MELO3C015009 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C015009
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDNA-directed RNA polymerase subunit beta''
Locationchr2 : 9396364 .. 9396741 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATCGATTTGGTTAATTGTACACTTTAGACCGAGTTGTCTAGGGTACACGTTATCGGCTTGTGAAGTTTCTCCTCCTCGAGATGTCTTTCATCGTTCTACAAATTGTGGTAAATCTTCTATTCCTCATGCTTCCTCTCTTGTTACCCTATCATCTCTTCAATCTCTAGAAGATTCATATGAAACTGATGAAGATGAGTATGGTGAAGAAATCGATGATGACTATGTTTTTGTCTCTAAGGAAACACATGTTCCAGAAGAAACCACTGTTCCAGATGTTGATGCTGCTCCGTCTTGTGTCAACATAACGCTTGAGCCTCAGTCGACTAAGGTTCCTAGTGACTACCACTCCTCTATCGCTTCAAGGTCATGTTAG

mRNA sequence

ATGGGATCGATTTGGTTAATTGTACACTTTAGACCGAGTTGTCTAGGGTACACGTTATCGGCTTGTGAAGTTTCTCCTCCTCGAGATGTCTTTCATCGTTCTACAAATTGTGGTAAATCTTCTATTCCTCATGCTTCCTCTCTTGTTACCCTATCATCTCTTCAATCTCTAGAAGATTCATATGAAACTGATGAAGATGAGTATGGTGAAGAAATCGATGATGACTATGTTTTTGTCTCTAAGGAAACACATGTTCCAGAAGAAACCACTGTTCCAGATGTTGATGCTGCTCCGTCTTGTGTCAACATAACGCTTGAGCCTCAGTCGACTAAGGTTCCTAGTGACTACCACTCCTCTATCGCTTCAAGGTCATGTTAG

Coding sequence (CDS)

ATGGGATCGATTTGGTTAATTGTACACTTTAGACCGAGTTGTCTAGGGTACACGTTATCGGCTTGTGAAGTTTCTCCTCCTCGAGATGTCTTTCATCGTTCTACAAATTGTGGTAAATCTTCTATTCCTCATGCTTCCTCTCTTGTTACCCTATCATCTCTTCAATCTCTAGAAGATTCATATGAAACTGATGAAGATGAGTATGGTGAAGAAATCGATGATGACTATGTTTTTGTCTCTAAGGAAACACATGTTCCAGAAGAAACCACTGTTCCAGATGTTGATGCTGCTCCGTCTTGTGTCAACATAACGCTTGAGCCTCAGTCGACTAAGGTTCCTAGTGACTACCACTCCTCTATCGCTTCAAGGTCATGTTAG

Protein sequence

MGSIWLIVHFRPSCLGYTLSACEVSPPRDVFHRSTNCGKSSIPHASSLVTLSSLQSLEDSYETDEDEYGEEIDDDYVFVSKETHVPEETTVPDVDAAPSCVNITLEPQSTKVPSDYHSSIASRSC*
Homology
[Close]
BLAST of MELO3C015009 vs. NCBI nr
Match: gi|659109755|ref|XP_008454860.1| (PREDICTED: putative protein TPRXL [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 2.3e-07
Identity = 36/75 (48.00%), Postives = 47/75 (62.67%), Query Frame = 1 

Query: 12  PSCLGYTLSACEVSPP-RDVFHRSTNCGKSSIPHASSLVTLSSLQSLEDSYETDEDEYGE 71
           P+  G     C+VSPP RDV  R+   GKS +P ASS VT SS +S E+SY  DED+  E
Sbjct: 162 PTAQGTRSPPCDVSPPPRDVPPRTAYRGKSHVPQASSYVTPSSSKSPEESYGNDEDQLSE 221

Query: 72  EIDDDYVFVSKETHV 86
           + D+DYV  S++  V
Sbjct: 222 DTDEDYVLGSEKIPV 236

[Close]
BLAST of MELO3C015009 vs. NCBI nr
Match: gi|659128057|ref|XP_008464024.1| (PREDICTED: uncharacterized protein LOC103502008 [Cucumis melo])

HSP 1 Score: 62.8 bits (151), Expect = 5.0e-07
Identity = 41/93 (44.09%), Postives = 52/93 (55.91%), Query Frame = 1 

Query: 29  DVFHRSTNCGKSSIPHASSLVTLSSLQSLEDSYETDEDEYGEEIDDDYVFVSKETHVPEE 88
           DV  R+T+ GKSS        T S   S + S  TD+DE  ++ID+DYV V+KETH  EE
Sbjct: 60  DVPSRTTDHGKSS-------ATPSFPASPQVSLPTDDDEASDDIDEDYVPVTKETHALEE 119

Query: 89  TTVPDVDAAPSCVNITLEPQSTKVPSDYHSSIA 122
           T     D   S  N T EPQSTK P +   S++
Sbjct: 120 TMTSTEDLVSSPDNRTPEPQSTKAPGESSISMS 145

The following BLAST results are available for this feature:
BLAST of MELO3C015009 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659109755|ref|XP_008454860.1|2.3e-0748.00PREDICTED: putative protein TPRXL [Cucumis melo][more]
gi|659128057|ref|XP_008464024.1|5.0e-0744.09PREDICTED: uncharacterized protein LOC103502008 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C015009T1MELO3C015009T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C015009Bottle gourd (USVL1VR-Ls)lsimeB297
MELO3C015009Cucumber (Gy14) v2cgybmeB335
MELO3C015009Cucumber (Chinese Long) v3cucmeB400
MELO3C015009Cucumber (Gy14) v1cgymeB605
MELO3C015009Wild cucumber (PI 183967)cpimeB386
MELO3C015009Cucumber (Chinese Long) v2cumeB391
MELO3C015009Watermelon (Charleston Gray)mewcgB264