gourd (USVL1VR-Ls)	lsimedB428
MELO3C015052.2	Watermelon (Charleston Gray)	medwcgB232
MELO3C015052.2	Watermelon (97103) v1	medwmB258
MELO3C015052.2	Silver-seed gourd	carmedB0546
MELO3C015052.2	Silver-seed gourd	carmedB0953
MELO3C015052.2	Cucumber (Chinese Long) v3	cucmedB039
MELO3C015052.2	Watermelon (97103) v2	medwmbB231
MELO3C015052.2	Wax gourd	medwgoB305