MELO3C014966 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C014966
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Description1-deoxy-D-xylulose 5-phosphate synthase
Locationchr6 : 24037019 .. 24040242 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCGCCATATCCAACATCATTCTCTCTACCTTTCCTCTTGTACTCTTTTATTTGCTTGCTTACTAAACAATATATTTCGATCAACAATAATGGCGGTTTGTTGGTCTTTCATGAAACCAAACCATTTTTGTTTTTCAACCAACCAACCTCCTTTCCCAAAATTTACTAATTATTCAACAAAGCAGGTTCTCTAATTTATTGTGGTTTTTCATTTCTTTTACCTTTTTTCCCGTGTCTTTTTTTAATTGTTGTTTTCTAAACATATGCAAAAATTTTGAATTTCCATATAAGTTAAACTTATGTATTAAATTTACTTTTATCAATCAATTGAGTGTTTTAAAACATTCTATGATTTGACCGTGTATGATTTCAAATAATCTAGGAGATGCTATATGATCAAACTACTTTTTAGTTAGTATAAGTTCTTAGATCAATCGTGATTTAACGACAACATCTCTCTTTAGTTTAAGCTTTTGGATTCATTATTGATGATTTAACATAGATTAAAGTAGAAGTTCATGTTTTGAAACCATATATAATGTCATATTTTTTAGTTGGTTTAATATGTTAATTTTCACTTGTTAGGGAGTGATTTAACATGCAACTTAGTAATTCCCATATTGGAATGCAGTTGTTAATTTGTAGGGCTTCAAGAAATGAAGTGGACCATGGAGAAAAAAGGAAGACGAGGAGTGAAGAAATTGAAAGAAAGACCAACAACAACAATGTTTTCTCAGGAGAAAAACCAATAACGCCATGGTTGGACAAAGTTTCTTACCCAATTCACATGAAGAATCTATCACTTCAGGTACTAAAATTAGGGTATTTTATTTTATTATATTTTGTTTTCTAACGCATCCACAGAATGTCTATTTATTCTCTATTTAAAAAATGTTTATAGCTTTGAAGATGTACTTTTAAATATACAGCCGCTAATAAAAACAACCTAAGGTCGCCAAATTGATATATAGTTTTGAAATATAGATGGATACAGTTGAGAGAGTTCTAAATTTAATTATTTTTAAAAAATAGAAGAATAAAGTAAATTATTGGTTGACTAAACCAATAATATCGATTGTTTGGTTTTGTAAAGTGTTTGGTGGGTGTTTCTATATGAAAAACCCAACTTGTTAATCTATCAGAGTAGCCAACAATTAGAATTTTGATAGATCGACCGATCTTCTTCATACATACATGAGGGTTTGAAAATTAAAACACAAGAAAAGGAATTGTTGGCACAATAAATTTTAAATCAACACTACATAACTTTCCTCTTTTTATTTTTCCATAAATATGCCCTCATTCTTCCAAATATATTCTTACACAAATTTCCTTTGCAACTAAATACGAACCCAAAACTTTAATGGAAATCATTCTTAACTAATCACAACAATCAGACTAATTTGAACTAGAAAAATGAATGGACAAAGTATTTTCATTGATATAAGTAATTAATAGTTTTATTATTCTCTCTTTGGTCTTACTAGTCTATATATCTACATTAAAGGATGTTAGTTTTAAAGATTGGTAATCCATATGAAGGGAATAAGACGTTATTGAATAAAAGAGAGAGAAGGGAAAAATTGGGAAAGTGTTAATTAGGTCATTCATTGAAACATTAGGAAAAATAGAAAATGAAAGAGAAAAGTGCTATATATGTATATGAGGTGCCAATGAACCATTTCTATTCATATACTAATAGTGGTAAGGACAGTTTGCTAACCTTTTTTTAGGTTAAAAGGTATCATAAGATAACTTTTAATTGGTATATTTTAACAAGATAGCAACAGTTTCTATATATCAATAAACAAATAATTGGGATGTTTTTAATTTATTTTTAGTTGAAGGGTATATATTATTATTTAAACTTTTTCAAAGATTGGGAGTATTTTCGAAATAGAGTACTAGTTGTTTCGCTAAAAAAAAAAAAAAAAGTAAAATGTGTCTTGGAATTCTTTTTTAGTTTAACTAAGGTATTACTGAAAAGTAAAACTTTTGGAATTTGGAGGCTACTTCTTAGACAAATATTGTACAAAGTTTAGGGTTTTTCATATATATATATACATACTTTAGCCAAAAATGTGATGACATTTTAAATATAAATAATTATTTATTTTCACCTTCTATGTGTCTCTTTTTTTTTTTTTTTTTATTATTATTATTATTATTTCTCCTTGCTCTCTTTATTTTCGTTTTTCCATATATCTTCTCTCTCTTTGCTCTTCAGCTTTGCTAGCATTCCTTCTTTCTGTCTTCTCTCTATCCCCTTCTTTCTTCCTCATATAAGCATCCCAAAACGGACGCGATAAACCGACCATGCTAATCAACCAACCTGAAAAATTCTCTCCACAACAGTACATGTGGTTCGAAAACTTTAAAGGAGAGGTGACAGGACTTTTCACTATTGATAAAATCGAGAGAAATAGAAAGATAAAGAAAAATAGAGACGTAGATAGTGGAGAATTTTATACAGAGGGTTTCTAATCATTCAATGGAGATACAACAATGGAAAACATATATATATATATATATATTATGGCAAACAAAAAGACACAGAGAGAAGTGAAGGTAAAAAGTGAATAAAAAGTAAAAAGTCATGTATATTTTTTCTTTTTTGGTGAGATTTCAGGATGTTGAAGAACTTGCAGCAGAAATTAGAGAAGAAGTTGTGTATTCAGTTTCGAAATCAGGTGGCCATTTAGGTTCAAACTTAGGCACTGTTGAGCTGACTGTGGCATTGCATTACGTCTTCGATGCACCTCAAGACAAGATCGTATGGGACGTCGGCCATCAGGTGCCTACAAACAATATAATATCAACTTTTAATTTAAAATCTCTCTCTTCTTTTTTTTTTTTAAGTTAATGTCATTTCTTTGTTGTTATTGACATGCATAGCTCCAAATGAAAGTGAGATAAAGTCTGAAATTTTGATGTTTACAAATAGGCTTATGCACATAAGATTCTTACGGGGAGGAGGAGTAGAATGCAAACAGTAAGGAAGGCTGGGGGACTCTCCGGATTTCCAAGAAGGGATGAAAGTATTTATGATACTTTTGGTGCTGGCCACAGCTCTACAAGCATTTCAGCTGCTCTTGGTACTTTTTTTTTTTTAATAAAGAAGGCCTATATATTAGTAGTTATTTCTTAAAACTAAATAATGAGACACAAAATTGAAATTGTTTTTGACATATTGGACAAATTAATTGAAAGTTTAATATTTTATGC

mRNA sequence

CCGCCATATCCAACATCATTCTCTCTACCTTTCCTCTTGTACTCTTTTATTTGCTTGCTTACTAAACAATATATTTCGATCAACAATAATGGCGGTTTGTTGGTCTTTCATGAAACCAAACCATTTTTGTTTTTCAACCAACCAACCTCCTTTCCCAAAATTTACTAATTATTCAACAAAGCAGTTGTTAATTTGTAGGGCTTCAAGAAATGAAGTGGACCATGGAGAAAAAAGGAAGACGAGGAGTGAAGAAATTGAAAGAAAGACCAACAACAACAATGTTTTCTCAGGAGAAAAACCAATAACGCCATGGTTGGACAAAGTTTCTTACCCAATTCACATGAAGAATCTATCACTTCAGGATGTTGAAGAACTTGCAGCAGAAATTAGAGAAGAAGTTGTGTATTCAGTTTCGAAATCAGGTGGCCATTTAGGTTCAAACTTAGGCACTGTTGAGCTGACTGTGGCATTGCATTACGTCTTCGATGCACCTCAAGACAAGATCGTATGGGACGTCGGCCATCAGGCTTATGCACATAAGATTCTTACGGGGAGGAGGAGTAGAATGCAAACAGTAAGGAAGGCTGGGGGACTCTCCGGATTTCCAAGAAGGGATGAAAGTATTTATGATACTTTTGGTGCTGGCCACAGCTCTACAAGCATTTCAGCTGCTCTTGGTACTTTTTTTTTTTTAATAAAGAAGGCCTATATATTAGTAGTTATTTCTTAAAACTAAATAATGAGACACAAAATTGAAATTGTTTTTGACATATTGGACAAATTAATTGAAAGTTTAATATTTTATGC

Coding sequence (CDS)

ATGGCGGTTTGTTGGTCTTTCATGAAACCAAACCATTTTTGTTTTTCAACCAACCAACCTCCTTTCCCAAAATTTACTAATTATTCAACAAAGCAGTTGTTAATTTGTAGGGCTTCAAGAAATGAAGTGGACCATGGAGAAAAAAGGAAGACGAGGAGTGAAGAAATTGAAAGAAAGACCAACAACAACAATGTTTTCTCAGGAGAAAAACCAATAACGCCATGGTTGGACAAAGTTTCTTACCCAATTCACATGAAGAATCTATCACTTCAGGATGTTGAAGAACTTGCAGCAGAAATTAGAGAAGAAGTTGTGTATTCAGTTTCGAAATCAGGTGGCCATTTAGGTTCAAACTTAGGCACTGTTGAGCTGACTGTGGCATTGCATTACGTCTTCGATGCACCTCAAGACAAGATCGTATGGGACGTCGGCCATCAGGCTTATGCACATAAGATTCTTACGGGGAGGAGGAGTAGAATGCAAACAGTAAGGAAGGCTGGGGGACTCTCCGGATTTCCAAGAAGGGATGAAAGTATTTATGATACTTTTGGTGCTGGCCACAGCTCTACAAGCATTTCAGCTGCTCTTGGTACTTTTTTTTTTTTAATAAAGAAGGCCTATATATTAGTAGTTATTTCTTAA

Protein sequence

MAVCWSFMKPNHFCFSTNQPPFPKFTNYSTKQLLICRASRNEVDHGEKRKTRSEEIERKTNNNNVFSGEKPITPWLDKVSYPIHMKNLSLQDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSSTSISAALGTFFFLIKKAYILVVIS*
Homology
[Close]
BLAST of MELO3C014966 vs. Swiss-Prot
Match: DXS2_ORYSJ (Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0190000 PE=2 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 2.1e-53
Identity = 101/150 (67.33%), Postives = 122/150 (81.33%), Query Frame = 1 

Query: 66  FSGEKPITPWLDKVSYPIHMKNLSLQDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELT 125
           +SGEKP TP LD V+YP+HMKNLS  ++E+LAAE+R E+V++VSK+GGHL S+LG VEL 
Sbjct: 61  YSGEKPATPLLDTVNYPVHMKNLSTPELEQLAAELRAEIVHTVSKTGGHLSSSLGVVELA 120

Query: 126 VALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGA 185
           VALH+VFD P+DKI+WDVGHQAY HKILTGRRSRM T+R+  GL+GFP+RDES +D FGA
Sbjct: 121 VALHHVFDTPEDKIIWDVGHQAYPHKILTGRRSRMHTIRQTSGLAGFPKRDESAHDAFGA 180

Query: 186 GHSSTSISAALGTFF---FLIKKAYILVVI 213
           GHSSTSISAALG       L KK +++ VI
Sbjct: 181 GHSSTSISAALGMAVARDLLGKKNHVISVI 210

[Close]
BLAST of MELO3C014966 vs. Swiss-Prot
Match: DXS1_ORYSJ (1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CLA1 PE=2 SV=2)

HSP 1 Score: 194.5 bits (493), Expect = 1.2e-48
Identity = 89/132 (67.42%), Postives = 111/132 (84.09%), Query Frame = 1 

Query: 66  FSGEKPITPWLDKVSYPIHMKNLSLQDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELT 125
           +  ++P TP LD V+YPIHMKNLSL+++++LA E+R +V++ VSK+GGHLGS+LG VELT
Sbjct: 63  YHSQRPPTPLLDTVNYPIHMKNLSLKELQQLADELRSDVIFHVSKTGGHLGSSLGVVELT 122

Query: 126 VALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGA 185
           VALHYVF+ PQDKI+WDVGHQ+Y HKILTGRR +M T+R+  GLSGF +R ES YD+FG 
Sbjct: 123 VALHYVFNTPQDKILWDVGHQSYPHKILTGRRDKMPTMRQTNGLSGFTKRSESEYDSFGT 182

Query: 186 GHSSTSISAALG 198
           GHSST+ISAALG
Sbjct: 183 GHSSTTISAALG 194

[Close]
BLAST of MELO3C014966 vs. Swiss-Prot
Match: DXS_CAPAN (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum GN=TKT2 PE=2 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 2.6e-48
Identity = 87/148 (58.78%), Postives = 117/148 (79.05%), Query Frame = 1 

Query: 50  KTRSEEIERKTNNNNVFSGEKPITPWLDKVSYPIHMKNLSLQDVEELAAEIREEVVYSVS 109
           K RS  ++   + +  +  ++P TP +D ++YPIHMKNLSL+++++LA E+R + +++VS
Sbjct: 50  KKRSRTVQASLSESGEYYTQRPPTPIVDTINYPIHMKNLSLKELKQLADELRSDTIFNVS 109

Query: 110 KSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGL 169
           K+GGHLGS+LG VELTVALHYVF+APQD+I+WDVGHQ+Y HKILTGRR +M T+R+  GL
Sbjct: 110 KTGGHLGSSLGVVELTVALHYVFNAPQDRILWDVGHQSYPHKILTGRREKMSTLRQTNGL 169

Query: 170 SGFPRRDESIYDTFGAGHSSTSISAALG 198
           +GF +R ES YD FG GHSST+ISA LG
Sbjct: 170 AGFTKRSESEYDCFGTGHSSTTISAGLG 197

[Close]
BLAST of MELO3C014966 vs. Swiss-Prot
Match: DXS_ARATH (1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=DXS PE=1 SV=2)

HSP 1 Score: 186.0 bits (471), Expect = 4.2e-46
Identity = 83/132 (62.88%), Postives = 109/132 (82.58%), Query Frame = 1 

Query: 66  FSGEKPITPWLDKVSYPIHMKNLSLQDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELT 125
           +   +P TP LD ++YPIHMKNLS++++++L+ E+R +V+++VSK+GGHLGS+LG VELT
Sbjct: 67  YYSNRPPTPLLDTINYPIHMKNLSVKELKQLSDELRSDVIFNVSKTGGHLGSSLGVVELT 126

Query: 126 VALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGA 185
           VALHY+F+ PQDKI+WDVGHQ+Y HKILTGRR +M T+R+  GLSGF +R ES +D FG 
Sbjct: 127 VALHYIFNTPQDKILWDVGHQSYPHKILTGRRGKMPTMRQTNGLSGFTKRGESEHDCFGT 186

Query: 186 GHSSTSISAALG 198
           GHSST+ISA LG
Sbjct: 187 GHSSTTISAGLG 198

[Close]
BLAST of MELO3C014966 vs. Swiss-Prot
Match: DXS_LEPCP (1-deoxy-D-xylulose-5-phosphate synthase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=dxs PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.9e-43
Identity = 84/124 (67.74%), Postives = 100/124 (80.65%), Query Frame = 1 

Query: 74  PWLDKVSYPIHMKNLSLQDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFD 133
           P L ++  P  ++ LS  ++++LA E+RE V+ SVS++GGHL SNLGTVELTVALH+VFD
Sbjct: 5   PLLPRIQSPADVRRLSRAELKQLADELREFVLQSVSRTGGHLSSNLGTVELTVALHHVFD 64

Query: 134 APQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSSTSIS 193
            P+D++VWDVGHQ Y HKILTGRR RM T+R+ GGLSGFPRRDES YDTFG  HSSTSIS
Sbjct: 65  TPEDRLVWDVGHQTYPHKILTGRRDRMSTLRQLGGLSGFPRRDESEYDTFGTAHSSTSIS 124

Query: 194 AALG 198
           AALG
Sbjct: 125 AALG 128

[Close]
BLAST of MELO3C014966 vs. TrEMBL
Match: A0A0S1LLA9_9ROSA (1-deoxy-D-xylulose-5-phosphatesynthase OS=Crataegus pinnatifida var. major GN=DXS2 PE=2 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.2e-60
Identity = 122/197 (61.93%), Postives = 148/197 (75.13%), Query Frame = 1 

Query: 1   MAVCWSFMKPNHFCFSTNQPPFPKFTNYSTKQLLICRASRNEVDHGEKRKTRSEEIERKT 60
           MAV    ++PN + FS   PP PK  N+S +Q L  +AS    D G+ R  R E+   K 
Sbjct: 1   MAVSGVLVRPNQYLFSCLNPPAPKL-NHSCRQQLCVKASAGNSDGGDCRLIRKEKDGWKI 60

Query: 61  NNNNVFSGEKPITPWLDKVSYPIHMKNLSLQDVEELAAEIREEVVYSVSKSGGHLGSNLG 120
           +    FSGEKP TP LD VSYP HMKNLS +D+E+LAAE++ ++VYSVS+SGGHL S+LG
Sbjct: 61  D----FSGEKPGTPLLDTVSYPAHMKNLSTEDLEQLAAELKVDIVYSVSQSGGHLSSSLG 120

Query: 121 TVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIY 180
            VELTVALH+VF+ P DKI+WDVGHQAY HKILTGRRS+M T+RK  GL+GFP+RDES+Y
Sbjct: 121 VVELTVALHHVFNTPDDKIIWDVGHQAYPHKILTGRRSKMHTIRKTSGLAGFPKRDESVY 180

Query: 181 DTFGAGHSSTSISAALG 198
           D FGAGHSSTSISA LG
Sbjct: 181 DAFGAGHSSTSISAGLG 192

[Close]
BLAST of MELO3C014966 vs. TrEMBL
Match: A0A075EAT7_ASTME (1-deoxy-D-xylulose 5-phosphate synthase OS=Astragalus membranaceus PE=2 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.3e-57
Identity = 118/201 (58.71%), Postives = 145/201 (72.14%), Query Frame = 1 

Query: 1   MAVCWSFMKPNHFCFSTNQPPFPKF----TNYSTKQLLICRASRNEVDHGEKRKTRSEEI 60
           MA   +F+KPNH     + PPF K     ++Y  +     RAS N    GE+   R E+ 
Sbjct: 1   MAFSTTFLKPNH-----SLPPFHKHRIPTSSYVCRNQFSVRASANSTGDGERTVLRKEKD 60

Query: 61  ERKTNNNNVFSGEKPITPWLDKVSYPIHMKNLSLQDVEELAAEIREEVVYSVSKSGGHLG 120
           E K N    +S EKP TP LD V+YP+HMKNLS QD+E+LAAE+R ++V+SVS +GGHL 
Sbjct: 61  EWKIN----YSAEKPETPLLDTVNYPVHMKNLSTQDLEQLAAELRADIVHSVSNTGGHLS 120

Query: 121 SNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRD 180
           S+LG VELTVALH+VF+ P DKI+WDVGHQAY HKILTGRRS+M ++RK  GL+GFP+RD
Sbjct: 121 SSLGVVELTVALHHVFNTPDDKIIWDVGHQAYPHKILTGRRSKMHSIRKTSGLAGFPKRD 180

Query: 181 ESIYDTFGAGHSSTSISAALG 198
           ESIYD FG GHSSTSISA LG
Sbjct: 181 ESIYDAFGVGHSSTSISAGLG 192

[Close]
BLAST of MELO3C014966 vs. TrEMBL
Match: A0A0S3R3F9_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G290300 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.4e-56
Identity = 117/198 (59.09%), Postives = 144/198 (72.73%), Query Frame = 1 

Query: 1   MAVCW-SFMKPNHFCFSTNQPPFPKFTNYSTKQLLICRASRNEVDHGEKRKTRSEEIERK 60
           MA C  +F+KPNH    T++P  P    Y T++    R S ++    EK   R E+   K
Sbjct: 1   MAFCGGTFVKPNHSFSQTHKPKAPT-PYYDTRKKFCVRVSASDSGEVEKTVIRKEKDGWK 60

Query: 61  TNNNNVFSGEKPITPWLDKVSYPIHMKNLSLQDVEELAAEIREEVVYSVSKSGGHLGSNL 120
            N    +SGEKP TP LD V++PIHMKNLS QD+E+LAAE+R ++V+SVS +GGHL S+L
Sbjct: 61  IN----YSGEKPQTPLLDTVNHPIHMKNLSTQDLEQLAAELRADIVHSVSNTGGHLSSSL 120

Query: 121 GTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESI 180
           G VEL VALH+VFD P+DKI+WDVGHQAY HKILTGRRSRM T+RK  GL+GFP+RDES 
Sbjct: 121 GVVELAVALHHVFDTPEDKIIWDVGHQAYPHKILTGRRSRMHTIRKTSGLAGFPKRDEST 180

Query: 181 YDTFGAGHSSTSISAALG 198
           +D FG GHSSTSISA LG
Sbjct: 181 HDAFGVGHSSTSISAGLG 193

[Close]
BLAST of MELO3C014966 vs. TrEMBL
Match: A0A0L9TP22_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g146500 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.4e-56
Identity = 117/198 (59.09%), Postives = 144/198 (72.73%), Query Frame = 1 

Query: 1   MAVCW-SFMKPNHFCFSTNQPPFPKFTNYSTKQLLICRASRNEVDHGEKRKTRSEEIERK 60
           MA C  +F+KPNH    T++P  P    Y T++    R S ++    EK   R E+   K
Sbjct: 1   MAFCGGTFVKPNHSFSQTHKPKAPT-PYYDTRKKFCVRVSASDSGEVEKTVIRKEKDGWK 60

Query: 61  TNNNNVFSGEKPITPWLDKVSYPIHMKNLSLQDVEELAAEIREEVVYSVSKSGGHLGSNL 120
            N    +SGEKP TP LD V++PIHMKNLS QD+E+LAAE+R ++V+SVS +GGHL S+L
Sbjct: 61  IN----YSGEKPQTPLLDTVNHPIHMKNLSTQDLEQLAAELRADIVHSVSNTGGHLSSSL 120

Query: 121 GTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESI 180
           G VEL VALH+VFD P+DKI+WDVGHQAY HKILTGRRSRM T+RK  GL+GFP+RDES 
Sbjct: 121 GVVELAVALHHVFDTPEDKIIWDVGHQAYPHKILTGRRSRMHTIRKTSGLAGFPKRDEST 180

Query: 181 YDTFGAGHSSTSISAALG 198
           +D FG GHSSTSISA LG
Sbjct: 181 HDAFGVGHSSTSISAGLG 193

[Close]
BLAST of MELO3C014966 vs. TrEMBL
Match: A0A0S3R382_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G290500 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.8e-56
Identity = 115/198 (58.08%), Postives = 143/198 (72.22%), Query Frame = 1 

Query: 1   MAVC-WSFMKPNHFCFSTNQPPFPKFTNYSTKQLLICRASRNEVDHGEKRKTRSEEIERK 60
           MA C  + +KPN +CFS    P      Y T++    R S N+    EK   R E+   K
Sbjct: 1   MAFCSGTLLKPN-YCFSPTHKPKAPTPYYDTRKKFCVRVSANDSGDVEKTIIRKEKDGWK 60

Query: 61  TNNNNVFSGEKPITPWLDKVSYPIHMKNLSLQDVEELAAEIREEVVYSVSKSGGHLGSNL 120
            N    +SGEKP TP LD +++PIHMKNLS QD+E+L+AE+R ++V+SVS +GGHL S+L
Sbjct: 61  IN----YSGEKPQTPLLDTINHPIHMKNLSTQDLEQLSAELRADIVHSVSNTGGHLSSSL 120

Query: 121 GTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESI 180
           G VEL VALH+VFD P+DKI+WDVGHQAY HKILTGRRSRM T+RK  GL+GFP+RDES+
Sbjct: 121 GVVELAVALHHVFDTPEDKIIWDVGHQAYPHKILTGRRSRMHTIRKTSGLAGFPKRDESV 180

Query: 181 YDTFGAGHSSTSISAALG 198
           +D FG GHSSTSISA LG
Sbjct: 181 HDAFGVGHSSTSISAGLG 193

[Close]
BLAST of MELO3C014966 vs. TAIR10
Match: AT4G15560.1 (AT4G15560.1 Deoxyxylulose-5-phosphate synthase)

HSP 1 Score: 186.0 bits (471), Expect = 2.4e-47
Identity = 83/132 (62.88%), Postives = 109/132 (82.58%), Query Frame = 1 

Query: 66  FSGEKPITPWLDKVSYPIHMKNLSLQDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELT 125
           +   +P TP LD ++YPIHMKNLS++++++L+ E+R +V+++VSK+GGHLGS+LG VELT
Sbjct: 67  YYSNRPPTPLLDTINYPIHMKNLSVKELKQLSDELRSDVIFNVSKTGGHLGSSLGVVELT 126

Query: 126 VALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGA 185
           VALHY+F+ PQDKI+WDVGHQ+Y HKILTGRR +M T+R+  GLSGF +R ES +D FG 
Sbjct: 127 VALHYIFNTPQDKILWDVGHQSYPHKILTGRRGKMPTMRQTNGLSGFTKRGESEHDCFGT 186

Query: 186 GHSSTSISAALG 198
           GHSST+ISA LG
Sbjct: 187 GHSSTTISAGLG 198

[Close]
BLAST of MELO3C014966 vs. TAIR10
Match: AT3G21500.2 (AT3G21500.2 1-deoxy-D-xylulose 5-phosphate synthase 1)

HSP 1 Score: 184.5 bits (467), Expect = 6.9e-47
Identity = 86/176 (48.86%), Postives = 123/176 (69.89%), Query Frame = 1 

Query: 22  FPKFTNYSTKQLLICRASRNEVDHGEKRKTRSEEIERKTNNNNVFSGEKPITPWLDKVSY 81
           FP + N +     +  +S +   + + R T   E          +   +P TP LD +++
Sbjct: 20  FPSYINRNPSLKYLKPSSMSSTKYSKVRATTFSE-------KGEYYSNRPPTPLLDTINH 79

Query: 82  PIHMKNLSLQDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVW 141
           P+HMKNLS+++++ L+ E+R +V+++VSK+GGHLGSNLG VELTVALHY+F+ P DKI+W
Sbjct: 80  PMHMKNLSIKELKVLSDELRSDVIFNVSKTGGHLGSNLGVVELTVALHYIFNTPHDKILW 139

Query: 142 DVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSSTSISAALG 198
           DVGHQ+Y HKILTGRR +M+T+R+  GLSG+ +R ES +D+FG GHSST++SA LG
Sbjct: 140 DVGHQSYPHKILTGRRGKMKTIRQTNGLSGYTKRRESEHDSFGTGHSSTTLSAGLG 188

[Close]
BLAST of MELO3C014966 vs. TAIR10
Match: AT5G11380.1 (AT5G11380.1 1-deoxy-D-xylulose 5-phosphate synthase 3)

HSP 1 Score: 112.8 bits (281), Expect = 2.5e-25
Identity = 64/138 (46.38%), Postives = 86/138 (62.32%), Query Frame = 1 

Query: 62  NNNVFSGEKPITPWLDKVSYPIHMKNLSLQDVEELAAEIREEVVYSV--SKSGGHLGSNL 121
           N + +  EK  TP LD +  P+ +KNLS+++++ LA EIR E+ +SV   K+   +  + 
Sbjct: 64  NTDGYCDEKFETPILDSIETPLQLKNLSVKELKLLADEIRTEL-HSVLWKKTQKSMNPSF 123

Query: 122 GTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESI 181
             +ELT+ALHYVF AP D I+WD   Q YAHK+LT R S + + R+  G+SG   R ES 
Sbjct: 124 AAIELTLALHYVFRAPVDNILWDAVEQTYAHKVLTRRWSAIPS-RQNSGISGVTSRLESE 183

Query: 182 YDTFGAGHSSTSISAALG 198
           YD+FG GH   SISA LG
Sbjct: 184 YDSFGTGHGCNSISAGLG 199

[Close]
BLAST of MELO3C014966 vs. NCBI nr
Match: gi|659098544|ref|XP_008450191.1| (PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Cucumis melo])

HSP 1 Score: 406.4 bits (1043), Expect = 3.2e-110
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 1 

Query: 1   MAVCWSFMKPNHFCFSTNQPPFPKFTNYSTKQLLICRASRNEVDHGEKRKTRSEEIERKT 60
           MAVCWSFMKPNHFCFSTNQPPFPKFTNYSTKQLLICRASRNEVDHGEKRKTRSEEIERKT
Sbjct: 1   MAVCWSFMKPNHFCFSTNQPPFPKFTNYSTKQLLICRASRNEVDHGEKRKTRSEEIERKT 60

Query: 61  NNNNVFSGEKPITPWLDKVSYPIHMKNLSLQDVEELAAEIREEVVYSVSKSGGHLGSNLG 120
           NNNNVFSGEKPITPWLDKVSYPIHMKNLSLQDVEELAAEIREEVVYSVSKSGGHLGSNLG
Sbjct: 61  NNNNVFSGEKPITPWLDKVSYPIHMKNLSLQDVEELAAEIREEVVYSVSKSGGHLGSNLG 120

Query: 121 TVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIY 180
           TVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIY
Sbjct: 121 TVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIY 180

Query: 181 DTFGAGHSSTSISAALG 198
           DTFGAGHSSTSISAALG
Sbjct: 181 DTFGAGHSSTSISAALG 197

[Close]
BLAST of MELO3C014966 vs. NCBI nr
Match: gi|943350820|gb|ALL29183.1| (1-deoxy-D-xylulose-5-phosphatesynthase [Crataegus pinnatifida var. major])

HSP 1 Score: 241.1 bits (614), Expect = 1.8e-60
Identity = 122/197 (61.93%), Postives = 148/197 (75.13%), Query Frame = 1 

Query: 1   MAVCWSFMKPNHFCFSTNQPPFPKFTNYSTKQLLICRASRNEVDHGEKRKTRSEEIERKT 60
           MAV    ++PN + FS   PP PK  N+S +Q L  +AS    D G+ R  R E+   K 
Sbjct: 1   MAVSGVLVRPNQYLFSCLNPPAPKL-NHSCRQQLCVKASAGNSDGGDCRLIRKEKDGWKI 60

Query: 61  NNNNVFSGEKPITPWLDKVSYPIHMKNLSLQDVEELAAEIREEVVYSVSKSGGHLGSNLG 120
           +    FSGEKP TP LD VSYP HMKNLS +D+E+LAAE++ ++VYSVS+SGGHL S+LG
Sbjct: 61  D----FSGEKPGTPLLDTVSYPAHMKNLSTEDLEQLAAELKVDIVYSVSQSGGHLSSSLG 120

Query: 121 TVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIY 180
            VELTVALH+VF+ P DKI+WDVGHQAY HKILTGRRS+M T+RK  GL+GFP+RDES+Y
Sbjct: 121 VVELTVALHHVFNTPDDKIIWDVGHQAYPHKILTGRRSKMHTIRKTSGLAGFPKRDESVY 180

Query: 181 DTFGAGHSSTSISAALG 198
           D FGAGHSSTSISA LG
Sbjct: 181 DAFGAGHSSTSISAGLG 192

[Close]
BLAST of MELO3C014966 vs. NCBI nr
Match: gi|694376940|ref|XP_009364804.1| (PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 235.0 bits (598), Expect = 1.3e-58
Identity = 120/197 (60.91%), Postives = 146/197 (74.11%), Query Frame = 1 

Query: 1   MAVCWSFMKPNHFCFSTNQPPFPKFTNYSTKQLLICRASRNEVDHGEKRKTRSEEIERKT 60
           MAV   F++PN + FS   PP PK  N+S +Q L  +AS    D  + +  R  +   K 
Sbjct: 1   MAVSGVFIRPNQYLFSCLNPPAPKL-NHSCRQQLCVKASAGNSDGEDCKLIRKGKDGWKI 60

Query: 61  NNNNVFSGEKPITPWLDKVSYPIHMKNLSLQDVEELAAEIREEVVYSVSKSGGHLGSNLG 120
           +    FSGEKP TP LD V+YP HMKNLS +D+E+LAAE+R ++VYSVS+SGGHL S+LG
Sbjct: 61  D----FSGEKPGTPLLDTVNYPAHMKNLSTEDLEQLAAELRVDIVYSVSQSGGHLSSSLG 120

Query: 121 TVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIY 180
            VELTVALH+VF+ P DKI+WDVGHQAY HKILTGRRS+M T+RK  GL+GFP+RDES Y
Sbjct: 121 VVELTVALHHVFNTPDDKIIWDVGHQAYPHKILTGRRSKMHTIRKTSGLAGFPKRDESAY 180

Query: 181 DTFGAGHSSTSISAALG 198
           D FGAGHSSTSISA LG
Sbjct: 181 DAFGAGHSSTSISAGLG 192

[Close]
BLAST of MELO3C014966 vs. NCBI nr
Match: gi|694376943|ref|XP_009364805.1| (PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic isoform X2 [Pyrus x bretschneideri])

HSP 1 Score: 235.0 bits (598), Expect = 1.3e-58
Identity = 120/197 (60.91%), Postives = 146/197 (74.11%), Query Frame = 1 

Query: 1   MAVCWSFMKPNHFCFSTNQPPFPKFTNYSTKQLLICRASRNEVDHGEKRKTRSEEIERKT 60
           MAV   F++PN + FS   PP PK  N+S +Q L  +AS    D  + +  R  +   K 
Sbjct: 1   MAVSGVFIRPNQYLFSCLNPPAPKL-NHSCRQQLCVKASAGNSDGEDCKLIRKGKDGWKI 60

Query: 61  NNNNVFSGEKPITPWLDKVSYPIHMKNLSLQDVEELAAEIREEVVYSVSKSGGHLGSNLG 120
           +    FSGEKP TP LD V+YP HMKNLS +D+E+LAAE+R ++VYSVS+SGGHL S+LG
Sbjct: 61  D----FSGEKPGTPLLDTVNYPAHMKNLSTEDLEQLAAELRVDIVYSVSQSGGHLSSSLG 120

Query: 121 TVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIY 180
            VELTVALH+VF+ P DKI+WDVGHQAY HKILTGRRS+M T+RK  GL+GFP+RDES Y
Sbjct: 121 VVELTVALHHVFNTPDDKIIWDVGHQAYPHKILTGRRSKMHTIRKTSGLAGFPKRDESAY 180

Query: 181 DTFGAGHSSTSISAALG 198
           D FGAGHSSTSISA LG
Sbjct: 181 DAFGAGHSSTSISAGLG 192

[Close]
BLAST of MELO3C014966 vs. NCBI nr
Match: gi|658006609|ref|XP_008338473.1| (PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic isoform X1 [Malus domestica])

HSP 1 Score: 232.3 bits (591), Expect = 8.1e-58
Identity = 118/197 (59.90%), Postives = 146/197 (74.11%), Query Frame = 1 

Query: 1   MAVCWSFMKPNHFCFSTNQPPFPKFTNYSTKQLLICRASRNEVDHGEKRKTRSEEIERKT 60
           MAV    ++PN +  S   PP PK  N+S +Q L  +AS    D  + +  R E+   K 
Sbjct: 1   MAVSGVXIRPNQYLXSCLNPPAPKL-NHSCRQQLCVKASAGNSDGEDCKLIRKEKDGWKI 60

Query: 61  NNNNVFSGEKPITPWLDKVSYPIHMKNLSLQDVEELAAEIREEVVYSVSKSGGHLGSNLG 120
           +    FSGEKP TP LD V+YP HMKNLS +D+E+LAAE+R ++VYSVS+SGGHL S+LG
Sbjct: 61  D----FSGEKPGTPLLDTVNYPAHMKNLSTEDLEQLAAELRVDIVYSVSQSGGHLSSSLG 120

Query: 121 TVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIY 180
            VELTVALH+VF+ P DKI+WDVGHQAY HKILTGRRS++ T+RK  GL+GFP+RDES+Y
Sbjct: 121 VVELTVALHHVFNTPDDKIIWDVGHQAYPHKILTGRRSKIHTIRKTSGLAGFPKRDESVY 180

Query: 181 DTFGAGHSSTSISAALG 198
           D FGAGHSSTSISA LG
Sbjct: 181 DAFGAGHSSTSISAGLG 192

The following BLAST results are available for this feature:
BLAST of MELO3C014966 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DXS2_ORYSJ2.1e-5367.33Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic OS=Oryza sativ... [more]
DXS1_ORYSJ1.2e-4867.421-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic OS=Oryza sativa subsp. ... [more]
DXS_CAPAN2.6e-4858.78Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annu... [more]
DXS_ARATH4.2e-4662.881-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana G... [more]
DXS_LEPCP1.9e-4367.741-deoxy-D-xylulose-5-phosphate synthase OS=Leptothrix cholodnii (strain ATCC 511... [more]
BLAST of MELO3C014966 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0S1LLA9_9ROSA1.2e-6061.931-deoxy-D-xylulose-5-phosphatesynthase OS=Crataegus pinnatifida var. major GN=DX... [more]
A0A075EAT7_ASTME1.3e-5758.711-deoxy-D-xylulose 5-phosphate synthase OS=Astragalus membranaceus PE=2 SV=1[more]
A0A0S3R3F9_PHAAN1.4e-5659.09Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G290300 PE=... [more]
A0A0L9TP22_PHAAN1.4e-5659.09Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g146500 PE=3 SV=1[more]
A0A0S3R382_PHAAN1.8e-5658.08Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G290500 PE=... [more]
BLAST of MELO3C014966 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G15560.12.4e-4762.88 Deoxyxylulose-5-phosphate synthase[more]
AT3G21500.26.9e-4748.86 1-deoxy-D-xylulose 5-phosphate synthase 1[more]
AT5G11380.12.5e-2546.38 1-deoxy-D-xylulose 5-phosphate synthase 3[more]
BLAST of MELO3C014966 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659098544|ref|XP_008450191.1|3.2e-110100.00PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Cu... [more]
gi|943350820|gb|ALL29183.1|1.8e-6061.931-deoxy-D-xylulose-5-phosphatesynthase [Crataegus pinnatifida var. major][more]
gi|694376940|ref|XP_009364804.1|1.3e-5860.91PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic iso... [more]
gi|694376943|ref|XP_009364805.1|1.3e-5860.91PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic iso... [more]
gi|658006609|ref|XP_008338473.1|8.1e-5859.90PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic iso... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005477Dxylulose-5-P_synthase
Vocabulary: Molecular Function
TermDefinition
GO:00086611-deoxy-D-xylulose-5-phosphate synthase activity
Vocabulary: Biological Process
TermDefinition
GO:0016114terpenoid biosynthetic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006694 steroid biosynthetic process
biological_process GO:0016114 terpenoid biosynthetic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU64647melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C014966T1MELO3C014966T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU64647MU64647transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005477Deoxyxylulose-5-phosphate synthasePFAMPF13292DXP_synthase_Ncoord: 76..198
score: 1.1
NoneNo IPR availablePANTHERPTHR11624:SF83SUBFAMILY NOT NAMEDcoord: 89..197
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C014966Cucumber (Gy14) v2cgybmeB211
MELO3C014966Silver-seed gourdcarmeB0923
MELO3C014966Silver-seed gourdcarmeB0991
MELO3C014966Watermelon (97103) v2mewmbB431
MELO3C014966Cucumber (Chinese Long) v3cucmeB248
MELO3C014966Wax gourdmewgoB500
MELO3C014966Cucumber (Gy14) v1cgymeB437
MELO3C014966Cucurbita maxima (Rimu)cmameB292
MELO3C014966Cucurbita maxima (Rimu)cmameB689
MELO3C014966Cucurbita moschata (Rifu)cmomeB285
MELO3C014966Cucurbita moschata (Rifu)cmomeB680
MELO3C014966Wild cucumber (PI 183967)cpimeB242
MELO3C014966Cucumber (Chinese Long) v2cumeB244
MELO3C014966Watermelon (Charleston Gray)mewcgB416
MELO3C014966Watermelon (97103) v1mewmB451
MELO3C014966Cucurbita pepo (Zucchini)cpemeB186
MELO3C014966Cucurbita pepo (Zucchini)cpemeB409
MELO3C014966Bottle gourd (USVL1VR-Ls)lsimeB380